Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002460.1

Orthogroup ID

OG0012834

Physical Location & Seq

Genomic Coordinates Forward (+)

143952 .. 147377

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002460.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atggcttccatccatgccatagctccccagagcttcccaaacgtcccaaaacccaatcccagaaaacccattacttcccacccaaaacccacctcaagctccaatctttacacccccaaactcccaaagacccagtctttccccttaaacaataggaaacccacttgggtcctcaactcggtggcccaacaccaagaatgtgacgtcatcccagttcagagctctgactgtgttgaccagcaggaagggatggtggtgagcagggtagagtgtgaaggtgtggagagcgagttggtgagtcaggtcggtgggtttggagcgagtgagggaaggctttcgtttgaaggggctggtgggtttgggtcttctggggttggaaatgagagagggaatgaggaattttacaggcttgtggataggagtattaatgccaccattgtgcttgcagctggtacttttgctattaccaagttgctcactattgatcaggattattggcatggatggactatatatgagattgtaagatatgcacctcaacacaactggactgcttatgaggaagctctcaaggctaatccagtgttagccaaaatggtaattagtggtgttgtatactctgtcggggactggattgcacagtgctttgaaggaaaacctttatttgagtttgaccgggcacgaatgttcagatctggacttgttggttttactctccatggttccctatcacactactattaccagttttgtgaggagctttttcctttccaagggtggtgggtggttcctgtcaaagtagtcttcgaccaaactatttgggcagcaatttggaacagcatttactttacagttttgggatttctgcgtcttgaatctcctatcaatatttatagtgaactgaaagcaacattctggcccatgctgactgcagggtggaagctttggccatttgctcatcttattacctatggtgtgatccccgttgaacaaaggctcttatgggtggactgtgtagagttaatttgggtgactatactctcaacttattccaatgaaaagtctgaagcaaggatttctgacgcaccagctgaagcaagttccagctctcctaacataagtcctcttgaggagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005779 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031231 GO:0031300 GO:0031301 GO:0031903 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

378

Amino Acids

42.42

Weight (kDa)

5.37

Isoelectric Point (pI)

44.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52870 AT1G52870
fragaria_vesca	FvH4_3g20720
malus_domestica	MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica	Prupe.4G187300_v2.0.a1
pyrus_communis	pycom03g17100 pycom11g21150
rosa_chinensis	RchiOBHm_Chr5g0034871
rosa_laevigata	RLG00000033582
rosa_multiflora	Rmu_sc0002460.1_g000037
rosa_roxburghii	Rroxscaffold_1G00045460
rosa_rugosa	Rorug05G0148900
rosa_samantha	Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana	Rw5G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	615
AclWI	GGATC	1 cut(s)	973
AcoI	YGGCCR	1 cut(s)	947
AcsI	RAATTY	1 cut(s)	398
AcuI	CTGAAG	2 cut(s)	1086, 1113
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	178, 773
AgsI	TTSAA	4 cut(s)	344, 650, 875, 989
AleI	CACNNNNGTG	1 cut(s)	437
Alw21I	GWGCWC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	973
AoxI	GGCC	3 cut(s)	183, 917, 947
ApeKI	GCWGC	2 cut(s)	446, 824
ApoI	RAATTY	1 cut(s)	398
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AseI	ATTAAT	1 cut(s)	426
Asp700I	GAANNNNTTC	1 cut(s)	334
AspS9I	GGNCC	3 cut(s)	169, 184, 918
AsuC2I	CCSGG	1 cut(s)	677
AsuHPI	GGTGA	3 cut(s)	268, 307, 1042
AvaII	GGWCC	1 cut(s)	169
BaeGI	GKGCMC	1 cut(s)	682
BalI	TGGCCA	1 cut(s)	949
BanII	GRGCYC	1 cut(s)	224
BbsI	GAAGAC	2 cut(s)	357, 796
Bbv12I	GWGCWC	1 cut(s)	224
BbvI	GCAGC	2 cut(s)	458, 836
BccI	CCATC	3 cut(s)	17, 244, 498
BclI	TGATCA	1 cut(s)	484
BcnI	CCSGG	1 cut(s)	677
BfmI	CTRYAG	1 cut(s)	930
BglII	AGATCT	1 cut(s)	692
BisI	GCNGC	2 cut(s)	447, 825
BlsI	GCNGC	2 cut(s)	448, 826
Bme1390I	CCNGG	1 cut(s)	677
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	3 cut(s)	169, 184, 918
BmiI	GGNNCC	3 cut(s)	170, 724, 789
BmrFI	CCNGG	1 cut(s)	677
BmrI	ACTGGG	2 cut(s)	127, 206
BmuI	ACTGGG	2 cut(s)	127, 206
BpiI	GAAGAC	2 cut(s)	357, 796
BpuEI	CTTGAG	2 cut(s)	79, 554
BpuMI	CCSGG	1 cut(s)	677
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	718, 772
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 773
Bse1I	ACTGG	6 cut(s)	133, 212, 551, 581, 635, 745
BseDI	CCNNGG	2 cut(s)	718, 772
BseGI	GGATG	4 cut(s)	9, 207, 255, 509
BseLI	CCNNNNNNNGG	2 cut(s)	178, 773
BseNI	ACTGG	6 cut(s)	133, 212, 551, 581, 635, 745
BseRI	GAGGAG	1 cut(s)	770
BseSI	GKGCMC	1 cut(s)	682
BseXI	GCAGC	2 cut(s)	458, 836
BshFI	GGCC	3 cut(s)	185, 919, 949
BsiHKAI	GWGCWC	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	676
BslFI	GGGAC	2 cut(s)	29, 641
BslI	CCNNNNNNNGG	2 cut(s)	178, 773
BsmFI	GGGAC	2 cut(s)	29, 641
BsnI	GGCC	3 cut(s)	185, 919, 949
Bsp1286I	GDGCHC	2 cut(s)	224, 682
Bsp143I	GATC	3 cut(s)	484, 692, 978
Bsp19I	CCATGG	1 cut(s)	718
BspANI	GGCC	3 cut(s)	185, 919, 949
BspLI	GGNNCC	3 cut(s)	170, 724, 789
BspMAI	CTGCAG	1 cut(s)	934
BspPI	GGATC	1 cut(s)	973
BsrI	ACTGG	6 cut(s)	133, 212, 551, 581, 635, 745
BssECI	CCNNGG	2 cut(s)	718, 772
BssMI	GATC	3 cut(s)	484, 692, 978
BssNAI	GTATAC	1 cut(s)	616
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	2 cut(s)	718, 772
Bst1107I	GTATAC	1 cut(s)	616
Bst4CI	ACNGT	4 cut(s)	230, 642, 853, 1013
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	444
BstDSI	CCRYGG	1 cut(s)	718
BstENI	CCTNNNNNAGG	1 cut(s)	771
BstF5I	GGATG	4 cut(s)	9, 207, 255, 509
BstKTI	GATC	3 cut(s)	487, 695, 981
BstMBI	GATC	3 cut(s)	484, 692, 978
BstMWI	GCNNNNNNNGC	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	930
BstSLI	GKGCMC	1 cut(s)	682
BstV1I	GCAGC	2 cut(s)	458, 836
BstV2I	GAAGAC	2 cut(s)	357, 796
BstX2I	RGATCY	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	692
BstZ17I	GTATAC	1 cut(s)	616
BsuRI	GGCC	3 cut(s)	185, 919, 949
BtgI	CCRYGG	1 cut(s)	718
BtsCI	GGATG	4 cut(s)	9, 207, 255, 509
BtsIMutI	CAGTG	2 cut(s)	588, 647
Cac8I	GCNNGC	1 cut(s)	444
Cfr13I	GGNCC	3 cut(s)	169, 184, 918
CseI	GACGC	2 cut(s)	857, 1091
Csp6I	GTAC	1 cut(s)	453
CspCI	CAANNNNNGTGG	2 cut(s)	761, 796
CviAII	CATG	4 cut(s)	14, 500, 719, 922
CviQI	GTAC	1 cut(s)	453
DpnI	GATC	3 cut(s)	486, 694, 980
DpnII	GATC	3 cut(s)	484, 692, 978
EaeI	YGGCCR	1 cut(s)	947
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	2 cut(s)	718, 772
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	1 cut(s)	222
Eco57I	CTGAAG	2 cut(s)	1086, 1113
EcoICRI	GAGCTC	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	771
EcoO109I	RGGNCCY	1 cut(s)	169
EcoT14I	CCWWGG	2 cut(s)	718, 772
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	2 cut(s)	718, 772
FaeI	CATG	4 cut(s)	17, 503, 722, 925
FaqI	GGGAC	2 cut(s)	29, 641
FatI	CATG	4 cut(s)	13, 499, 718, 921
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	2 cut(s)	447, 825
FokI	GGATG	3 cut(s)	194, 262, 516
FriOI	GRGCYC	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	447, 825
GluI	GCNGC	2 cut(s)	447, 825
HaeIII	GGCC	3 cut(s)	185, 919, 949
HapII	CCGG	1 cut(s)	676
HgaI	GACGC	2 cut(s)	857, 1091
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	4 cut(s)	17, 503, 722, 925
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	941
HinfI	GANTC	2 cut(s)	298, 875
HpaII	CCGG	1 cut(s)	676
HphI	GGTGA	3 cut(s)	268, 307, 1042
Hpy166II	GTNNAC	4 cut(s)	235, 616, 899, 1009
Hpy188I	TCNGA	5 cut(s)	219, 226, 692, 1066, 1081
Hpy188III	TCNNGA	4 cut(s)	488, 696, 872, 1127
Hpy8I	GTNNAC	4 cut(s)	235, 616, 899, 1009
HpyAV	CCTTC	5 cut(s)	239, 269, 324, 338, 644
HpyCH4III	ACNGT	4 cut(s)	230, 642, 853, 1013
HpyCH4IV	ACGT	2 cut(s)	42, 204
HpyCH4V	TGCA	4 cut(s)	446, 533, 638, 932
HpyF10VI	GCNNNNNNNGC	1 cut(s)	572
HpySE526I	ACGT	2 cut(s)	42, 204
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	17, 503, 722, 925
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	3 cut(s)	484, 692, 978
LmnI	GCTCC	4 cut(s)	28, 104, 317, 757
Lsp1109I	GCAGC	2 cut(s)	458, 836
MaeII	ACGT	2 cut(s)	42, 204
MaeIII	GTNAC	2 cut(s)	200, 1030
MalI	GATC	3 cut(s)	486, 694, 980
MboI	GATC	3 cut(s)	484, 692, 978
MboII	GAAGA	2 cut(s)	357, 796
MflI	RGATCY	1 cut(s)	692
MhlI	GDGCHC	2 cut(s)	224, 682
MlsI	TGGCCA	1 cut(s)	949
MluCI	AATT	4 cut(s)	398, 600, 828, 1023
MluNI	TGGCCA	1 cut(s)	949
MlyI	GAGTC	1 cut(s)	307
MmeI	TCCRAC	1 cut(s)	355
Mox20I	TGGCCA	1 cut(s)	949
MroXI	GAANNNNTTC	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	949
MseI	TTAA	3 cut(s)	146, 426, 1022
MslI	CAYNNNNRTG	1 cut(s)	437
Msp20I	TGGCCA	1 cut(s)	949
MspA1I	CMGCKG	2 cut(s)	449, 1091
MspI	CCGG	1 cut(s)	676
MspR9I	CCNGG	1 cut(s)	677
MwoI	GCNNNNNNNGC	1 cut(s)	572
NciI	CCSGG	1 cut(s)	677
NcoI	CCATGG	1 cut(s)	718
NdeII	GATC	3 cut(s)	484, 692, 978
NlaIII	CATG	4 cut(s)	17, 503, 722, 925
NlaIV	GGNNCC	3 cut(s)	170, 724, 789
NmuCI	GTSAC	2 cut(s)	200, 1030
OliI	CACNNNNGTG	1 cut(s)	437
PdmI	GAANNNNTTC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	875
PflFI	GACNNNGTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	448, 826
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
PpuMI	RGGWCCY	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	426
Psp124BI	GAGCTC	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	170, 724, 789
PspPI	GGNCC	3 cut(s)	169, 184, 918
PspPPI	RGGWCCY	1 cut(s)	169
PsrI	GAACNNNNNNTAC	2 cut(s)	827, 859
PstI	CTGCAG	1 cut(s)	934
PsuI	RGATCY	1 cut(s)	692
PsyI	GACNNNGTC	1 cut(s)	133
PvuII	CAGCTG	2 cut(s)	449, 1091
RsaI	GTAC	1 cut(s)	454
RsaNI	GTAC	1 cut(s)	453
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	1 cut(s)	224
SaqAI	TTAA	3 cut(s)	146, 426, 1022
SatI	GCNGC	2 cut(s)	447, 825
Sau3AI	GATC	3 cut(s)	484, 692, 978
Sau96I	GGNCC	3 cut(s)	169, 184, 918
SchI	GAGTC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	2 cut(s)	224, 682
SfcI	CTRYAG	1 cut(s)	930
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	3 cut(s)	94, 569, 1127
SmoI	CTYRAG	3 cut(s)	94, 569, 1127
Sse9I	AATT	4 cut(s)	398, 600, 828, 1023
SspI	AATATT	1 cut(s)	889
SstI	GAGCTC	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	675
StyI	CCWWGG	2 cut(s)	718, 772
TaaI	ACNGT	4 cut(s)	230, 642, 853, 1013
TaiI	ACGT	2 cut(s)	45, 207
TaqI	TCGA	1 cut(s)	807
TasI	AATT	4 cut(s)	398, 600, 828, 1023
TfiI	GAWTC	1 cut(s)	875
Tru1I	TTAA	3 cut(s)	146, 426, 1022
Tru9I	TTAA	3 cut(s)	146, 426, 1022
TscAI	CASTG	2 cut(s)	588, 647
TseFI	GTSAC	2 cut(s)	200, 1030
TseI	GCWGC	2 cut(s)	446, 824
Tsp45I	GTSAC	2 cut(s)	200, 1030
TspDTI	ATGAA	1 cut(s)	1071
TspRI	CASTG	2 cut(s)	588, 647
Tth111I	GACNNNGTC	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	169
VspI	ATTAAT	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	771
XapI	RAATTY	1 cut(s)	398
XmiI	GTMKAC	1 cut(s)	615
XmnI	GAANNNNTTC	1 cut(s)	334
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.