RLG00000033582

Mpv17 / PMP22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012834
Physical Location & Seq
Reverse (-)
29231757 .. 29234742
2986 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033582

Sequence Viewer

Length: 888 bp
ATGGTGGTGAGCAGGGCAGAGTGTGAAGGTGTGGAGAGCGAGTTGGTGAGTCAGGTCGGTGGGTTTGGAGCGAGTGAGGGGAGGCTTTCGTTTGAAGGGGCTGGTGGGTTTGGGTCTTCTGGGGTTGGAAATGAGAGAGGGAATGAGGAATTTTACAGGCTTGTGGATAGGAGTATTAATGCCACCATTGTGCTTGCAGCTGGTACTTTTGCTATTACCAAGTTGCTCACTATTGATCAGGATTATTGGCATGGATGGACTATATATGAGATTGTAAGATATGCACCTCAACACAACTGGACTGCTTATGAGGAAGCTCTCAAGGCTAATCCAGTGTTAGCCAAAATGGTAATTAGTGGTGTTGTATACTCTGTCGGGGACTGGATTGCACAGTGCTTTGAAGGAAAACCTTTATTTGAGTTCGACCGGGCACGGATGTTCAGATCTGGACTTGTTGGTTTTACTCTCCATGGTTCTCTATCGCACTACTATTACCAGTTTTGTGAGGAGCTTTTTCCTTTCCAAGGGTGGTGGGTGGTTCCTGTCAAAGTAGTCTTCGACCAAACTATTTGGGCAGCAATTTGGAACAGCATTTACTTTACAGTTTTGGGATTTTTACGTCTTGAATCTCCTATCAATATTTATAGTGAACTGAAATCGACATTCTGGCCCATGCTGACTGCAGGGTGGAAGCTTTGGCCATTTGCTCATCTTATTACGTATGGTGTGATCCCCGTTGAACAAAGGCTCTTATGGGTGGACTGTGTAGAGTTAATTTGGGTGACCATACTCTCAACTTATTCCAATGAAAAGTCTGAAGCAAGGATTTCTGACACATCAGCTGAAGCAAGTTCCAGCTCTCCTAACATAAGTCCTCTTGAGGAGTAA

Protein Analysis

296

Amino Acids

33.29

Weight (kDa)

4.87

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 205 - 265 5.2e-18 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012834)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52870 AT1G52870
fragaria_vesca FvH4_3g20720
malus_domestica MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica Prupe.4G187300_v2.0.a1
pyrus_communis pycom03g17100 pycom11g21150
rosa_chinensis RchiOBHm_Chr5g0034871
rosa_laevigata RLG00000033582
rosa_multiflora Rmu_sc0002460.1_g000037
rosa_roxburghii Rroxscaffold_1G00045460
rosa_rugosa Rorug05G0148900
rosa_samantha Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana Rw5G022050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 366
AclWI GGATC 1 cut(s) 724
AcoI YGGCCR 1 cut(s) 698
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 2 cut(s) 837, 864
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 524
AgsI TTSAA 4 cut(s) 95, 401, 626, 740
AleI CACNNNNGTG 1 cut(s) 188
AluBI AGCT 6 cut(s) 200, 317, 511, 694, 842, 858
AluI AGCT 6 cut(s) 200, 317, 511, 694, 842, 858
AlwI GGATC 1 cut(s) 724
AoxI GGCC 2 cut(s) 668, 698
ApeKI GCWGC 2 cut(s) 197, 575
ApoI RAATTY 1 cut(s) 149
AseI ATTAAT 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 669
AsuC2I CCSGG 1 cut(s) 428
AsuHPI GGTGA 3 cut(s) 19, 58, 793
BaeGI GKGCMC 1 cut(s) 433
BalI TGGCCA 1 cut(s) 700
BbsI GAAGAC 2 cut(s) 108, 547
BbvI GCAGC 2 cut(s) 209, 587
BccI CCATC 1 cut(s) 249
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 1 cut(s) 428
BfmI CTRYAG 1 cut(s) 681
BglII AGATCT 1 cut(s) 443
BisI GCNGC 2 cut(s) 198, 576
BlsI GCNGC 2 cut(s) 199, 577
Bme1390I CCNGG 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 669
BmiI GGNNCC 1 cut(s) 540
BmrFI CCNGG 1 cut(s) 428
BpiI GAAGAC 2 cut(s) 108, 547
BpuEI CTTGAG 1 cut(s) 305
BpuMI CCSGG 1 cut(s) 428
BsaAI YACGTR 1 cut(s) 720
BsaJI CCNNGG 2 cut(s) 469, 523
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 524
Bse1I ACTGG 4 cut(s) 302, 332, 386, 496
BseDI CCNNGG 2 cut(s) 469, 523
BseGI GGATG 2 cut(s) 260, 441
BseLI CCNNNNNNNGG 1 cut(s) 524
BseNI ACTGG 4 cut(s) 302, 332, 386, 496
BseRI GAGGAG 1 cut(s) 521
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 2 cut(s) 209, 587
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 2 cut(s) 670, 700
BsiEI CGRYCG 1 cut(s) 427
BsiSI CCGG 1 cut(s) 427
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 2 cut(s) 670, 700
Bsp1286I GDGCHC 1 cut(s) 433
Bsp143I GATC 3 cut(s) 235, 443, 729
Bsp19I CCATGG 1 cut(s) 469
BspANI GGCC 2 cut(s) 670, 700
BspLI GGNNCC 1 cut(s) 540
BspMAI CTGCAG 1 cut(s) 685
BspPI GGATC 1 cut(s) 724
BsrI ACTGG 4 cut(s) 302, 332, 386, 496
BssECI CCNNGG 2 cut(s) 469, 523
BssMI GATC 3 cut(s) 235, 443, 729
BssNAI GTATAC 1 cut(s) 367
BssT1I CCWWGG 2 cut(s) 469, 523
Bst1107I GTATAC 1 cut(s) 367
Bst4CI ACNGT 3 cut(s) 393, 604, 764
BstBAI YACGTR 1 cut(s) 720
BstC8I GCNNGC 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 469
BstEII GGTNACC 1 cut(s) 781
BstENI CCTNNNNNAGG 1 cut(s) 522
BstF5I GGATG 2 cut(s) 260, 441
BstKTI GATC 3 cut(s) 238, 446, 732
BstMBI GATC 3 cut(s) 235, 443, 729
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstPI GGTNACC 1 cut(s) 781
BstSCI CCNGG 1 cut(s) 426
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 1 cut(s) 433
BstSNI TACGTA 1 cut(s) 720
BstV1I GCAGC 2 cut(s) 209, 587
BstV2I GAAGAC 2 cut(s) 108, 547
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BstZ17I GTATAC 1 cut(s) 367
BsuRI GGCC 2 cut(s) 670, 700
BtgI CCRYGG 1 cut(s) 469
BtsCI GGATG 2 cut(s) 260, 441
BtsIMutI CAGTG 2 cut(s) 339, 398
Cac8I GCNNGC 1 cut(s) 195
Cfr13I GGNCC 1 cut(s) 669
Csp6I GTAC 1 cut(s) 204
CspCI CAANNNNNGTGG 2 cut(s) 512, 547
CviAII CATG 3 cut(s) 251, 470, 673
CviQI GTAC 1 cut(s) 204
DpnI GATC 3 cut(s) 237, 445, 731
DpnII GATC 3 cut(s) 235, 443, 729
EaeI YGGCCR 1 cut(s) 698
Eco105I TACGTA 1 cut(s) 720
Eco130I CCWWGG 2 cut(s) 469, 523
Eco57I CTGAAG 2 cut(s) 837, 864
Eco91I GGTNACC 1 cut(s) 781
EcoNI CCTNNNNNAGG 1 cut(s) 522
EcoO65I GGTNACC 1 cut(s) 781
EcoT14I CCWWGG 2 cut(s) 469, 523
ErhI CCWWGG 2 cut(s) 469, 523
FaeI CATG 3 cut(s) 254, 473, 676
FaqI GGGAC 1 cut(s) 392
FatI CATG 3 cut(s) 250, 469, 672
FbaI TGATCA 1 cut(s) 235
FblI GTMKAC 1 cut(s) 366
Fnu4HI GCNGC 2 cut(s) 198, 576
FokI GGATG 2 cut(s) 267, 448
Fsp4HI GCNGC 2 cut(s) 198, 576
GluI GCNGC 2 cut(s) 198, 576
HaeIII GGCC 2 cut(s) 670, 700
HapII CCGG 1 cut(s) 427
Hin1II CATG 3 cut(s) 254, 473, 676
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 2 cut(s) 49, 626
HpaII CCGG 1 cut(s) 427
HphI GGTGA 3 cut(s) 19, 58, 793
Hpy166II GTNNAC 3 cut(s) 367, 650, 760
Hpy188I TCNGA 3 cut(s) 443, 817, 832
Hpy188III TCNNGA 4 cut(s) 239, 447, 623, 878
Hpy8I GTNNAC 3 cut(s) 367, 650, 760
HpyAV CCTTC 3 cut(s) 20, 89, 395
HpyCH4III ACNGT 3 cut(s) 393, 604, 764
HpyCH4IV ACGT 2 cut(s) 619, 719
HpyCH4V TGCA 4 cut(s) 197, 284, 389, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpySE526I ACGT 2 cut(s) 619, 719
Hsp92II CATG 3 cut(s) 254, 473, 676
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 3 cut(s) 235, 443, 729
LmnI GCTCC 2 cut(s) 68, 508
Lsp1109I GCAGC 2 cut(s) 209, 587
MaeII ACGT 2 cut(s) 619, 719
MaeIII GTNAC 1 cut(s) 781
MalI GATC 3 cut(s) 237, 445, 731
MboI GATC 3 cut(s) 235, 443, 729
MboII GAAGA 2 cut(s) 108, 547
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 433
MlsI TGGCCA 1 cut(s) 700
MluCI AATT 4 cut(s) 149, 351, 579, 774
MluNI TGGCCA 1 cut(s) 700
MlyI GAGTC 1 cut(s) 58
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 9 cut(s) 70, 75, 131, 139, 297, 304, 499, 874, 885
Mox20I TGGCCA 1 cut(s) 700
MscI TGGCCA 1 cut(s) 700
MseI TTAA 2 cut(s) 177, 773
MslI CAYNNNNRTG 1 cut(s) 188
Msp20I TGGCCA 1 cut(s) 700
MspA1I CMGCKG 2 cut(s) 200, 842
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 323
NciI CCSGG 1 cut(s) 428
NcoI CCATGG 1 cut(s) 469
NdeII GATC 3 cut(s) 235, 443, 729
NlaIII CATG 3 cut(s) 254, 473, 676
NlaIV GGNNCC 1 cut(s) 540
NmuCI GTSAC 1 cut(s) 781
OliI CACNNNNGTG 1 cut(s) 188
PfeI GAWTC 1 cut(s) 626
PkrI GCNGC 2 cut(s) 199, 577
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
Ppu21I YACGTR 1 cut(s) 720
PshBI ATTAAT 1 cut(s) 177
PspEI GGTNACC 1 cut(s) 781
PspN4I GGNNCC 1 cut(s) 540
PspPI GGNCC 1 cut(s) 669
PsrI GAACNNNNNNTAC 2 cut(s) 578, 610
PstI CTGCAG 1 cut(s) 685
PsuI RGATCY 1 cut(s) 443
PvuII CAGCTG 2 cut(s) 200, 842
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
RseI CAYNNNNRTG 1 cut(s) 188
SaqAI TTAA 2 cut(s) 177, 773
SatI GCNGC 2 cut(s) 198, 576
Sau3AI GATC 3 cut(s) 235, 443, 729
Sau96I GGNCC 1 cut(s) 669
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 1 cut(s) 433
SfcI CTRYAG 1 cut(s) 681
SmiMI CAYNNNNRTG 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 320, 878
SmoI CTYRAG 2 cut(s) 320, 878
SnaBI TACGTA 1 cut(s) 720
Sse9I AATT 4 cut(s) 149, 351, 579, 774
SspI AATATT 1 cut(s) 640
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 2 cut(s) 469, 523
TaaI ACNGT 3 cut(s) 393, 604, 764
TaiI ACGT 2 cut(s) 622, 722
TaqI TCGA 3 cut(s) 423, 558, 659
TasI AATT 4 cut(s) 149, 351, 579, 774
TfiI GAWTC 1 cut(s) 626
Tru1I TTAA 2 cut(s) 177, 773
Tru9I TTAA 2 cut(s) 177, 773
TscAI CASTG 2 cut(s) 339, 398
TseFI GTSAC 1 cut(s) 781
TseI GCWGC 2 cut(s) 197, 575
Tsp45I GTSAC 1 cut(s) 781
TspDTI ATGAA 1 cut(s) 822
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 2 cut(s) 339, 398
VspI ATTAAT 1 cut(s) 177
XagI CCTNNNNNAGG 1 cut(s) 522
XapI RAATTY 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.