MD11G1239700.v1.1

Mpv17 / PMP22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012834
Physical Location & Seq
Forward (+)
34840889 .. 34845652
4764 bp
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UTR
Exon/CDS
Intron
MD11G1239700.v1.1.491

Sequence Viewer

Length: 585 bp
ATGCTTGCAGCTGGTACTTTTGCTCTCACTAAGTTGATCACCGTCGATCAGGATTACTGGCATGGTTGGACTCTATATGAGATCCTATGGTATGCACCTCAACACAACTGGTCTGCTTATGAGGAAGCTCTCAAGACTAACCCAGTTTTAGCCAAAATGGTGATTAGTGGTGTCGTGTACTCTGTAGGGGACTGGATTGCCCAGGAGCTTATTCCTTTCCAAGACTGGTGGGTGGTTCCTGTCAAAGTAGCCTTCGACCAAACTGTATGGGCAGCGATTTGGAACAGCATTTACTTTACAGTTTTGGGATTTTTGCGTTTTGAATCTCTCATAAGTATTTTTAGTGAACTTAAGGCAACATTTTTGCCGATGCTGACAGCAGGGTGGAAGCTTTGGCCATTTGCACATCTTGTTACCTATGGTGTGATCCCTGTCGAACAAAGGCTCTTATGGGTGGACTGTGTAGAGTTAATCTGGGTGACTATACTCTCGACTTACTCAAATGAAAAATCAGAAGCAAGAATTTCCGAGGCACCAGCTGAAGCAAATTCCAGTTCTTCAGACACAGGTCCTCTTGAGAAGTAA

Protein Analysis

195

Amino Acids

22.16

Weight (kDa)

4.69

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 104 - 164 1.8e-17 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012834)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52870 AT1G52870
fragaria_vesca FvH4_3g20720
malus_domestica MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica Prupe.4G187300_v2.0.a1
pyrus_communis pycom03g17100 pycom11g21150
rosa_chinensis RchiOBHm_Chr5g0034871
rosa_laevigata RLG00000033582
rosa_multiflora Rmu_sc0002460.1_g000037
rosa_roxburghii Rroxscaffold_1G00045460
rosa_rugosa Rorug05G0148900
rosa_samantha Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana Rw5G022050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 532
AclWI GGATC 2 cut(s) 76, 421
AcoI YGGCCR 1 cut(s) 395
AcsI RAATTY 2 cut(s) 522, 547
AcuI CTGAAG 2 cut(s) 543, 561
AfaI GTAC 2 cut(s) 16, 179
AflII CTTAAG 1 cut(s) 350
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 5 cut(s) 11, 128, 208, 391, 539
AluI AGCT 5 cut(s) 11, 128, 208, 391, 539
AlwI GGATC 2 cut(s) 76, 421
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 8, 272
ApoI RAATTY 2 cut(s) 522, 547
AspS9I GGNCC 1 cut(s) 569
AsuHPI GGTGA 3 cut(s) 31, 172, 490
AvaII GGWCC 1 cut(s) 569
BalI TGGCCA 1 cut(s) 397
BanI GGYRCC 1 cut(s) 532
BbvI GCAGC 2 cut(s) 20, 284
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 350
BisI GCNGC 2 cut(s) 9, 273
BlsI GCNGC 2 cut(s) 10, 274
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 569
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 2 cut(s) 237, 534
BmrFI CCNGG 1 cut(s) 203
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 360
BmuI ACTGGG 1 cut(s) 137
BoxI GACNNNNGTC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 201, 528
Bse1I ACTGG 6 cut(s) 62, 113, 143, 197, 230, 552
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 201, 528
BseNI ACTGG 6 cut(s) 62, 113, 143, 197, 230, 552
BseXI GCAGC 2 cut(s) 20, 284
BshFI GGCC 1 cut(s) 397
BshNI GGYRCC 1 cut(s) 532
BslFI GGGAC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 397
Bsp143I GATC 4 cut(s) 36, 46, 81, 426
BspANI GGCC 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 237, 534
BspPI GGATC 2 cut(s) 76, 421
BspT107I GGYRCC 1 cut(s) 532
BspTI CTTAAG 1 cut(s) 350
BsrI ACTGG 6 cut(s) 62, 113, 143, 197, 230, 552
BssECI CCNNGG 2 cut(s) 201, 528
BssMI GATC 4 cut(s) 36, 46, 81, 426
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 4 cut(s) 43, 265, 301, 461
BstAFI CTTAAG 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 30
BstKTI GATC 4 cut(s) 39, 49, 84, 429
BstMBI GATC 4 cut(s) 36, 46, 81, 426
BstNI CCWGG 1 cut(s) 203
BstPAI GACNNNNGTC 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 20, 284
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 1 cut(s) 397
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 569
Csp6I GTAC 2 cut(s) 15, 178
CspCI CAANNNNNGTGG 2 cut(s) 209, 244
CviAII CATG 1 cut(s) 62
CviJI RGCY 9 cut(s) 11, 128, 152, 208, 251, 391, 397, 445, 539
CviKI_1 RGCY 9 cut(s) 11, 128, 152, 208, 251, 391, 397, 445, 539
CviQI GTAC 2 cut(s) 15, 178
DdeI CTNAG 1 cut(s) 30
DpnI GATC 4 cut(s) 38, 48, 83, 428
DpnII GATC 4 cut(s) 36, 46, 81, 426
EaeI YGGCCR 1 cut(s) 395
Eco47I GGWCC 1 cut(s) 569
Eco57I CTGAAG 2 cut(s) 543, 561
EcoO109I RGGNCCY 1 cut(s) 569
EcoRII CCWGG 1 cut(s) 201
FaeI CATG 1 cut(s) 65
FaqI GGGAC 1 cut(s) 203
FatI CATG 1 cut(s) 61
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 2 cut(s) 9, 273
Fsp4HI GCNGC 2 cut(s) 9, 273
GluI GCNGC 2 cut(s) 9, 273
HaeIII GGCC 1 cut(s) 397
Hin1II CATG 1 cut(s) 65
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 2 cut(s) 70, 323
HphI GGTGA 3 cut(s) 31, 172, 490
Hpy166II GTNNAC 3 cut(s) 178, 347, 457
Hpy188I TCNGA 3 cut(s) 514, 529, 562
Hpy188III TCNNGA 4 cut(s) 50, 133, 490, 575
Hpy8I GTNNAC 3 cut(s) 178, 347, 457
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 4 cut(s) 43, 265, 301, 461
HpyCH4V TGCA 3 cut(s) 8, 95, 404
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 1 cut(s) 65
Ksp22I TGATCA 1 cut(s) 36
Kzo9I GATC 4 cut(s) 36, 46, 81, 426
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 2 cut(s) 20, 284
LweI GCATC 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 412, 478
MalI GATC 4 cut(s) 38, 48, 83, 428
MboI GATC 4 cut(s) 36, 46, 81, 426
MboII GAAGA 1 cut(s) 549
MflI RGATCY 1 cut(s) 81
MlsI TGGCCA 1 cut(s) 397
MluCI AATT 2 cut(s) 522, 547
MluNI TGGCCA 1 cut(s) 397
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 4 cut(s) 108, 115, 523, 582
Mox20I TGGCCA 1 cut(s) 397
MscI TGGCCA 1 cut(s) 397
MseI TTAA 2 cut(s) 351, 470
Msp20I TGGCCA 1 cut(s) 397
MspA1I CMGCKG 2 cut(s) 11, 539
MspCI CTTAAG 1 cut(s) 350
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
NdeII GATC 4 cut(s) 36, 46, 81, 426
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 2 cut(s) 237, 534
NmuCI GTSAC 1 cut(s) 478
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 2 cut(s) 10, 274
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 569
PshAI GACNNNNGTC 1 cut(s) 567
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 237, 534
PspPI GGNCC 1 cut(s) 569
PspPPI RGGWCCY 1 cut(s) 569
PsrI GAACNNNNNNTAC 2 cut(s) 275, 307
PsuI RGATCY 1 cut(s) 81
PvuII CAGCTG 2 cut(s) 11, 539
RsaI GTAC 2 cut(s) 16, 179
RsaNI GTAC 2 cut(s) 15, 178
SaqAI TTAA 2 cut(s) 351, 470
SatI GCNGC 2 cut(s) 9, 273
Sau3AI GATC 4 cut(s) 36, 46, 81, 426
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 203
SetI ASST 8 cut(s) 13, 100, 130, 210, 393, 419, 541, 571
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 569
SmlI CTYRAG 3 cut(s) 131, 350, 575
SmoI CTYRAG 3 cut(s) 131, 350, 575
Sse9I AATT 2 cut(s) 522, 547
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 4 cut(s) 43, 265, 301, 461
TaqI TCGA 4 cut(s) 45, 255, 435, 491
TasI AATT 2 cut(s) 522, 547
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 351, 470
Tru9I TTAA 2 cut(s) 351, 470
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 2 cut(s) 8, 272
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 1 cut(s) 519
Vha464I CTTAAG 1 cut(s) 350
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 2 cut(s) 522, 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.