Rorug05G0148900

Mpv17 / PMP22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012834
Physical Location & Seq
Forward (+)
13822733 .. 13824006
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0148900.1

Sequence Viewer

Length: 1020 bp
ATGATGCAAAATCTGCATTGCAATTTCTTCTTCGTGCTTTCCAGCATTTTTTTCTCTACTACTTTGGCTCTTCCATGGAGCCAAAGCAGAGAGTTCAACCAAGCCAAAAACTATGAGGGCTCTTCTGATTTTGTGGACCTTCAGTACCACATGGGTCCTGTCCTTGCTTCTTCTCCAATCAACGTTTACATTATTTGGTATGGGAATTGGAACCCAACTCACCAATCCACCATTAGAGATTTCATCTACTCACTCTCTTCACCAGCCCCTTACCCTTCTGTTTCTGATTGGTGGAAGACTGTGAGGCTCTACACTGATCAAACTGGCTCAAACATCACTGGGACTATTTCTCTTTCTGGTGAGTTCTATGACTCTAAGTACTCCCATGGCGGTTCTCTTAGCCGATTGTCAATGCAATCCATCATCAAGCATGCTGTCACTTCATCATATCCGAGAGCATTACCTCTCAATCCAAACAATGGTCTCTACTTAGTTCTAACATCTTCTGATGTTAAAGTTCAAGATTTCTGTAGAGCAGTGTGTGGTTTTCACTACTTCACATTTCCAACCATTGTTGGTGTCACTATGCCTTATGCTTGGGTTGGTTACAGTGGGAAGCAATGTCCTGGCATCTGCGCATACCCGTTTGCATGGCCCAAGTACTCAGGCAGGCCACCACCTAGCACAAATGGAGGTAACAACATAATGAAAGCGCCGAATGGCGATCCGGGTGTTGATGGGATGATCAGTGTGCTAGCTCATGAGCTAGCAGAAGTGTCAAGCAACCCACTTGTGAATGCTTGGTATGCAGGTGATGACCCAACTGCACCAACTGAAATAGCAGATTTGTGTATGGGGGTTTATGGGAGTGGTGGGGGTGGTGGGTATGTTGGGGTAGTGTCTAAGGACAGATGGGGAAATGGGTATAATGTGAATGGGGTGAAGGGTAGAAAGTTCATGGTGCAATGGGTGTGGAACCCTGTGAAAAGAAGATGCTTTGGTCCCAATGCTATGGATTAG

Protein Analysis

339

Amino Acids

37.36

Weight (kDa)

8.08

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 47 - 334 2.5e-100 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012834)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52870 AT1G52870
fragaria_vesca FvH4_3g20720
malus_domestica MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica Prupe.4G187300_v2.0.a1
pyrus_communis pycom03g17100 pycom11g21150
rosa_chinensis RchiOBHm_Chr5g0034871
rosa_laevigata RLG00000033582
rosa_multiflora Rmu_sc0002460.1_g000037
rosa_roxburghii Rroxscaffold_1G00045460
rosa_rugosa Rorug05G0148900
rosa_samantha Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana Rw5G022050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 800
Acc16I TGCGCA 1 cut(s) 637
Acc36I ACCTGC 1 cut(s) 800
AccB7I CCANNNNNTGG 1 cut(s) 479
AciI CCGC 1 cut(s) 390
AclI AACGTT 1 cut(s) 183
AclWI GGATC 1 cut(s) 719
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 3 cut(s) 146, 380, 662
AfiI CCNNNNNNNGG 1 cut(s) 479
AgsI TTSAA 2 cut(s) 97, 521
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 2 cut(s) 758, 766
AluI AGCT 2 cut(s) 758, 766
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 1 cut(s) 719
AoxI GGCC 2 cut(s) 653, 671
AspLEI GCGC 2 cut(s) 638, 715
AspS9I GGNCC 4 cut(s) 136, 155, 654, 1001
AsuC2I CCSGG 1 cut(s) 729
AsuHPI GGTGA 5 cut(s) 212, 252, 371, 824, 952
AsuNHI GCTAGC 2 cut(s) 754, 766
AvaII GGWCC 3 cut(s) 136, 155, 1001
BanII GRGCYC 1 cut(s) 122
BbsI GAAGAC 1 cut(s) 302
BccI CCATC 3 cut(s) 428, 731, 906
BciT130I CCWGG 1 cut(s) 627
BclI TGATCA 2 cut(s) 316, 744
BcnI CCSGG 1 cut(s) 729
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 3 cut(s) 681, 755, 767
BfmI CTRYAG 1 cut(s) 529
BfoI RGCGCY 1 cut(s) 716
BfuAI ACCTGC 1 cut(s) 800
BmcAI AGTACT 2 cut(s) 380, 662
Bme1390I CCNGG 2 cut(s) 627, 729
Bme18I GGWCC 3 cut(s) 136, 155, 1001
BmgT120I GGNCC 4 cut(s) 136, 155, 654, 1001
BmiI GGNNCC 5 cut(s) 80, 156, 212, 977, 1003
BmrFI CCNGG 2 cut(s) 627, 729
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 2 cut(s) 639, 983
BmtI GCTAGC 2 cut(s) 758, 770
BmuI ACTGGG 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 729
BsaI GGTCTC 1 cut(s) 488
BsaJI CCNNGG 2 cut(s) 74, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse1I ACTGG 2 cut(s) 328, 343
Bse3DI GCAATG 3 cut(s) 16, 626, 971
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 2 cut(s) 74, 385
BseGI GGATG 1 cut(s) 747
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMI GCAATG 3 cut(s) 16, 626, 971
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 2 cut(s) 328, 343
BsgI GTGCAG 1 cut(s) 810
BshFI GGCC 2 cut(s) 655, 673
BsiSI CCGG 1 cut(s) 728
BslFI GGGAC 2 cut(s) 355, 987
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 2 cut(s) 355, 987
BsmI GAATGC 1 cut(s) 802
BsnI GGCC 2 cut(s) 655, 673
Bso31I GGTCTC 1 cut(s) 488
Bsp1286I GDGCHC 1 cut(s) 122
Bsp143I GATC 3 cut(s) 316, 724, 744
Bsp19I CCATGG 2 cut(s) 74, 385
BspACI CCGC 1 cut(s) 390
BspANI GGCC 2 cut(s) 655, 673
BspCNI CTCAG 1 cut(s) 677
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 5 cut(s) 80, 156, 212, 977, 1003
BspMI ACCTGC 1 cut(s) 800
BspOI GCTAGC 2 cut(s) 758, 770
BspPI GGATC 1 cut(s) 719
BspQI GCTCTTC 2 cut(s) 75, 127
BspTNI GGTCTC 1 cut(s) 488
BsrDI GCAATG 3 cut(s) 16, 626, 971
BsrI ACTGG 2 cut(s) 328, 343
BssECI CCNNGG 2 cut(s) 74, 385
BssMI GATC 3 cut(s) 316, 724, 744
BssT1I CCWWGG 2 cut(s) 74, 385
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 2 cut(s) 301, 611
Bst6I CTCTTC 3 cut(s) 75, 127, 262
BstAPI GCANNNNNTGC 1 cut(s) 13
BstC8I GCNNGC 4 cut(s) 432, 671, 756, 768
BstDEI CTNAG 5 cut(s) 375, 398, 490, 664, 903
BstDSI CCRYGG 2 cut(s) 74, 385
BstF5I GGATG 1 cut(s) 747
BstH2I RGCGCY 1 cut(s) 716
BstHHI GCGC 2 cut(s) 638, 715
BstKTI GATC 3 cut(s) 319, 727, 747
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 3 cut(s) 316, 724, 744
BstMWI GCNNNNNNNGC 2 cut(s) 13, 806
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 2 cut(s) 625, 727
BstSFI CTRYAG 1 cut(s) 529
BstV2I GAAGAC 1 cut(s) 302
BstXI CCANNNNNNTGG 1 cut(s) 1012
BsuRI GGCC 2 cut(s) 655, 673
BtgI CCRYGG 2 cut(s) 74, 385
BtsCI GGATG 1 cut(s) 747
BtsI GCAGTG 1 cut(s) 543
BtsIMutI CAGTG 5 cut(s) 312, 336, 543, 616, 754
BveI ACCTGC 1 cut(s) 800
Cac8I GCNNGC 4 cut(s) 432, 671, 756, 768
CciI TCATGA 1 cut(s) 760
CfoI GCGC 2 cut(s) 638, 715
Cfr13I GGNCC 4 cut(s) 136, 155, 654, 1001
Csp6I GTAC 3 cut(s) 145, 379, 661
CspCI CAANNNNNGTGG 2 cut(s) 953, 988
CviAII CATG 7 cut(s) 75, 151, 386, 431, 651, 761, 958
CviQI GTAC 3 cut(s) 145, 379, 661
DdeI CTNAG 5 cut(s) 375, 398, 490, 664, 903
DpnI GATC 3 cut(s) 318, 726, 746
DpnII GATC 3 cut(s) 316, 724, 744
Eam1104I CTCTTC 3 cut(s) 75, 127, 262
EarI CTCTTC 3 cut(s) 75, 127, 262
Eco130I CCWWGG 2 cut(s) 74, 385
Eco24I GRGCYC 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 488
Eco47I GGWCC 3 cut(s) 136, 155, 1001
Eco57I CTGAAG 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 2 cut(s) 74, 385
EcoT38I GRGCYC 1 cut(s) 122
ErhI CCWWGG 2 cut(s) 74, 385
FaeI CATG 7 cut(s) 78, 154, 389, 434, 654, 764, 961
FaqI GGGAC 2 cut(s) 355, 987
FatI CATG 7 cut(s) 74, 150, 385, 430, 650, 760, 957
FbaI TGATCA 2 cut(s) 316, 744
FokI GGATG 1 cut(s) 754
FriOI GRGCYC 1 cut(s) 122
FspBI CTAG 3 cut(s) 681, 755, 767
FspI TGCGCA 1 cut(s) 637
GlaI GCGC 2 cut(s) 637, 714
HaeII RGCGCY 1 cut(s) 716
HaeIII GGCC 2 cut(s) 655, 673
HapII CCGG 1 cut(s) 728
HhaI GCGC 2 cut(s) 638, 715
Hin1II CATG 7 cut(s) 78, 154, 389, 434, 654, 764, 961
Hin6I GCGC 2 cut(s) 636, 713
HinP1I GCGC 2 cut(s) 636, 713
HinfI GANTC 1 cut(s) 371
HpaII CCGG 1 cut(s) 728
HphI GGTGA 5 cut(s) 212, 252, 371, 824, 952
Hpy166II GTNNAC 2 cut(s) 136, 187
Hpy188I TCNGA 4 cut(s) 127, 286, 453, 508
Hpy188III TCNNGA 2 cut(s) 521, 761
Hpy8I GTNNAC 2 cut(s) 136, 187
HpyAV CCTTC 3 cut(s) 149, 285, 937
HpyCH4III ACNGT 2 cut(s) 301, 611
HpyCH4IV ACGT 1 cut(s) 183
HpyCH4V TGCA 8 cut(s) 7, 16, 21, 415, 650, 809, 827, 964
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 806
HpyF3I CTNAG 5 cut(s) 375, 398, 490, 664, 903
HpySE526I ACGT 1 cut(s) 183
Hsp92II CATG 7 cut(s) 78, 154, 389, 434, 654, 764, 961
HspAI GCGC 2 cut(s) 636, 713
Ksp22I TGATCA 2 cut(s) 316, 744
Kzo9I GATC 3 cut(s) 316, 724, 744
LguI GCTCTTC 2 cut(s) 75, 127
LmnI GCTCC 1 cut(s) 78
LweI GCATC 2 cut(s) 639, 983
MaeI CTAG 3 cut(s) 681, 755, 767
MaeII ACGT 1 cut(s) 183
MaeIII GTNAC 4 cut(s) 436, 580, 605, 695
MalI GATC 3 cut(s) 318, 726, 746
MboI GATC 3 cut(s) 316, 724, 744
MboII GAAGA 9 cut(s) 19, 22, 62, 114, 162, 249, 307, 495, 1002
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 2 cut(s) 22, 205
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 590
MnlI CCTC 4 cut(s) 109, 297, 474, 686
MseI TTAA 1 cut(s) 513
MspI CCGG 1 cut(s) 728
MspR9I CCNGG 2 cut(s) 627, 729
Mva1269I GAATGC 1 cut(s) 802
MvaI CCWGG 1 cut(s) 627
MwoI GCNNNNNNNGC 2 cut(s) 13, 806
NciI CCSGG 1 cut(s) 729
NcoI CCATGG 2 cut(s) 74, 385
NdeII GATC 3 cut(s) 316, 724, 744
NheI GCTAGC 2 cut(s) 754, 766
NlaIII CATG 7 cut(s) 78, 154, 389, 434, 654, 764, 961
NlaIV GGNNCC 5 cut(s) 80, 156, 212, 977, 1003
NmuCI GTSAC 2 cut(s) 436, 580
NsbI TGCGCA 1 cut(s) 637
NspI RCATGY 1 cut(s) 434
PaeI GCATGC 1 cut(s) 434
PagI TCATGA 1 cut(s) 760
PaqCI CACCTGC 1 cut(s) 800
PciSI GCTCTTC 2 cut(s) 75, 127
PctI GAATGC 1 cut(s) 802
PflMI CCANNNNNTGG 1 cut(s) 479
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 155
Psp1406I AACGTT 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 5 cut(s) 80, 156, 212, 977, 1003
PspPI GGNCC 4 cut(s) 136, 155, 654, 1001
PspPPI RGGWCCY 1 cut(s) 155
RsaI GTAC 3 cut(s) 146, 380, 662
RsaNI GTAC 3 cut(s) 145, 379, 661
SapI GCTCTTC 2 cut(s) 75, 127
SaqAI TTAA 1 cut(s) 513
Sau3AI GATC 3 cut(s) 316, 724, 744
Sau96I GGNCC 4 cut(s) 136, 155, 654, 1001
ScaI AGTACT 2 cut(s) 380, 662
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 627, 729
SduI GDGCHC 1 cut(s) 122
SetI ASST 8 cut(s) 141, 186, 466, 682, 697, 760, 768, 814
SfaNI GCATC 2 cut(s) 639, 983
SfcI CTRYAG 1 cut(s) 529
SinI GGWCC 3 cut(s) 136, 155, 1001
SphI GCATGC 1 cut(s) 434
Sse9I AATT 2 cut(s) 22, 205
SsiI CCGC 1 cut(s) 390
SspMI CTAG 3 cut(s) 681, 755, 767
StyD4I CCNGG 2 cut(s) 625, 727
StyI CCWWGG 2 cut(s) 74, 385
TaaI ACNGT 2 cut(s) 301, 611
TaiI ACGT 1 cut(s) 186
TasI AATT 2 cut(s) 22, 205
TatI WGTACW 2 cut(s) 378, 660
Tru1I TTAA 1 cut(s) 513
Tru9I TTAA 1 cut(s) 513
TscAI CASTG 5 cut(s) 319, 343, 543, 616, 754
TseFI GTSAC 2 cut(s) 436, 580
Tsp45I GTSAC 2 cut(s) 436, 580
TspDTI ATGAA 4 cut(s) 232, 432, 722, 946
TspRI CASTG 5 cut(s) 319, 343, 543, 616, 754
Van91I CCANNNNNTGG 1 cut(s) 479
VpaK11BI GGWCC 3 cut(s) 136, 155, 1001
XceI RCATGY 1 cut(s) 434
XspI CTAG 3 cut(s) 681, 755, 767
ZrmI AGTACT 2 cut(s) 380, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.