FvH4_3g20720

Mpv17 / PMP22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012834
Physical Location & Seq
Reverse (-)
13769334 .. 13773818
4485 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20720.t1

Sequence Viewer

Length: 1134 bp
ATGGCGTCCATCCACGCCATAGCTCCCCAGAGCTTCCTCAACCTCCCAAACCCCAAACCCAGAAAACCCATCACCCCCCACTCAAAACCCACTTCAAGTTCCAATCTTTACACCCTTAAACCCCCAAAGACCCAATCTTTCCCCTCAAGGAAACCCACCCGGGTCCTCACCTCCGTCGCCGACCACCACCATGACGTCATCCCGGTACAGAGCTCCGACTGCGTTGACCAGCAGGAAGGGATGGTGGTGAGCAGGGCAGAGTGTGAGGGTGTGGAGAGCGAGTTGGCGAGTCAGGTTGGTGGGTTTGGGGCGAGTGAGGGGAGGCTCTCGTTTGAAGGGGCTGGTGGGTTTGGGTCTTCTTCTTCTGGGGTTGGAAATGAGAGAGGGAATGAGGAGTTATATAGGCTTGTGGATAGGAGTATTAATGCCACTATTGTGCTTGCTGCTGGCAGTTTTGCTCTTACTAAGTTGCTTACTATTGATCAGGATTATTGGCATGGATGGACTATATATGAGATCTTAAGATATGCACCTCAACATAATTGGACTGCTTATGAGGAAGCACTTAAGGCTAATCCAGTTTTAGCCAAAATGGTAATTAGTGGTGTTGTATACTCTCTCGGTGACTGGATTGCACAGTGCTTTGAAGGAAAACCTTTATTTGAGTTCGACCGGGCACGAATGTTCAGATCTGGGCTTGTTGGCTTTACTCTCCATGGTTCCCTATCGCACTATTATTACCAGATTTGTGAGGAGCTTTTTCCTTTCCAAGGCTGGTGGGTGGTTCCTGTCAAAGTAGCCTTTGACCAAACTATATGGGCAGCAATTTGGAACAGCATTTACTTTACAGTTTTGGGATTTTTGCGTCTTGAATCTCCTATCAATATATATAGTGAACTGAAAGCGACATTCTGGCCAATGCTGACTGCAGGTTGGAAGCTGTGGCCATTTGCTCATCTTGTTACCTATGGTCTGATCCCCGTCGAACAAAGGCTCTTATGGGTGGACTGTGTAGAGTTAATTTGGGTGACTATTCTATCAACTTATTCAAATGAAAAGTCGGAAGCAAGGATTTCTGACGCACCAGCTGAAGCAAGTTCCAACTCTCCAAACATAAGTCCTCTTGAGGAGTAA

Protein Analysis

378

Amino Acids

42.11

Weight (kDa)

5.62

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 287 - 347 1.1e-17 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012834)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52870 AT1G52870
fragaria_vesca FvH4_3g20720
malus_domestica MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica Prupe.4G187300_v2.0.a1
pyrus_communis pycom03g17100 pycom11g21150
rosa_chinensis RchiOBHm_Chr5g0034871
rosa_laevigata RLG00000033582
rosa_multiflora Rmu_sc0002460.1_g000037
rosa_roxburghii Rroxscaffold_1G00045460
rosa_rugosa Rorug05G0148900
rosa_samantha Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana Rw5G022050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
Acc36I ACCTGC 1 cut(s) 920
AccI GTMKAC 1 cut(s) 612
AclWI GGATC 1 cut(s) 970
AcoI YGGCCR 2 cut(s) 914, 944
AcuI CTGAAG 1 cut(s) 1110
AcyI GRCGYC 2 cut(s) 5, 195
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 770
AflII CTTAAG 2 cut(s) 520, 566
AgsI TTSAA 5 cut(s) 96, 335, 647, 872, 1050
AleI CACNNNNGTG 1 cut(s) 434
AluBI AGCT 6 cut(s) 23, 33, 213, 757, 940, 1088
AluI AGCT 6 cut(s) 23, 33, 213, 757, 940, 1088
Alw21I GWGCWC 1 cut(s) 215
AlwI GGATC 1 cut(s) 970
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 2 cut(s) 914, 944
ApeKI GCWGC 2 cut(s) 443, 821
ArsI GACNNNNNNTTYG 2 cut(s) 1043, 1075
AseI ATTAAT 1 cut(s) 423
AspS9I GGNCC 1 cut(s) 163
AsuC2I CCSGG 4 cut(s) 160, 161, 203, 674
AsuHPI GGTGA 5 cut(s) 64, 160, 259, 635, 1039
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 1 cut(s) 163
BaeGI GKGCMC 1 cut(s) 679
BalI TGGCCA 2 cut(s) 916, 946
BanII GRGCYC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 430, 833
BccI CCATC 4 cut(s) 17, 77, 235, 495
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 4 cut(s) 160, 161, 203, 674
BfmI CTRYAG 1 cut(s) 927
BfrI CTTAAG 2 cut(s) 520, 566
BfuAI ACCTGC 1 cut(s) 920
BglII AGATCT 2 cut(s) 516, 689
BisI GCNGC 2 cut(s) 444, 822
BlsI GCNGC 2 cut(s) 445, 823
Bme1390I CCNGG 4 cut(s) 160, 161, 203, 674
Bme18I GGWCC 1 cut(s) 163
BmeT110I CYCGRG 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 163
BmiI GGNNCC 3 cut(s) 164, 721, 786
BmrFI CCNGG 4 cut(s) 160, 161, 203, 674
BpiI GAAGAC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 130
BpuMI CCSGG 4 cut(s) 160, 161, 203, 674
BsaHI GRCGYC 2 cut(s) 5, 195
BsaJI CCNNGG 3 cut(s) 159, 715, 769
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 770
Bse1I ACTGG 2 cut(s) 578, 632
BseDI CCNNGG 3 cut(s) 159, 715, 769
BseGI GGATG 4 cut(s) 9, 198, 246, 506
BseLI CCNNNNNNNGG 1 cut(s) 770
BseNI ACTGG 2 cut(s) 578, 632
BseRI GAGGAG 2 cut(s) 407, 767
BseSI GKGCMC 1 cut(s) 679
BseXI GCAGC 2 cut(s) 430, 833
Bsh1285I CGRYCG 1 cut(s) 673
BshFI GGCC 2 cut(s) 916, 946
BsiEI CGRYCG 1 cut(s) 673
BsiHKAI GWGCWC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 3 cut(s) 160, 203, 673
BslI CCNNNNNNNGG 1 cut(s) 770
BsnI GGCC 2 cut(s) 916, 946
BsoBI CYCGRG 1 cut(s) 159
Bsp1286I GDGCHC 2 cut(s) 215, 679
Bsp143I GATC 4 cut(s) 481, 516, 689, 975
Bsp19I CCATGG 1 cut(s) 715
BspANI GGCC 2 cut(s) 916, 946
BspLI GGNNCC 3 cut(s) 164, 721, 786
BspMAI CTGCAG 1 cut(s) 931
BspMI ACCTGC 1 cut(s) 920
BspPI GGATC 1 cut(s) 970
BspTI CTTAAG 2 cut(s) 520, 566
BsrI ACTGG 2 cut(s) 578, 632
BssECI CCNNGG 3 cut(s) 159, 715, 769
BssMI GATC 4 cut(s) 481, 516, 689, 975
BssNAI GTATAC 1 cut(s) 613
BssNI GRCGYC 2 cut(s) 5, 195
BssT1I CCWWGG 2 cut(s) 715, 769
Bst1107I GTATAC 1 cut(s) 613
Bst4CI ACNGT 3 cut(s) 639, 850, 1010
BstACI GRCGYC 2 cut(s) 5, 195
BstAFI CTTAAG 2 cut(s) 520, 566
BstC8I GCNNGC 2 cut(s) 441, 448
BstDEI CTNAG 1 cut(s) 465
BstDSI CCRYGG 1 cut(s) 715
BstENI CCTNNNNNAGG 1 cut(s) 768
BstF5I GGATG 4 cut(s) 9, 198, 246, 506
BstKTI GATC 4 cut(s) 484, 519, 692, 978
BstMBI GATC 4 cut(s) 481, 516, 689, 975
BstMCI CGRYCG 1 cut(s) 673
BstMWI GCNNNNNNNGC 2 cut(s) 219, 569
BstSCI CCNGG 4 cut(s) 158, 159, 201, 672
BstSFI CTRYAG 1 cut(s) 927
BstSLI GKGCMC 1 cut(s) 679
BstV1I GCAGC 2 cut(s) 430, 833
BstV2I GAAGAC 1 cut(s) 348
BstX2I RGATCY 2 cut(s) 516, 689
BstYI RGATCY 2 cut(s) 516, 689
BstZ17I GTATAC 1 cut(s) 613
BsuRI GGCC 2 cut(s) 916, 946
BtgI CCRYGG 1 cut(s) 715
BtsCI GGATG 4 cut(s) 9, 198, 246, 506
BtsIMutI CAGTG 1 cut(s) 644
BveI ACCTGC 1 cut(s) 920
Cac8I GCNNGC 2 cut(s) 441, 448
Cfr13I GGNCC 1 cut(s) 163
Cfr9I CCCGGG 1 cut(s) 159
CseI GACGC 2 cut(s) 854, 1088
Csp6I GTAC 1 cut(s) 206
CspCI CAANNNNNGTGG 2 cut(s) 758, 793
CviAII CATG 3 cut(s) 191, 497, 716
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 1 cut(s) 465
DpnI GATC 4 cut(s) 483, 518, 691, 977
DpnII GATC 4 cut(s) 481, 516, 689, 975
EaeI YGGCCR 2 cut(s) 914, 944
Ecl136II GAGCTC 1 cut(s) 213
Eco130I CCWWGG 2 cut(s) 715, 769
Eco24I GRGCYC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 1110
Eco88I CYCGRG 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 768
EcoO109I RGGNCCY 1 cut(s) 163
EcoT14I CCWWGG 2 cut(s) 715, 769
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 2 cut(s) 715, 769
FaeI CATG 3 cut(s) 194, 500, 719
FatI CATG 3 cut(s) 190, 496, 715
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 1 cut(s) 612
Fnu4HI GCNGC 2 cut(s) 444, 822
FokI GGATG 3 cut(s) 185, 253, 513
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 2 cut(s) 444, 822
GluI GCNGC 2 cut(s) 444, 822
HaeIII GGCC 2 cut(s) 916, 946
HapII CCGG 3 cut(s) 160, 203, 673
HgaI GACGC 2 cut(s) 854, 1088
Hin1I GRCGYC 2 cut(s) 5, 195
Hin1II CATG 3 cut(s) 194, 500, 719
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 289, 872
HpaII CCGG 3 cut(s) 160, 203, 673
HphI GGTGA 5 cut(s) 64, 160, 259, 635, 1039
Hpy166II GTNNAC 4 cut(s) 226, 613, 896, 1006
Hpy188I TCNGA 5 cut(s) 217, 689, 975, 1063, 1078
Hpy188III TCNNGA 3 cut(s) 485, 869, 1124
Hpy8I GTNNAC 4 cut(s) 226, 613, 896, 1006
Hpy99I CGWCG 2 cut(s) 179, 986
HpyAV CCTTC 3 cut(s) 230, 329, 641
HpyCH4III ACNGT 3 cut(s) 639, 850, 1010
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 530, 635, 929
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 569
HpyF3I CTNAG 1 cut(s) 465
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 2 cut(s) 5, 195
Hsp92II CATG 3 cut(s) 194, 500, 719
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 4 cut(s) 481, 516, 689, 975
LmnI GCTCC 3 cut(s) 28, 218, 754
Lsp1109I GCAGC 2 cut(s) 430, 833
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 3 cut(s) 623, 961, 1027
MalI GATC 4 cut(s) 483, 518, 691, 977
MboI GATC 4 cut(s) 481, 516, 689, 975
MboII GAAGA 3 cut(s) 348, 351, 354
MflI RGATCY 2 cut(s) 516, 689
MhlI GDGCHC 2 cut(s) 215, 679
MlsI TGGCCA 2 cut(s) 916, 946
MluCI AATT 4 cut(s) 541, 597, 825, 1020
MluNI TGGCCA 2 cut(s) 916, 946
MlyI GAGTC 1 cut(s) 298
MmeI TCCRAC 5 cut(s) 240, 352, 914, 1041, 1125
Mox20I TGGCCA 2 cut(s) 916, 946
MscI TGGCCA 2 cut(s) 916, 946
MseI TTAA 5 cut(s) 117, 423, 521, 567, 1019
MslI CAYNNNNRTG 2 cut(s) 189, 434
Msp20I TGGCCA 2 cut(s) 916, 946
MspA1I CMGCKG 1 cut(s) 1088
MspCI CTTAAG 2 cut(s) 520, 566
MspI CCGG 3 cut(s) 160, 203, 673
MspR9I CCNGG 4 cut(s) 160, 161, 203, 674
MwoI GCNNNNNNNGC 2 cut(s) 219, 569
NciI CCSGG 4 cut(s) 160, 161, 203, 674
NcoI CCATGG 1 cut(s) 715
NdeII GATC 4 cut(s) 481, 516, 689, 975
NlaIII CATG 3 cut(s) 194, 500, 719
NlaIV GGNNCC 3 cut(s) 164, 721, 786
NmuCI GTSAC 2 cut(s) 623, 1027
OliI CACNNNNGTG 1 cut(s) 434
PfeI GAWTC 1 cut(s) 872
PkrI GCNGC 2 cut(s) 445, 823
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
PpuMI RGGWCCY 1 cut(s) 163
PshBI ATTAAT 1 cut(s) 423
Psp124BI GAGCTC 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 163
PspN4I GGNNCC 3 cut(s) 164, 721, 786
PspPI GGNCC 1 cut(s) 163
PspPPI RGGWCCY 1 cut(s) 163
PsrI GAACNNNNNNTAC 2 cut(s) 824, 856
PstI CTGCAG 1 cut(s) 931
PsuI RGATCY 2 cut(s) 516, 689
PvuII CAGCTG 1 cut(s) 1088
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 2 cut(s) 189, 434
SacI GAGCTC 1 cut(s) 215
SaqAI TTAA 5 cut(s) 117, 423, 521, 567, 1019
SatI GCNGC 2 cut(s) 444, 822
Sau3AI GATC 4 cut(s) 481, 516, 689, 975
Sau96I GGNCC 1 cut(s) 163
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 4 cut(s) 160, 161, 203, 674
SduI GDGCHC 2 cut(s) 215, 679
SfcI CTRYAG 1 cut(s) 927
SinI GGWCC 1 cut(s) 163
SmaI CCCGGG 1 cut(s) 161
SmiMI CAYNNNNRTG 2 cut(s) 189, 434
SmlI CTYRAG 4 cut(s) 145, 520, 566, 1124
SmoI CTYRAG 4 cut(s) 145, 520, 566, 1124
Sse9I AATT 4 cut(s) 541, 597, 825, 1020
SstI GAGCTC 1 cut(s) 215
StyD4I CCNGG 4 cut(s) 158, 159, 201, 672
StyI CCWWGG 2 cut(s) 715, 769
TaaI ACNGT 3 cut(s) 639, 850, 1010
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 669, 984
TasI AATT 4 cut(s) 541, 597, 825, 1020
TfiI GAWTC 1 cut(s) 872
Tru1I TTAA 5 cut(s) 117, 423, 521, 567, 1019
Tru9I TTAA 5 cut(s) 117, 423, 521, 567, 1019
TscAI CASTG 1 cut(s) 644
TseFI GTSAC 2 cut(s) 623, 1027
TseI GCWGC 2 cut(s) 443, 821
Tsp45I GTSAC 2 cut(s) 623, 1027
TspDTI ATGAA 1 cut(s) 1068
TspGWI ACGGA 1 cut(s) 163
TspMI CCCGGG 1 cut(s) 159
TspRI CASTG 1 cut(s) 644
Vha464I CTTAAG 2 cut(s) 520, 566
VpaK11BI GGWCC 1 cut(s) 163
VspI ATTAAT 1 cut(s) 423
XagI CCTNNNNNAGG 1 cut(s) 768
XmaI CCCGGG 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 612
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.