Rh5BG241400

Mpv17 / PMP22 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012834
Physical Location & Seq
Reverse (-)
29088475 .. 29092407
3933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG241400.1

Sequence Viewer

Length: 945 bp
ATGGCTTCCATCCACGCCATAGCTCCCCAGAGCTTCCCAAACGTCCCAAAACCCAATCCCAGAAAACCCATTACTTCCCACCCAAAACCCACCTCAAGCTCCAATCTTTACACCCCCAAACTCCCAAAGACCCAGTCTTTCCCCTTAAACAATAGGAAACCCACTTGGGTCCTCAACTCGGTGGCCCAACACCAAGAATGTGACGTCATCCCAGTTCAGAGCTCTGACTGTGTTGACCAGCAGGAAGGGATGGTGGTGAGCAGGGTAGAGTGTGAAGGTGTGGAGAGCGAGTTGGTGAGTCAGGTCGGTGGGTTTGGAGCGAGTGAGGGAAGGCTTTCGTTTGAAGGGGCTGGTGGGTTTGGGTCTTCTGGGGTTGGAAATGAGAGAGGGAATGAGGAATTTTACAGGCTTGTGGATAGGAGTATTAATGCCACCATTGTGCTTGCAGCTGGTACTTTTGCTATTACCAAGTTGCTCACTATTGATCAGGATTATTGGCATGGATGGACTATATATGAGATTGTAAGATATGCACCTCAACACAACTGGACTGCTTATGAGGAAGCTCTCAAGGCTAATCCAGTGTTAGCCAAAATGGTAATTAGTGGTGTTGTATACTCTGTCGGGGACTGGATTGCACAGTGCTTTGAAGGAAAACCTTTATTTGAGTTTGACCGGGCACGAATGTTCAGATCTGGACTTGTTGGTTTTACTCTCCATGGTTCCCTATCACACTACTATTACCAGTTTTGTGAGGAGCTTTTTCCTTTCCAAGGGTGGTGGGTGGTTCCTGTCAAAGTAGTCTTCGACCAAACTATTTGGGCAGCAATTTGGAACAGCATTTACTTTACAGTTTTGGGATTTCTGCGTCTTGAATCTCCTATCAATATTTATAGTGAACTGAAAGCAACATTCTGGCCCATGCTGACTGTAAGAGAACCTTGA

Protein Analysis

314

Amino Acids

35.3

Weight (kDa)

5.83

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012834)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52870 AT1G52870
fragaria_vesca FvH4_3g20720
malus_domestica MD03G1222400.v1.1 MD11G1239700.v1.1
prunus_persica Prupe.4G187300_v2.0.a1
pyrus_communis pycom03g17100 pycom11g21150
rosa_chinensis RchiOBHm_Chr5g0034871
rosa_laevigata RLG00000033582
rosa_multiflora Rmu_sc0002460.1_g000037
rosa_roxburghii Rroxscaffold_1G00045460
rosa_rugosa Rorug05G0148900
rosa_samantha Rh5AG241200 Rh5BG241400 Rh5CG272400 Rh5DG249900
rosa_wichuraiana Rw5G022050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 615
AcsI RAATTY 1 cut(s) 398
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 454
AfiI CCNNNNNNNGG 2 cut(s) 178, 773
AgsI TTSAA 3 cut(s) 344, 650, 875
AleI CACNNNNGTG 1 cut(s) 437
AluBI AGCT 7 cut(s) 23, 33, 99, 222, 449, 566, 760
AluI AGCT 7 cut(s) 23, 33, 99, 222, 449, 566, 760
Alw21I GWGCWC 1 cut(s) 224
AoxI GGCC 2 cut(s) 183, 917
ApeKI GCWGC 2 cut(s) 446, 824
ApoI RAATTY 1 cut(s) 398
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
AseI ATTAAT 1 cut(s) 426
Asp700I GAANNNNTTC 1 cut(s) 334
AspS9I GGNCC 3 cut(s) 169, 184, 918
AsuC2I CCSGG 1 cut(s) 677
AsuHPI GGTGA 2 cut(s) 268, 307
AvaII GGWCC 1 cut(s) 169
BaeGI GKGCMC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 224
BbsI GAAGAC 2 cut(s) 357, 796
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 458, 836
BccI CCATC 3 cut(s) 17, 244, 498
BclI TGATCA 1 cut(s) 484
BcnI CCSGG 1 cut(s) 677
BglII AGATCT 1 cut(s) 692
BisI GCNGC 2 cut(s) 447, 825
BlsI GCNGC 2 cut(s) 448, 826
Bme1390I CCNGG 1 cut(s) 677
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 3 cut(s) 169, 184, 918
BmiI GGNNCC 3 cut(s) 170, 724, 789
BmrFI CCNGG 1 cut(s) 677
BmrI ACTGGG 2 cut(s) 127, 206
BmuI ACTGGG 2 cut(s) 127, 206
BpiI GAAGAC 2 cut(s) 357, 796
BpuEI CTTGAG 2 cut(s) 79, 554
BpuMI CCSGG 1 cut(s) 677
BsaHI GRCGYC 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 718, 772
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 178, 773
Bse1I ACTGG 6 cut(s) 133, 212, 551, 581, 635, 745
BseDI CCNNGG 2 cut(s) 718, 772
BseGI GGATG 4 cut(s) 9, 207, 255, 509
BseLI CCNNNNNNNGG 2 cut(s) 178, 773
BseNI ACTGG 6 cut(s) 133, 212, 551, 581, 635, 745
BseRI GAGGAG 1 cut(s) 770
BseSI GKGCMC 1 cut(s) 682
BseXI GCAGC 2 cut(s) 458, 836
BshFI GGCC 2 cut(s) 185, 919
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 676
BslFI GGGAC 2 cut(s) 29, 641
BslI CCNNNNNNNGG 2 cut(s) 178, 773
BsmFI GGGAC 2 cut(s) 29, 641
BsnI GGCC 2 cut(s) 185, 919
Bsp1286I GDGCHC 2 cut(s) 224, 682
Bsp143I GATC 2 cut(s) 484, 692
Bsp19I CCATGG 1 cut(s) 718
BspANI GGCC 2 cut(s) 185, 919
BspLI GGNNCC 3 cut(s) 170, 724, 789
BsrI ACTGG 6 cut(s) 133, 212, 551, 581, 635, 745
BssECI CCNNGG 2 cut(s) 718, 772
BssMI GATC 2 cut(s) 484, 692
BssNAI GTATAC 1 cut(s) 616
BssNI GRCGYC 1 cut(s) 204
BssT1I CCWWGG 2 cut(s) 718, 772
Bst1107I GTATAC 1 cut(s) 616
Bst4CI ACNGT 4 cut(s) 230, 642, 853, 931
BstACI GRCGYC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 444
BstDSI CCRYGG 1 cut(s) 718
BstENI CCTNNNNNAGG 1 cut(s) 771
BstF5I GGATG 4 cut(s) 9, 207, 255, 509
BstKTI GATC 2 cut(s) 487, 695
BstMBI GATC 2 cut(s) 484, 692
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstSCI CCNGG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 682
BstV1I GCAGC 2 cut(s) 458, 836
BstV2I GAAGAC 2 cut(s) 357, 796
BstX2I RGATCY 1 cut(s) 692
BstYI RGATCY 1 cut(s) 692
BstZ17I GTATAC 1 cut(s) 616
BsuRI GGCC 2 cut(s) 185, 919
BtgI CCRYGG 1 cut(s) 718
BtsCI GGATG 4 cut(s) 9, 207, 255, 509
BtsIMutI CAGTG 2 cut(s) 588, 647
Cac8I GCNNGC 1 cut(s) 444
Cfr13I GGNCC 3 cut(s) 169, 184, 918
CseI GACGC 1 cut(s) 857
Csp6I GTAC 1 cut(s) 453
CspCI CAANNNNNGTGG 2 cut(s) 761, 796
CviAII CATG 3 cut(s) 500, 719, 922
CviQI GTAC 1 cut(s) 453
DpnI GATC 2 cut(s) 486, 694
DpnII GATC 2 cut(s) 484, 692
Ecl136II GAGCTC 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 718, 772
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 222
EcoICRI GAGCTC 1 cut(s) 222
EcoNI CCTNNNNNAGG 1 cut(s) 771
EcoO109I RGGNCCY 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 718, 772
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 2 cut(s) 718, 772
FaeI CATG 3 cut(s) 503, 722, 925
FalI AAGNNNNNCTT 1 cut(s) 925
FaqI GGGAC 2 cut(s) 29, 641
FatI CATG 3 cut(s) 499, 718, 921
FbaI TGATCA 1 cut(s) 484
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 2 cut(s) 447, 825
FokI GGATG 3 cut(s) 194, 262, 516
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 447, 825
GluI GCNGC 2 cut(s) 447, 825
HaeIII GGCC 2 cut(s) 185, 919
HapII CCGG 1 cut(s) 676
HgaI GACGC 1 cut(s) 857
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 3 cut(s) 503, 722, 925
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 2 cut(s) 298, 875
HpaII CCGG 1 cut(s) 676
HphI GGTGA 2 cut(s) 268, 307
Hpy166II GTNNAC 3 cut(s) 235, 616, 899
Hpy188I TCNGA 3 cut(s) 219, 226, 692
Hpy188III TCNNGA 3 cut(s) 488, 696, 872
Hpy8I GTNNAC 3 cut(s) 235, 616, 899
HpyAV CCTTC 5 cut(s) 239, 269, 324, 338, 644
HpyCH4III ACNGT 4 cut(s) 230, 642, 853, 931
HpyCH4IV ACGT 2 cut(s) 42, 204
HpyCH4V TGCA 3 cut(s) 446, 533, 638
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpySE526I ACGT 2 cut(s) 42, 204
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 3 cut(s) 503, 722, 925
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 2 cut(s) 484, 692
LmnI GCTCC 4 cut(s) 28, 104, 317, 757
Lsp1109I GCAGC 2 cut(s) 458, 836
MaeII ACGT 2 cut(s) 42, 204
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 486, 694
MboI GATC 2 cut(s) 484, 692
MboII GAAGA 2 cut(s) 357, 796
MflI RGATCY 1 cut(s) 692
MhlI GDGCHC 2 cut(s) 224, 682
MluCI AATT 3 cut(s) 398, 600, 828
MlyI GAGTC 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 8 cut(s) 103, 182, 319, 380, 388, 546, 553, 748
MroXI GAANNNNTTC 1 cut(s) 334
MseI TTAA 2 cut(s) 146, 426
MslI CAYNNNNRTG 1 cut(s) 437
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 1 cut(s) 676
MspR9I CCNGG 1 cut(s) 677
MwoI GCNNNNNNNGC 1 cut(s) 572
NciI CCSGG 1 cut(s) 677
NcoI CCATGG 1 cut(s) 718
NdeII GATC 2 cut(s) 484, 692
NlaIII CATG 3 cut(s) 503, 722, 925
NlaIV GGNNCC 3 cut(s) 170, 724, 789
NmuCI GTSAC 1 cut(s) 200
OliI CACNNNNGTG 1 cut(s) 437
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 1 cut(s) 875
PflFI GACNNNGTC 1 cut(s) 133
PkrI GCNGC 2 cut(s) 448, 826
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
PpuMI RGGWCCY 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 426
Psp124BI GAGCTC 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 170, 724, 789
PspPI GGNCC 3 cut(s) 169, 184, 918
PspPPI RGGWCCY 1 cut(s) 169
PsrI GAACNNNNNNTAC 2 cut(s) 827, 859
PsuI RGATCY 1 cut(s) 692
PsyI GACNNNGTC 1 cut(s) 133
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
RseI CAYNNNNRTG 1 cut(s) 437
SacI GAGCTC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 146, 426
SatI GCNGC 2 cut(s) 447, 825
Sau3AI GATC 2 cut(s) 484, 692
Sau96I GGNCC 3 cut(s) 169, 184, 918
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 1 cut(s) 677
SduI GDGCHC 2 cut(s) 224, 682
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 94, 569
SmoI CTYRAG 2 cut(s) 94, 569
Sse9I AATT 3 cut(s) 398, 600, 828
SspI AATATT 1 cut(s) 889
SstI GAGCTC 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 675
StyI CCWWGG 2 cut(s) 718, 772
TaaI ACNGT 4 cut(s) 230, 642, 853, 931
TaiI ACGT 2 cut(s) 45, 207
TaqI TCGA 1 cut(s) 807
TasI AATT 3 cut(s) 398, 600, 828
TfiI GAWTC 1 cut(s) 875
Tru1I TTAA 2 cut(s) 146, 426
Tru9I TTAA 2 cut(s) 146, 426
TscAI CASTG 2 cut(s) 588, 647
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 446, 824
Tsp45I GTSAC 1 cut(s) 200
TspRI CASTG 2 cut(s) 588, 647
Tth111I GACNNNGTC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 169
VspI ATTAAT 1 cut(s) 426
XagI CCTNNNNNAGG 1 cut(s) 771
XapI RAATTY 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 615
XmnI GAANNNNTTC 1 cut(s) 334
ZraI GACGTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.