Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012834

Physical Location & Seq

Genomic Coordinates Reverse (-)

11147111 .. 11151935

Gene Structure 4825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G187300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCTTCCATCCACTCCATAGCTCCCCAGAGCTTCCTCCCTCTCCCAAACTCCAAACCCAGAAAACCCACTAATGCTCACCCAAAACCCATCTTAAGCTCCAATCTTTGTAACTCCAAACTCTCAAAGAACCAAACTTTCCTGAGAAACAAACGGAAAGACAGGTGGATTTTGAAGTCTCTGGTTGATCAAGAAGAGTGTGATGTGATCCCAGTTCAGAGCACTGACTGTACGGACCAGCAGGAAGGGATGGCTGTGTGCAGGGTGGAGTGTGAAGGTGTGGAGGGCGAGTTGGCGAGTCAGGTAGGTGGGTTTGGAGCAAGTGAGGGAAGGCTTTCCTTTGAAGGAGCTGGTGGGTTTGGATCTTCTGGGGTTGGAAATGAGAGGGAGAGTGAGGAATTTGAGAGGCTCGTAGATAGGACTATCAATGCCACTATTGTGCTCGCAGCTGGTACTTTTGCTATCACTAAGTTGCTCACTATTGATCAGGATTACTGGCATGGTTGGACTCTGTATGAGATCCTAAGATATGCACCTCAACACAACTGGAGTGCTTATGAGGAAGCTCTCAAGACTAACCCAGTTTTAGCCAAAATGGTGATTAGTGGTGTGGTGTATTCTGTAGGGGATTGGATTGCACAGTGCTTTGAAGGAAAACCTCTATTTGAGTTCGATCGTACACGAATGCTCAGGTCAGGTCTTGTTGGATTTACTCTCCATGGTTCCCTCTCTCACTACTATTACCAGTTTTGCGAGGAGCTTATTCCATTCCAAGACTGGTGGGTGGTTCCTGCCAAAGTAGCCTTCGACCAAACAGTATGGGCAGCAATTTGGAACAGCATTTACTTTACCGTTTTGGGATTTTTGCGTTTCGAATCACCCATCGACATTTTTAGTGAACTGAAAGCGACATTCTGGCCCATGCTAACTGCTGGGTGGAAACTTTGGCCATTTGCGCATCTTGTTACCTATGGTGTGATCCCTGTCGAACAAAGGCTCTTATGGGTGGACTGTGTAGAGTTGATCTGGGTGACTATACTGTCAACCTATTCAAATGAAAAATCAGAAGCAAGGATTTCTGAGGCACCAGTTGAAGCAAATTCCAGTTCTTCAAACACAAGTCCTCTTGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

379

Amino Acids

42.62

Weight (kDa)

5.12

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52870 AT1G52870
fragaria_vesca	FvH4_3g20720
malus_domestica	MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica	Prupe.4G187300_v2.0.a1
pyrus_communis	pycom03g17100 pycom11g21150
rosa_chinensis	RchiOBHm_Chr5g0034871
rosa_laevigata	RLG00000033582
rosa_multiflora	Rmu_sc0002460.1_g000037
rosa_roxburghii	Rroxscaffold_1G00045460
rosa_rugosa	Rorug05G0148900
rosa_samantha	Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana	Rw5G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1039
Acc16I	TGCGCA	1 cut(s)	957
AccB1I	GGYRCC	1 cut(s)	1084
AclWI	GGATC	4 cut(s)	202, 370, 514, 973
AcoI	YGGCCR	1 cut(s)	947
AcsI	RAATTY	2 cut(s)	398, 1099
AfaI	GTAC	3 cut(s)	232, 454, 679
AflII	CTTAAG	1 cut(s)	94
AgsI	TTSAA	6 cut(s)	175, 344, 650, 1053, 1094, 1113
AjuI	GAANNNNNNNTTGG	2 cut(s)	788, 820
AleI	CACNNNNGTG	1 cut(s)	437
AluBI	AGCT	7 cut(s)	23, 33, 99, 350, 449, 566, 760
AluI	AGCT	7 cut(s)	23, 33, 99, 350, 449, 566, 760
Alw21I	GWGCWC	2 cut(s)	224, 444
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	4 cut(s)	202, 370, 514, 973
AoxI	GGCC	2 cut(s)	917, 947
ApeKI	GCWGC	2 cut(s)	446, 824
ApoI	RAATTY	2 cut(s)	398, 1099
Asp700I	GAANNNNTTC	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	958
AspS9I	GGNCC	2 cut(s)	235, 918
AsuHPI	GGTGA	4 cut(s)	71, 610, 870, 1042
AsuII	TTCGAA	1 cut(s)	873
AvaII	GGWCC	1 cut(s)	235
BalI	TGGCCA	1 cut(s)	949
BanI	GGYRCC	1 cut(s)	1084
Bbv12I	GWGCWC	2 cut(s)	224, 444
BbvI	GCAGC	2 cut(s)	458, 836
BccI	CCATC	4 cut(s)	17, 98, 244, 890
BclI	TGATCA	2 cut(s)	187, 484
BcoDI	GTCTC	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	621
BfrI	CTTAAG	1 cut(s)	94
BisI	GCNGC	2 cut(s)	447, 825
BlsI	GCNGC	2 cut(s)	448, 826
Bme18I	GGWCC	1 cut(s)	235
BmgT120I	GGNCC	2 cut(s)	235, 918
BmiI	GGNNCC	3 cut(s)	724, 789, 1086
BmrI	ACTGGG	2 cut(s)	206, 575
BmsI	GCATC	1 cut(s)	967
BmuI	ACTGGG	2 cut(s)	206, 575
BpmI	CTGGAG	1 cut(s)	568
Bpu10I	CCTNAGC	1 cut(s)	689
Bpu14I	TTCGAA	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	718
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bse1I	ACTGG	8 cut(s)	212, 500, 551, 581, 745, 782, 1088, 1104
BseDI	CCNNGG	1 cut(s)	718
BseGI	GGATG	2 cut(s)	9, 255
BseMII	CTCAG	3 cut(s)	134, 703, 1071
BseNI	ACTGG	8 cut(s)	212, 500, 551, 581, 745, 782, 1088, 1104
BseRI	GAGGAG	1 cut(s)	770
BseXI	GCAGC	2 cut(s)	458, 836
BseYI	CCCAGC	1 cut(s)	932
BsgI	GTGCAG	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	676
BshFI	GGCC	2 cut(s)	919, 949
BshNI	GGYRCC	1 cut(s)	1084
BsiEI	CGRYCG	1 cut(s)	676
BsiHKAI	GWGCWC	2 cut(s)	224, 444
BsmAI	GTCTC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	690
BsnI	GGCC	2 cut(s)	919, 949
Bsp119I	TTCGAA	1 cut(s)	873
Bsp1286I	GDGCHC	2 cut(s)	224, 444
Bsp143I	GATC	8 cut(s)	187, 207, 362, 484, 519, 673, 978, 1023
Bsp19I	CCATGG	1 cut(s)	718
BspANI	GGCC	2 cut(s)	919, 949
BspCNI	CTCAG	3 cut(s)	135, 702, 1072
BspLI	GGNNCC	3 cut(s)	724, 789, 1086
BspPI	GGATC	4 cut(s)	202, 370, 514, 973
BspT104I	TTCGAA	1 cut(s)	873
BspT107I	GGYRCC	1 cut(s)	1084
BspTI	CTTAAG	1 cut(s)	94
BsrI	ACTGG	8 cut(s)	212, 500, 551, 581, 745, 782, 1088, 1104
BssECI	CCNNGG	1 cut(s)	718
BssMI	GATC	8 cut(s)	187, 207, 362, 484, 519, 673, 978, 1023
BssT1I	CCWWGG	1 cut(s)	718
Bst4CI	ACNGT	6 cut(s)	230, 642, 817, 853, 1013, 1041
Bst6I	CTCTTC	1 cut(s)	189
BstAFI	CTTAAG	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	873
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	5 cut(s)	143, 468, 524, 689, 1080
BstDSI	CCRYGG	1 cut(s)	718
BstF5I	GGATG	2 cut(s)	9, 255
BstHHI	GCGC	1 cut(s)	958
BstKTI	GATC	8 cut(s)	190, 210, 365, 487, 522, 676, 981, 1026
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	8 cut(s)	187, 207, 362, 484, 519, 673, 978, 1023
BstMCI	CGRYCG	1 cut(s)	676
BstMWI	GCNNNNNNNGC	2 cut(s)	800, 955
BstSFI	CTRYAG	1 cut(s)	621
BstV1I	GCAGC	2 cut(s)	458, 836
BstX2I	RGATCY	2 cut(s)	362, 519
BstYI	RGATCY	2 cut(s)	362, 519
BsuRI	GGCC	2 cut(s)	919, 949
BtgI	CCRYGG	1 cut(s)	718
BtsCI	GGATG	2 cut(s)	9, 255
BtsIMutI	CAGTG	2 cut(s)	222, 647
Cac8I	GCNNGC	1 cut(s)	444
CfoI	GCGC	1 cut(s)	958
Cfr13I	GGNCC	2 cut(s)	235, 918
Csp6I	GTAC	3 cut(s)	231, 453, 678
CspCI	CAANNNNNGTGG	2 cut(s)	761, 796
CviAII	CATG	3 cut(s)	500, 719, 922
CviQI	GTAC	3 cut(s)	231, 453, 678
DdeI	CTNAG	5 cut(s)	143, 468, 524, 689, 1080
DpnI	GATC	8 cut(s)	189, 209, 364, 486, 521, 675, 980, 1025
DpnII	GATC	8 cut(s)	187, 207, 362, 484, 519, 673, 978, 1023
DrdI	GACNNNNNNGTC	1 cut(s)	1039
DseDI	GACNNNNNNGTC	1 cut(s)	1039
EaeI	YGGCCR	1 cut(s)	947
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	718
FaeI	CATG	3 cut(s)	503, 722, 925
FatI	CATG	3 cut(s)	499, 718, 921
FbaI	TGATCA	2 cut(s)	187, 484
Fnu4HI	GCNGC	2 cut(s)	447, 825
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	2 cut(s)	447, 825
FspI	TGCGCA	1 cut(s)	957
GlaI	GCGC	1 cut(s)	957
GluI	GCNGC	2 cut(s)	447, 825
GsaI	CCCAGC	1 cut(s)	936
GsuI	CTGGAG	1 cut(s)	568
HaeIII	GGCC	2 cut(s)	919, 949
HhaI	GCGC	1 cut(s)	958
Hin1II	CATG	3 cut(s)	503, 722, 925
Hin6I	GCGC	1 cut(s)	956
HinP1I	GCGC	1 cut(s)	956
HincII	GTYRAC	1 cut(s)	1044
HindII	GTYRAC	1 cut(s)	1044
HinfI	GANTC	3 cut(s)	298, 508, 875
HphI	GGTGA	4 cut(s)	71, 610, 870, 1042
Hpy166II	GTNNAC	4 cut(s)	680, 899, 1009, 1044
Hpy188I	TCNGA	3 cut(s)	219, 1066, 1081
Hpy188III	TCNNGA	5 cut(s)	142, 191, 488, 571, 1127
Hpy8I	GTNNAC	4 cut(s)	680, 899, 1009, 1044
HpyAV	CCTTC	6 cut(s)	239, 269, 324, 338, 644, 814
HpyCH4III	ACNGT	6 cut(s)	230, 642, 817, 853, 1013, 1041
HpyCH4V	TGCA	3 cut(s)	261, 533, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	800, 955
HpyF3I	CTNAG	5 cut(s)	143, 468, 524, 689, 1080
Hsp92II	CATG	3 cut(s)	503, 722, 925
HspAI	GCGC	1 cut(s)	956
Ksp22I	TGATCA	2 cut(s)	187, 484
Kzo9I	GATC	8 cut(s)	187, 207, 362, 484, 519, 673, 978, 1023
LmnI	GCTCC	5 cut(s)	28, 104, 317, 347, 757
Lsp1109I	GCAGC	2 cut(s)	458, 836
LweI	GCATC	1 cut(s)	967
MaeIII	GTNAC	3 cut(s)	110, 964, 1030
MalI	GATC	8 cut(s)	189, 209, 364, 486, 521, 675, 980, 1025
MboI	GATC	8 cut(s)	187, 207, 362, 484, 519, 673, 978, 1023
MboII	GAAGA	3 cut(s)	206, 357, 1101
MflI	RGATCY	2 cut(s)	362, 519
MhlI	GDGCHC	2 cut(s)	224, 444
MlsI	TGGCCA	1 cut(s)	949
MluCI	AATT	3 cut(s)	398, 828, 1099
MluNI	TGGCCA	1 cut(s)	949
MlyI	GAGTC	2 cut(s)	307, 502
MmeI	TCCRAC	3 cut(s)	355, 485, 685
Mox20I	TGGCCA	1 cut(s)	949
MroXI	GAANNNNTTC	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	949
MseI	TTAA	1 cut(s)	95
MslI	CAYNNNNRTG	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	949
MspA1I	CMGCKG	1 cut(s)	449
MspCI	CTTAAG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	690
MwoI	GCNNNNNNNGC	2 cut(s)	800, 955
NcoI	CCATGG	1 cut(s)	718
NdeII	GATC	8 cut(s)	187, 207, 362, 484, 519, 673, 978, 1023
NlaIII	CATG	3 cut(s)	503, 722, 925
NlaIV	GGNNCC	3 cut(s)	724, 789, 1086
NmuCI	GTSAC	1 cut(s)	1030
NsbI	TGCGCA	1 cut(s)	957
NspV	TTCGAA	1 cut(s)	873
OliI	CACNNNNGTG	1 cut(s)	437
PctI	GAATGC	1 cut(s)	690
PdmI	GAANNNNTTC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	875
PkrI	GCNGC	2 cut(s)	448, 826
Ple19I	CGATCG	1 cut(s)	676
PleI	GAGTC	2 cut(s)	306, 502
PpsI	GAGTC	2 cut(s)	306, 502
PspFI	CCCAGC	1 cut(s)	932
PspN4I	GGNNCC	3 cut(s)	724, 789, 1086
PspPI	GGNCC	2 cut(s)	235, 918
PsrI	GAACNNNNNNTAC	2 cut(s)	827, 859
PsuI	RGATCY	2 cut(s)	362, 519
PvuI	CGATCG	1 cut(s)	676
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	3 cut(s)	232, 454, 679
RsaNI	GTAC	3 cut(s)	231, 453, 678
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	1 cut(s)	95
SatI	GCNGC	2 cut(s)	447, 825
Sau3AI	GATC	8 cut(s)	187, 207, 362, 484, 519, 673, 978, 1023
Sau96I	GGNCC	2 cut(s)	235, 918
SchI	GAGTC	2 cut(s)	307, 502
SduI	GDGCHC	2 cut(s)	224, 444
SfaNI	GCATC	1 cut(s)	967
SfcI	CTRYAG	1 cut(s)	621
SfuI	TTCGAA	1 cut(s)	873
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	3 cut(s)	94, 569, 1127
SmoI	CTYRAG	3 cut(s)	94, 569, 1127
Sse9I	AATT	3 cut(s)	398, 828, 1099
StyI	CCWWGG	1 cut(s)	718
TaaI	ACNGT	6 cut(s)	230, 642, 817, 853, 1013, 1041
TaqI	TCGA	5 cut(s)	672, 807, 873, 885, 987
TasI	AATT	3 cut(s)	398, 828, 1099
TfiI	GAWTC	1 cut(s)	875
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TscAI	CASTG	2 cut(s)	229, 647
TseFI	GTSAC	1 cut(s)	1030
TseI	GCWGC	2 cut(s)	446, 824
Tsp45I	GTSAC	1 cut(s)	1030
TspDTI	ATGAA	1 cut(s)	1071
TspGWI	ACGGA	2 cut(s)	169, 248
TspRI	CASTG	2 cut(s)	229, 647
Vha464I	CTTAAG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	2 cut(s)	398, 1099
XcmI	CCANNNNNNNNNTGG	1 cut(s)	774
XmnI	GAANNNNTTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.