Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0012834

Physical Location & Seq

Genomic Coordinates Forward (+)

30669574 .. 30673758

Gene Structure 4185 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1222400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCCGCCATCCACTCCATAGCAGCTCAGAGCTTCCTCTCTCTCCCGAACCCCAAACCCAGAAAACCCATTGCCGCTCACCCAAAACCCATCTTGACCTCCAAACTCCCAAAAAACCCAACTTTCCCCAGAAACAAACAGAAAAGCAGGTGGGTTTTGAACTCGGCGGTCGAGCGAGAAGAGTGCGATGTGATTCCGGTTCATAGCTCCGACCGTACGGACCAGCAGGAAGGGGTGGTGGCCAGCAGGGTGGAGAGCGAAGGCGGGGATCAGGGGGAGTTGGTGAGTCAGGTGGGCGGGTTCGGAGCGAGTGAGGGGCGGCTTTCGTTTGAAGGGGCTGGTGGGTTTGGGTCTTCTGGGGTTGGAAGTGAGAGGGAGAGTGAGGAATTCGAGAGGCTGGTGGATAGGACTATCAATGCCGCTATTGTGCTTGCAGCTGGTACTTTTGCTCTCACTAAGTTGGTCACCGTCGACCAGGATTACTGGCATGGTTGGACTCTATATGAGATCCTCAGATACGCACCTCAACACAACTGGAGCGCTTATGAGGACGCTCTCAAGACTAACCCAGTTTTAGCCAAAATGGTGATTAGTGGTGTGGTGTACTCTGTAGGGGACTGGATTGCACAGTGCTTTGAAGGAAAACCTCTATTTGAGTTCGACCGTTCACGAATGCTCAGGTCAGGTCTTGTTGGATTTACTCTCCATGGTTCCCTCTCTCACTACTATTACCAGTTTTGCGAGGAGCTTTTTCCCTTCCAAGACTGGTGGGTGGTTCCTGCCAAAGTAGCCTTCGACCAAACCGTATGGGCAGCAATTTGGAACAGCATTTACTTTACAGTAGTGGGATTTTTGCGTTTTGAATCTCCCATCAGTATTTTTAGTGAACTGACAGCGACATTTTGGCCAATGCTAACAGCAGGGTGGAAGCTTTGGCCATTTGCGCATCTTGTTACCTATGGTGTGATCCCTGTCGAACAAAGGCTCTTATGGGTGGACTGTGTAGAGTTAGTCTGGGTGACTATACTCTCAACTTACTCAAATGAAAAATCAGAAGCAAGGATTTCTGAGGCACCAGCTGAAGATATTTCCAGTTCGTCGAACACAAGTCCTCTTGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

375

Amino Acids

41.84

Weight (kDa)

5.17

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mpv17_PMP22	PF04117	284 - 344	1.9e-16	Mpv17 / PMP22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52870 AT1G52870
fragaria_vesca	FvH4_3g20720
malus_domestica	MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica	Prupe.4G187300_v2.0.a1
pyrus_communis	pycom03g17100 pycom11g21150
rosa_chinensis	RchiOBHm_Chr5g0034871
rosa_laevigata	RLG00000033582
rosa_multiflora	Rmu_sc0002460.1_g000037
rosa_roxburghii	Rroxscaffold_1G00045460
rosa_rugosa	Rorug05G0148900
rosa_samantha	Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana	Rw5G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	138
Acc16I	TGCGCA	1 cut(s)	945
Acc36I	ACCTGC	1 cut(s)	138
AccB1I	GGYRCC	1 cut(s)	1072
AccBSI	CCGCTC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	471
AciI	CCGC	7 cut(s)	6, 75, 167, 264, 297, 319, 420
AclWI	GGATC	3 cut(s)	276, 502, 961
AcoI	YGGCCR	4 cut(s)	3, 240, 905, 935
AcsI	RAATTY	1 cut(s)	386
AcuI	CTGAAG	1 cut(s)	1101
AfaI	GTAC	3 cut(s)	217, 442, 605
AfeI	AGCGCT	1 cut(s)	541
AgsI	TTSAA	4 cut(s)	160, 332, 638, 863
AjnI	CCWGG	1 cut(s)	474
AjuI	GAANNNNNNNTTGG	2 cut(s)	776, 808
AluBI	AGCT	7 cut(s)	26, 33, 207, 437, 748, 931, 1079
AluI	AGCT	7 cut(s)	26, 33, 207, 437, 748, 931, 1079
AlwI	GGATC	3 cut(s)	276, 502, 961
Aor51HI	AGCGCT	1 cut(s)	541
AoxI	GGCC	4 cut(s)	3, 240, 905, 935
ApeKI	GCWGC	3 cut(s)	23, 434, 812
ApoI	RAATTY	1 cut(s)	386
AspLEI	GCGC	2 cut(s)	542, 946
AspS9I	GGNCC	1 cut(s)	220
AsuHPI	GGTGA	5 cut(s)	71, 295, 457, 598, 1030
AvaII	GGWCC	1 cut(s)	220
BalI	TGGCCA	3 cut(s)	242, 907, 937
BanI	GGYRCC	1 cut(s)	1072
BbsI	GAAGAC	1 cut(s)	345
BbvI	GCAGC	3 cut(s)	35, 446, 824
BccI	CCATC	3 cut(s)	17, 98, 878
BcgI	CGANNNNNNTGC	2 cut(s)	165, 199
BciT130I	CCWGG	1 cut(s)	476
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	1 cut(s)	543
BfuAI	ACCTGC	1 cut(s)	138
BisI	GCNGC	7 cut(s)	6, 24, 75, 320, 420, 435, 813
BlsI	GCNGC	7 cut(s)	7, 25, 76, 321, 421, 436, 814
Bme1390I	CCNGG	1 cut(s)	476
Bme18I	GGWCC	1 cut(s)	220
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	3 cut(s)	712, 777, 1074
BmrFI	CCNGG	1 cut(s)	476
BmrI	ACTGGG	1 cut(s)	563
BmsI	GCATC	1 cut(s)	955
BmuI	ACTGGG	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	556
Bpu10I	CCTNAGC	1 cut(s)	677
BpuEI	CTTGAG	1 cut(s)	542
BsaJI	CCNNGG	1 cut(s)	706
BsaWI	WCCGGW	1 cut(s)	196
Bse1I	ACTGG	7 cut(s)	488, 539, 569, 623, 733, 770, 1092
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	476
BseDI	CCNNGG	1 cut(s)	706
BseGI	GGATG	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	4 cut(s)	41, 526, 691, 1059
BseNI	ACTGG	7 cut(s)	488, 539, 569, 623, 733, 770, 1092
BseRI	GAGGAG	1 cut(s)	758
BseXI	GCAGC	3 cut(s)	35, 446, 824
Bsh1285I	CGRYCG	3 cut(s)	171, 214, 664
BshFI	GGCC	4 cut(s)	5, 242, 907, 937
BshNI	GGYRCC	1 cut(s)	1072
BsiEI	CGRYCG	3 cut(s)	171, 214, 664
BsiSI	CCGG	1 cut(s)	197
BsiWI	CGTACG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	4 cut(s)	5, 242, 907, 937
Bsp143I	GATC	3 cut(s)	268, 507, 966
Bsp19I	CCATGG	1 cut(s)	706
BspACI	CCGC	7 cut(s)	6, 75, 167, 264, 297, 319, 420
BspANI	GGCC	4 cut(s)	5, 242, 907, 937
BspCNI	CTCAG	4 cut(s)	40, 525, 690, 1060
BspLI	GGNNCC	3 cut(s)	712, 777, 1074
BspMI	ACCTGC	1 cut(s)	138
BspPI	GGATC	3 cut(s)	276, 502, 961
BspT107I	GGYRCC	1 cut(s)	1072
BsrBI	CCGCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	7 cut(s)	488, 539, 569, 623, 733, 770, 1092
BssECI	CCNNGG	1 cut(s)	706
BssMI	GATC	3 cut(s)	268, 507, 966
BssT1I	CCWWGG	1 cut(s)	706
Bst2UI	CCWGG	1 cut(s)	476
Bst4CI	ACNGT	7 cut(s)	215, 469, 630, 665, 805, 841, 1001
Bst6I	CTCTTC	1 cut(s)	174
BstC8I	GCNNGC	2 cut(s)	244, 432
BstDEI	CTNAG	5 cut(s)	27, 456, 512, 677, 1068
BstDSI	CCRYGG	1 cut(s)	706
BstEII	GGTNACC	1 cut(s)	463
BstF5I	GGATG	1 cut(s)	9
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	2 cut(s)	542, 946
BstKTI	GATC	3 cut(s)	271, 510, 969
BstMBI	GATC	3 cut(s)	268, 507, 966
BstMCI	CGRYCG	3 cut(s)	171, 214, 664
BstMWI	GCNNNNNNNGC	2 cut(s)	788, 943
BstNI	CCWGG	1 cut(s)	476
BstPI	GGTNACC	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	609
BstV1I	GCAGC	3 cut(s)	35, 446, 824
BstV2I	GAAGAC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	507
BstXI	CCANNNNNNTGG	1 cut(s)	250
BstYI	RGATCY	1 cut(s)	507
BsuRI	GGCC	4 cut(s)	5, 242, 907, 937
BtgI	CCRYGG	1 cut(s)	706
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	635
BveI	ACCTGC	1 cut(s)	138
Cac8I	GCNNGC	2 cut(s)	244, 432
CfoI	GCGC	2 cut(s)	542, 946
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	3 cut(s)	216, 441, 604
CspCI	CAANNNNNGTGG	2 cut(s)	749, 784
CviAII	CATG	2 cut(s)	488, 707
CviQI	GTAC	3 cut(s)	216, 441, 604
DdeI	CTNAG	5 cut(s)	27, 456, 512, 677, 1068
DpnI	GATC	3 cut(s)	270, 509, 968
DpnII	GATC	3 cut(s)	268, 507, 966
EaeI	YGGCCR	4 cut(s)	3, 240, 905, 935
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	706
Eco47I	GGWCC	1 cut(s)	220
Eco47III	AGCGCT	1 cut(s)	541
Eco57I	CTGAAG	1 cut(s)	1101
Eco91I	GGTNACC	1 cut(s)	463
EcoO65I	GGTNACC	1 cut(s)	463
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	706
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	2 cut(s)	491, 710
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	2 cut(s)	487, 706
FauI	CCCGC	2 cut(s)	257, 290
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	7 cut(s)	6, 24, 75, 320, 420, 435, 813
Fsp4HI	GCNGC	7 cut(s)	6, 24, 75, 320, 420, 435, 813
FspI	TGCGCA	1 cut(s)	945
GlaI	GCGC	2 cut(s)	541, 945
GluI	GCNGC	7 cut(s)	6, 24, 75, 320, 420, 435, 813
GsuI	CTGGAG	1 cut(s)	556
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	4 cut(s)	5, 242, 907, 937
HapII	CCGG	1 cut(s)	197
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	2 cut(s)	542, 946
Hin1II	CATG	2 cut(s)	491, 710
Hin6I	GCGC	2 cut(s)	540, 944
HinP1I	GCGC	2 cut(s)	540, 944
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HindIII	AAGCTT	1 cut(s)	929
HinfI	GANTC	4 cut(s)	193, 286, 496, 863
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	5 cut(s)	71, 295, 457, 598, 1030
Hpy166II	GTNNAC	5 cut(s)	472, 604, 668, 887, 997
Hpy188I	TCNGA	6 cut(s)	30, 211, 305, 515, 1054, 1069
Hpy188III	TCNNGA	6 cut(s)	46, 94, 391, 559, 669, 1115
Hpy8I	GTNNAC	5 cut(s)	472, 604, 668, 887, 997
Hpy99I	CGWCG	2 cut(s)	473, 1102
HpyAV	CCTTC	6 cut(s)	224, 254, 326, 632, 766, 802
HpyCH4III	ACNGT	7 cut(s)	215, 469, 630, 665, 805, 841, 1001
HpyCH4V	TGCA	2 cut(s)	434, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	788, 943
HpyF3I	CTNAG	5 cut(s)	27, 456, 512, 677, 1068
Hsp92II	CATG	2 cut(s)	491, 710
HspAI	GCGC	2 cut(s)	540, 944
Kzo9I	GATC	3 cut(s)	268, 507, 966
LmnI	GCTCC	4 cut(s)	212, 305, 537, 745
Lsp1109I	GCAGC	3 cut(s)	35, 446, 824
LweI	GCATC	1 cut(s)	955
MaeIII	GTNAC	3 cut(s)	463, 952, 1018
MalI	GATC	3 cut(s)	270, 509, 968
MbiI	CCGCTC	1 cut(s)	77
MboI	GATC	3 cut(s)	268, 507, 966
MboII	GAAGA	3 cut(s)	191, 345, 1094
MflI	RGATCY	1 cut(s)	507
MlsI	TGGCCA	3 cut(s)	242, 907, 937
MluCI	AATT	2 cut(s)	386, 816
MluNI	TGGCCA	3 cut(s)	242, 907, 937
MlyI	GAGTC	2 cut(s)	295, 490
MmeI	TCCRAC	4 cut(s)	234, 343, 473, 673
Mox20I	TGGCCA	3 cut(s)	242, 907, 937
MscI	TGGCCA	3 cut(s)	242, 907, 937
Msp20I	TGGCCA	3 cut(s)	242, 907, 937
MspA1I	CMGCKG	2 cut(s)	437, 1079
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	1 cut(s)	476
MwoI	GCNNNNNNNGC	2 cut(s)	788, 943
NcoI	CCATGG	1 cut(s)	706
NdeII	GATC	3 cut(s)	268, 507, 966
NlaIII	CATG	2 cut(s)	491, 710
NlaIV	GGNNCC	3 cut(s)	712, 777, 1074
NmeAIII	GCCGAG	1 cut(s)	143
NmuCI	GTSAC	2 cut(s)	463, 1018
NsbI	TGCGCA	1 cut(s)	945
PaqCI	CACCTGC	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PctI	GAATGC	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	193, 863
Pfl23II	CGTACG	1 cut(s)	215
PkrI	GCNGC	7 cut(s)	7, 25, 76, 321, 421, 436, 814
PleI	GAGTC	2 cut(s)	294, 490
PpsI	GAGTC	2 cut(s)	294, 490
Psp6I	CCWGG	1 cut(s)	474
PspEI	GGTNACC	1 cut(s)	463
PspGI	CCWGG	1 cut(s)	474
PspLI	CGTACG	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	712, 777, 1074
PspPI	GGNCC	1 cut(s)	220
PsrI	GAACNNNNNNTAC	2 cut(s)	815, 847
PsuI	RGATCY	1 cut(s)	507
PvuII	CAGCTG	2 cut(s)	437, 1079
RsaI	GTAC	3 cut(s)	217, 442, 605
RsaNI	GTAC	3 cut(s)	216, 441, 604
SalI	GTCGAC	1 cut(s)	470
SatI	GCNGC	7 cut(s)	6, 24, 75, 320, 420, 435, 813
Sau3AI	GATC	3 cut(s)	268, 507, 966
Sau96I	GGNCC	1 cut(s)	220
SchI	GAGTC	2 cut(s)	295, 490
ScrFI	CCNGG	1 cut(s)	476
SfaNI	GCATC	1 cut(s)	955
SfcI	CTRYAG	1 cut(s)	609
SinI	GGWCC	1 cut(s)	220
SmlI	CTYRAG	2 cut(s)	557, 1115
SmoI	CTYRAG	2 cut(s)	557, 1115
Sse9I	AATT	2 cut(s)	386, 816
SsiI	CCGC	7 cut(s)	6, 75, 167, 264, 297, 319, 420
StyD4I	CCNGG	1 cut(s)	474
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	7 cut(s)	215, 469, 630, 665, 805, 841, 1001
TaqI	TCGA	7 cut(s)	171, 390, 471, 660, 795, 975, 1100
TasI	AATT	2 cut(s)	386, 816
TatI	WGTACW	1 cut(s)	603
TauI	GCSGC	4 cut(s)	8, 77, 322, 422
TfiI	GAWTC	2 cut(s)	193, 863
TscAI	CASTG	1 cut(s)	635
TseFI	GTSAC	2 cut(s)	463, 1018
TseI	GCWGC	3 cut(s)	23, 434, 812
Tsp45I	GTSAC	2 cut(s)	463, 1018
TspDTI	ATGAA	2 cut(s)	191, 1059
TspGWI	ACGGA	1 cut(s)	233
TspRI	CASTG	1 cut(s)	635
VpaK11BI	GGWCC	1 cut(s)	220
XapI	RAATTY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.