Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004482

Physical Location & Seq

Genomic Coordinates Reverse (-)

19912990 .. 19916686

Gene Structure 3697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGAGACTGTGAGACCAATGGTTGTTGCTCCTAAGGGTAACAAACTCAGACGCAAGTTTGCTAAAGTTCTTAACATTCATAAGCTAACGGGTGTTGCTCCAGAAGGAGAAATGAAGAAGATAAAGTTCGATTCCAAAACCGCTAAGTTGTCTGAGTCGTTCTACAAGCTTGAGGAAGAGTATGAGAGAAGTCAGGGATTGGAAGCTCTTCTTGCGAAGCTTTTTGCTACGGTTTCTTCGATCAAAGCGGCTTATGCGCAGTTACAGCATTCTCAGTCTCCGTATGACTCTATCGGGATTCAAAAAGCAGATAACTTGGTAGTCGCCGAGCTTAAGACTTTGTCTGAGCTGAAACAATGTTTCATGAAGAAACAAGTGGATCCAAATCCCGAAAGAACTCTGGTTCTCGCGGAGATTCAAGAGCTGAGGAGTCTATTGAAAACGTATGAGATAATGGGGAAGAAGCTGGAGTCTCAGTACAAGCTTAAAGACTCAGAGATTATATTTCTGAGAGAGAAACTTGATGAATCGATGAAACAGAACAAGTTGACAGAGAAGAGACTTAACCAAAGCGGACAACTTTGCAATCCACTTGACAATCTTCACCTATCTGCGCTAAATCCAACACATTTCGTTACTTATCTGCACCACACAGTCAAGTCCACCAGAGGTTTCGTCAAGCTAATGATCGAACAAATGAAACTCGCTGGATGGGATATTTCATCAGCTGCTAATTCGATCCATCCCGGTGTGTTCTACTACAAGCAAGACCACAAGTGTTTCACTTTCGAACACTTTGTCTCCAATGTGATGTTCGAAGCGTTTCATCTACCGTACTTCTCAACTTCAAGCGAGTCAAGAAGCTACAAGAAGAAGAAACAGAGCAATGCAGATAGAGAAATGTTCTTTGAAAGGTTTAAAGAACTCAGGTCGATGAAAGCGAAAGATTATCTAACCGCGAGGCCTAAATCAAGATTCGCTAGGTTCTGTCGAGCCAAGTACTTGCAGCTTATACATCCAAAGATGGAGCAAGCTTTCTTCGGACATTTGCATTTGAGAAACCAAGTTTCTGCTGGTGAATTCCCGGAGACGAGCTTATTCTCTGGATTTCTTGAAATGGCGAAACGAATTTGGCTTTTGCATTGCTTGGCTCTCTCTTTTGAACGTGAAGCTGAGATCTTTCGAGTACCTAAAGGTTGTAGATTCTCTGAAGTGTATATGAAGAGTGTAGCAGAAGAAGCGTTTTTCCCGGCGGCGGAGAGTTCGCCGGAGTCTGAGCCACGTGTCGCGTTCACGGTTGTTCCAGGGTTTAGAATTGGGAAGACTTCAATACAATGCGAGGTCTATCTCTCGCTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

453

Amino Acids

52.28

Weight (kDa)

9.39

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF641	PF04859	63 - 187	3.1e-45	Plant protein of unknown function (DUF641)
GIL1_IRKI_C	PF24994	393 - 449	6e-21	GIL1/IRKI C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53380 AT1G53380 AT1G53380 AT1G53380 AT1G53380 AT3G14870 AT3G14870 AT3G14870 AT3G14870 AT3G14870
fragaria_vesca	FvH4_3g18160 FvH4_3g18160
malus_domestica	MD03G1276500.v1.1 MD11G1265400.v1.1
prunus_persica	Prupe.4G160500_v2.0.a1 Prupe.4G160500_v2.0.a1 Prupe.4G160500_v2.0.a1
pyrus_communis	pycom03g19360 pycom11g23340
rosa_chinensis	RchiOBHm_Chr5g0030591
rosa_laevigata	RLG00000033232
rosa_multiflora	Rmu_sc0003238.1_g000005
rosa_roxburghii	Rroxscaffold_1G00049700
rosa_rugosa	Rorug05G0118600 Rorug05G0118700 Rorug05G0118800 Rorug05G0118900
rosa_samantha	Rh5AG211000 Rh5BG210000 Rh5CG233700 Rh5DG214700
rosa_wichuraiana	Rw5G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	258
AccII	CGCG	3 cut(s)	410, 959, 1289
AciI	CCGC	7 cut(s)	141, 248, 410, 573, 957, 1253, 1256
AclWI	GGATC	3 cut(s)	374, 387, 733
AcsI	RAATTY	2 cut(s)	1079, 1128
AcuI	CTGAAG	1 cut(s)	1230
AcvI	CACGTG	1 cut(s)	1283
AfaI	GTAC	4 cut(s)	479, 836, 1001, 1188
AfiI	CCNNNNNNNGG	1 cut(s)	1255
AflII	CTTAAG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	1282
AgsI	TTSAA	8 cut(s)	302, 419, 439, 849, 911, 1115, 1163, 1329
AjnI	CCWGG	1 cut(s)	1303
AjuI	GAANNNNNNNTTGG	2 cut(s)	797, 829
Alw26I	GTCTC	6 cut(s)	7, 282, 477, 553, 805, 1082
AlwI	GGATC	3 cut(s)	374, 387, 733
AoxI	GGCC	1 cut(s)	962
ApeKI	GCWGC	2 cut(s)	728, 1006
ApoI	RAATTY	2 cut(s)	1079, 1128
ArsI	GACNNNNNNTTYG	2 cut(s)	783, 815
Asp700I	GAANNNNTTC	2 cut(s)	207, 822
AspLEI	GCGC	2 cut(s)	259, 616
AsuC2I	CCSGG	3 cut(s)	747, 1085, 1250
AsuHPI	GGTGA	2 cut(s)	596, 1088
AsuII	TTCGAA	2 cut(s)	789, 816
AxyI	CCTNAGG	1 cut(s)	33
BamHI	GGATCC	1 cut(s)	379
BbrPI	CACGTG	1 cut(s)	1283
BbsI	GAAGAC	1 cut(s)	1328
BbvCI	CCTCAGC	1 cut(s)	425
BbvI	GCAGC	2 cut(s)	715, 1018
BccI	CCATC	3 cut(s)	705, 750, 1018
BciT130I	CCWGG	1 cut(s)	1305
BcnI	CCSGG	3 cut(s)	747, 1085, 1250
BcoDI	GTCTC	6 cut(s)	7, 282, 477, 553, 805, 1082
BfaI	CTAG	1 cut(s)	981
BfrI	CTTAAG	1 cut(s)	332
BglII	AGATCT	1 cut(s)	1176
BisI	GCNGC	4 cut(s)	249, 729, 1007, 1254
BlsI	GCNGC	4 cut(s)	250, 730, 1008, 1255
BmcAI	AGTACT	1 cut(s)	1001
Bme1390I	CCNGG	4 cut(s)	747, 1085, 1250, 1305
BmiI	GGNNCC	1 cut(s)	381
BmrFI	CCNGG	4 cut(s)	747, 1085, 1250, 1305
BpiI	GAAGAC	1 cut(s)	1328
BpmI	CTGGAG	2 cut(s)	84, 488
Bpu10I	CCTNAGC	1 cut(s)	425
Bpu14I	TTCGAA	2 cut(s)	789, 816
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	3 cut(s)	747, 1085, 1250
Bsa29I	ATCGAT	1 cut(s)	530
BsaAI	YACGTR	1 cut(s)	1283
BsaBI	GATNNNNATC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	1 cut(s)	1304
BsaXI	ACNNNNNCTCC	4 cut(s)	461, 491, 785, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	1255
Bse21I	CCTNAGG	1 cut(s)	33
Bse3DI	GCAATG	2 cut(s)	892, 1141
Bse8I	GATNNNNATC	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	1305
BseCI	ATCGAT	1 cut(s)	530
BseDI	CCNNGG	1 cut(s)	1304
BseGI	GGATG	3 cut(s)	716, 742, 1015
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	1255
BseMI	GCAATG	2 cut(s)	892, 1141
BseRI	GAGGAG	1 cut(s)	442
BseXI	GCAGC	2 cut(s)	715, 1018
BsgI	GTGCAG	1 cut(s)	629
Bsh1236I	CGCG	3 cut(s)	410, 959, 1289
BshFI	GGCC	1 cut(s)	964
BshVI	ATCGAT	1 cut(s)	530
BsiSI	CCGG	4 cut(s)	747, 1085, 1250, 1268
BslI	CCNNNNNNNGG	1 cut(s)	1255
BsmAI	GTCTC	6 cut(s)	7, 282, 477, 553, 805, 1082
BsmBI	CGTCTC	1 cut(s)	1082
BsmI	GAATGC	1 cut(s)	268
BsnI	GGCC	1 cut(s)	964
Bso31I	GGTCTC	1 cut(s)	7
Bsp119I	TTCGAA	2 cut(s)	789, 816
Bsp143I	GATC	5 cut(s)	240, 379, 687, 738, 1176
BspACI	CCGC	7 cut(s)	141, 248, 410, 573, 957, 1253, 1256
BspANI	GGCC	1 cut(s)	964
BspDI	ATCGAT	1 cut(s)	530
BspFNI	CGCG	3 cut(s)	410, 959, 1289
BspHI	TCATGA	2 cut(s)	363, 1358
BspLI	GGNNCC	1 cut(s)	381
BspPI	GGATC	3 cut(s)	374, 387, 733
BspQI	GCTCTTC	1 cut(s)	213
BspT104I	TTCGAA	2 cut(s)	789, 816
BspTI	CTTAAG	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	7
BsrDI	GCAATG	2 cut(s)	892, 1141
BssECI	CCNNGG	1 cut(s)	1304
BssMI	GATC	5 cut(s)	240, 379, 687, 738, 1176
Bst2UI	CCWGG	1 cut(s)	1305
Bst4CI	ACNGT	5 cut(s)	10, 232, 655, 834, 1297
Bst6I	CTCTTC	4 cut(s)	171, 213, 551, 1217
BstAFI	CTTAAG	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	1283
BstBI	TTCGAA	2 cut(s)	789, 816
BstC8I	GCNNGC	1 cut(s)	1032
BstF5I	GGATG	3 cut(s)	716, 742, 1015
BstFNI	CGCG	3 cut(s)	410, 959, 1289
BstHHI	GCGC	2 cut(s)	259, 616
BstKTI	GATC	5 cut(s)	243, 382, 690, 741, 1179
BstMAI	GTCTC	6 cut(s)	7, 282, 477, 553, 805, 1082
BstMBI	GATC	5 cut(s)	240, 379, 687, 738, 1176
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 254, 265, 1238
BstNI	CCWGG	1 cut(s)	1305
BstSCI	CCNGG	4 cut(s)	745, 1083, 1248, 1303
BstUI	CGCG	3 cut(s)	410, 959, 1289
BstV1I	GCAGC	2 cut(s)	715, 1018
BstV2I	GAAGAC	1 cut(s)	1328
BstX2I	RGATCY	2 cut(s)	379, 1176
BstYI	RGATCY	2 cut(s)	379, 1176
Bsu15I	ATCGAT	1 cut(s)	530
Bsu36I	CCTNAGG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	964
BsuTUI	ATCGAT	1 cut(s)	530
BtsCI	GGATG	3 cut(s)	716, 742, 1015
Cac8I	GCNNGC	1 cut(s)	1032
CciI	TCATGA	2 cut(s)	363, 1358
CfoI	GCGC	2 cut(s)	259, 616
ClaI	ATCGAT	1 cut(s)	530
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	4 cut(s)	478, 835, 1000, 1187
CviAII	CATG	2 cut(s)	364, 1359
CviQI	GTAC	4 cut(s)	478, 835, 1000, 1187
DpnI	GATC	5 cut(s)	242, 381, 689, 740, 1178
DpnII	GATC	5 cut(s)	240, 379, 687, 738, 1176
DraI	TTTAAA	1 cut(s)	919
Eam1104I	CTCTTC	4 cut(s)	171, 213, 551, 1217
EarI	CTCTTC	4 cut(s)	171, 213, 551, 1217
EciI	GGCGGA	1 cut(s)	1271
Eco147I	AGGCCT	1 cut(s)	964
Eco31I	GGTCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	1230
Eco72I	CACGTG	1 cut(s)	1283
Eco81I	CCTNAGG	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	1079
EcoRII	CCWGG	1 cut(s)	1303
Esp3I	CGTCTC	1 cut(s)	1082
FaeI	CATG	2 cut(s)	367, 1362
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FatI	CATG	2 cut(s)	363, 1358
Fnu4HI	GCNGC	4 cut(s)	249, 729, 1007, 1254
FokI	GGATG	3 cut(s)	723, 729, 1002
Fsp4HI	GCNGC	4 cut(s)	249, 729, 1007, 1254
FspBI	CTAG	1 cut(s)	981
FspI	TGCGCA	1 cut(s)	258
GlaI	GCGC	2 cut(s)	258, 615
GluI	GCNGC	4 cut(s)	249, 729, 1007, 1254
GsuI	CTGGAG	2 cut(s)	84, 488
HaeIII	GGCC	1 cut(s)	964
HapII	CCGG	4 cut(s)	747, 1085, 1250, 1268
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	2 cut(s)	259, 616
Hin1II	CATG	2 cut(s)	367, 1362
Hin6I	GCGC	2 cut(s)	257, 614
HinP1I	GCGC	2 cut(s)	257, 614
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HindIII	AAGCTT	4 cut(s)	167, 218, 482, 1032
HpaII	CCGG	4 cut(s)	747, 1085, 1250, 1268
HphI	GGTGA	2 cut(s)	596, 1088
Hpy166II	GTNNAC	3 cut(s)	549, 663, 1293
Hpy188I	TCNGA	8 cut(s)	50, 154, 346, 496, 510, 1043, 1210, 1276
Hpy8I	GTNNAC	3 cut(s)	549, 663, 1293
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	5 cut(s)	10, 232, 655, 834, 1297
HpyCH4IV	ACGT	3 cut(s)	443, 1165, 1282
HpyCH4V	TGCA	6 cut(s)	585, 646, 890, 1006, 1051, 1141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 254, 265, 1238
HpySE526I	ACGT	3 cut(s)	443, 1165, 1282
Hsp92II	CATG	2 cut(s)	367, 1362
HspAI	GCGC	2 cut(s)	257, 614
Kzo9I	GATC	5 cut(s)	240, 379, 687, 738, 1176
LguI	GCTCTTC	1 cut(s)	213
LmnI	GCTCC	3 cut(s)	34, 103, 1027
Lsp1109I	GCAGC	2 cut(s)	715, 1018
MaeI	CTAG	1 cut(s)	981
MaeII	ACGT	3 cut(s)	443, 1165, 1282
MaeIII	GTNAC	3 cut(s)	38, 261, 634
MalI	GATC	5 cut(s)	242, 381, 689, 740, 1178
MboI	GATC	5 cut(s)	240, 379, 687, 738, 1176
MflI	RGATCY	2 cut(s)	379, 1176
MluCI	AATT	4 cut(s)	733, 1079, 1128, 1314
MlyI	GAGTC	7 cut(s)	164, 281, 439, 479, 485, 863, 1280
MmeI	TCCRAC	1 cut(s)	647
MnlI	CCTC	5 cut(s)	166, 420, 662, 954, 1333
MroXI	GAANNNNTTC	2 cut(s)	207, 822
MseI	TTAA	5 cut(s)	72, 333, 486, 564, 918
MslI	CAYNNNNRTG	1 cut(s)	747
MspA1I	CMGCKG	1 cut(s)	728
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	4 cut(s)	747, 1085, 1250, 1268
MspR9I	CCNGG	4 cut(s)	747, 1085, 1250, 1305
Mva1269I	GAATGC	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	1305
MvnI	CGCG	3 cut(s)	410, 959, 1289
MwoI	GCNNNNNNNGC	4 cut(s)	212, 254, 265, 1238
NciI	CCSGG	3 cut(s)	747, 1085, 1250
NdeII	GATC	5 cut(s)	240, 379, 687, 738, 1176
NlaIII	CATG	2 cut(s)	367, 1362
NlaIV	GGNNCC	1 cut(s)	381
NmeAIII	GCCGAG	1 cut(s)	352
NsbI	TGCGCA	1 cut(s)	258
NspV	TTCGAA	2 cut(s)	789, 816
PagI	TCATGA	2 cut(s)	363, 1358
PceI	AGGCCT	1 cut(s)	964
PciSI	GCTCTTC	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	2 cut(s)	236, 938
PctI	GAATGC	1 cut(s)	268
PdmI	GAANNNNTTC	2 cut(s)	207, 822
PfeI	GAWTC	6 cut(s)	131, 298, 415, 527, 975, 1203
PflFI	GACNNNGTC	1 cut(s)	340
PfoI	TCCNGGA	1 cut(s)	1083
PkrI	GCNGC	4 cut(s)	250, 730, 1008, 1255
PleI	GAGTC	7 cut(s)	163, 281, 438, 478, 485, 862, 1279
PmaCI	CACGTG	1 cut(s)	1283
PmlI	CACGTG	1 cut(s)	1283
PpsI	GAGTC	7 cut(s)	163, 281, 438, 478, 485, 862, 1279
Ppu21I	YACGTR	1 cut(s)	1283
Psp6I	CCWGG	1 cut(s)	1303
PspCI	CACGTG	1 cut(s)	1283
PspGI	CCWGG	1 cut(s)	1303
PspN4I	GGNNCC	1 cut(s)	381
PsuI	RGATCY	2 cut(s)	379, 1176
PsyI	GACNNNGTC	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	4 cut(s)	479, 836, 1001, 1188
RsaNI	GTAC	4 cut(s)	478, 835, 1000, 1187
RseI	CAYNNNNRTG	1 cut(s)	747
SapI	GCTCTTC	1 cut(s)	213
SaqAI	TTAA	5 cut(s)	72, 333, 486, 564, 918
SatI	GCNGC	4 cut(s)	249, 729, 1007, 1254
Sau3AI	GATC	5 cut(s)	240, 379, 687, 738, 1176
ScaI	AGTACT	1 cut(s)	1001
SchI	GAGTC	7 cut(s)	164, 281, 439, 479, 485, 863, 1280
ScrFI	CCNGG	4 cut(s)	747, 1085, 1250, 1305
SfuI	TTCGAA	2 cut(s)	789, 816
SmiMI	CAYNNNNRTG	1 cut(s)	747
SmlI	CTYRAG	2 cut(s)	170, 332
SmoI	CTYRAG	2 cut(s)	170, 332
Sse9I	AATT	4 cut(s)	733, 1079, 1128, 1314
SseBI	AGGCCT	1 cut(s)	964
SsiI	CCGC	7 cut(s)	141, 248, 410, 573, 957, 1253, 1256
SspMI	CTAG	1 cut(s)	981
StuI	AGGCCT	1 cut(s)	964
StyD4I	CCNGG	4 cut(s)	745, 1083, 1248, 1303
TaaI	ACNGT	5 cut(s)	10, 232, 655, 834, 1297
TaiI	ACGT	3 cut(s)	446, 1168, 1285
TasI	AATT	4 cut(s)	733, 1079, 1128, 1314
TatI	WGTACW	2 cut(s)	477, 999
TauI	GCSGC	2 cut(s)	251, 1256
TfiI	GAWTC	6 cut(s)	131, 298, 415, 527, 975, 1203
Tru1I	TTAA	5 cut(s)	72, 333, 486, 564, 918
Tru9I	TTAA	5 cut(s)	72, 333, 486, 564, 918
TseI	GCWGC	2 cut(s)	728, 1006
TspGWI	ACGGA	1 cut(s)	270
Tth111I	GACNNNGTC	1 cut(s)	340
Vha464I	CTTAAG	1 cut(s)	332
XapI	RAATTY	2 cut(s)	1079, 1128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1070
XmnI	GAANNNNTTC	2 cut(s)	207, 822
XspI	CTAG	1 cut(s)	981
ZrmI	AGTACT	1 cut(s)	1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.