FvH4_3g18160

Plant protein of unknown function (DUF641)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
11581523 .. 11586565
5043 bp
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UTR
Exon/CDS
Intron
FvH4_3g18160.t2

Sequence Viewer

Length: 1548 bp
ATGGATTCAGTGAGTCGGTCAGCTGTAACTCCAACTAAGAGTAGGTTGGCACGTACTATTGCAAAAGTTCTTCATCTTCGTGCTGCAACAGGTATTGCCCCGGTTGATGGGATTCAGAAAGGTAACTCCCAAGAATTTCAGAAGGGTAGCTACCAAGAAATTGGGGTTCAGAAATCCAAGTCCCATGAAATCGGGGTTCAGAAAGCCAGGTCCCAAGAAATTGGGATTCAGAAAGTCAAGTCCAAAGAAAATGAAAATCAGAAATTCAAGTCGCAAGAAATTGGAATTCAGAAAGTCCAGGATGGTTGGAATGCTCCTAAGGTTAGGGTTACTTTGTCTCAATCATTTGAGAAGAACAACGACAAGCTACAGGAAAGAGCAGCCTTGGAAGCTCTTCTTGCAAAGCTGTTTGCCAGCATTTCATCTGTTAAAGCTGCTTATGCTGAGCTACAATATGCTCAGACTCCATACGATGCCGAAGGAATTCGTGCTGCTGATCACACAGTAGTTGACGAGTTGAAGAAATTGTCCGAGTTGAAGAGGTGTTTCCTAAATAAGCAGTTTGATCCTTCGCCGGAGACTACTGTAGTGTTGGCTGAGATTGAGGAACAGAAGAGTGTTCTCAAGACCTATGAGATTATGGGGAAGAAGTTGGAATCTCAGGTGAGGCTCAAGGACTCTGAAGTAATATTTCTTGGTGAGAAGTTGGAGGAAGCCAATAAACAGAACAAGTTGCTTGAAAAGAGAGTATACCAGAGTGGGCAGATATATGTGCCTGACAATATTCATTTATCTGGTTTAAGTCCTAGCCATTTCATTACAGTTCTACGGCCCACAGTCAAGTCCATTCGGAGCTTTGTCAGGACAATGATGGATGAAATGAAATCTGCTGGTTGGGACATTCATGCAGCAGCTCATTCAATTGATGGTGGTGAAGTTGCTTATTGGAAAGAAGACCACAAATGTTTTGCATTTGAACATTTTGTTTGCAGGGAAATGTTTGATGCTTTCCAATACCCCAACTTCTCACTTCCAAATGAGTTCTTGCCGGATAAAAAGAAACAGCAGCAGCAACTCTTTTTTGAGAGATTCACGGAACTCAAACCTTGGAAGGCAAAGGAATATCTTTTCCGAAATCCAAAATCAGCATTTGCCAAATTCTGTCGCGTCAAGTACTTACGGCTGATTCATCCCAAGATGGAAACATCATTTTCCGGCAATCTGAATCAAAGAAACCTTGTGAGTGACGGTGAGTTTCCAAACACTAATTTCTTTTCTATATTTGCGGACATGGCGAAACGGGTCTGGCTCCTGCATTTGCTGGCCTTCTCCTTCAATCCCGAAGCTGCAATCTTCCAAGTGAGCAAAGGGTGTCGGTTTTCAGAAGTCTACATGGAAAGTGTGGCGGAGGAAGCCTTCCAATCAACGGCATCAGAACCACTAGTGGGATTCACAGTTGTTCCGGGATTCAGACTCGGTAAAACAGTCATTCAATGCCAAGTTTACCTCACCTCTCAGTTACAGTCCAATCGAATAAAACAAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

516

Amino Acids

58.75

Weight (kDa)

9.24

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 125 - 249 8.6e-46 Plant protein of unknown function (DUF641)
GIL1_IRKI_C PF24994 451 - 502 7.5e-25 GIL1/IRKI C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 750, 1389
AccII CGCG 1 cut(s) 1167
AciI CCGC 2 cut(s) 1286, 1406
AclWI GGATC 1 cut(s) 560
AcsI RAATTY 5 cut(s) 134, 263, 285, 483, 1157
AcuI CTGAAG 1 cut(s) 702
AfaI GTAC 2 cut(s) 55, 1175
AfiI CCNNNNNNNGG 3 cut(s) 107, 1426, 1445
AgsI TTSAA 8 cut(s) 268, 520, 538, 740, 921, 977, 1336, 1493
AhlI ACTAGT 1 cut(s) 1441
AjnI CCWGG 2 cut(s) 206, 297
Alw26I GTCTC 2 cut(s) 342, 572
AlwI GGATC 1 cut(s) 560
AoxI GGCC 2 cut(s) 830, 1323
ApeKI GCWGC 9 cut(s) 83, 380, 434, 491, 908, 911, 1066, 1069, 1346
ApoI RAATTY 5 cut(s) 134, 263, 285, 483, 1157
Asp700I GAANNNNTTC 2 cut(s) 393, 483
AspS9I GGNCC 2 cut(s) 210, 831
AsuC2I CCSGG 2 cut(s) 101, 1464
AsuHPI GGTGA 5 cut(s) 676, 710, 944, 1262, 1501
AvaII GGWCC 1 cut(s) 210
AxyI CCTNAGG 1 cut(s) 318
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BbsI GAAGAC 1 cut(s) 960
BbvI GCAGC 9 cut(s) 70, 392, 421, 478, 920, 923, 1078, 1081, 1333
BccI CCATC 5 cut(s) 101, 296, 865, 920, 1192
BceAI ACGGC 3 cut(s) 845, 1196, 1443
BciT130I CCWGG 2 cut(s) 208, 299
BclI TGATCA 1 cut(s) 496
BcnI CCSGG 2 cut(s) 101, 1464
BcoDI GTCTC 2 cut(s) 342, 572
BcuI ACTAGT 1 cut(s) 1441
BfaI CTAG 2 cut(s) 807, 1442
BfmI CTRYAG 2 cut(s) 368, 585
BisI GCNGC 9 cut(s) 84, 381, 435, 492, 909, 912, 1067, 1070, 1347
BlpI GCTNAGC 1 cut(s) 444
BlsI GCNGC 9 cut(s) 85, 382, 436, 493, 910, 913, 1068, 1071, 1348
BmcAI AGTACT 1 cut(s) 1175
Bme1390I CCNGG 4 cut(s) 101, 208, 299, 1464
Bme18I GGWCC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 210, 831
BmiI GGNNCC 2 cut(s) 212, 1310
BmrFI CCNGG 4 cut(s) 101, 208, 299, 1464
BmsI GCATC 3 cut(s) 463, 994, 1439
BpiI GAAGAC 1 cut(s) 960
Bpu1102I GCTNAGC 1 cut(s) 444
BpuEI CTTGAG 2 cut(s) 608, 656
BpuMI CCSGG 2 cut(s) 101, 1464
BsaAI YACGTR 1 cut(s) 53
BsaJI CCNNGG 3 cut(s) 99, 384, 1106
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 1426, 1445
Bse21I CCTNAGG 1 cut(s) 318
BseBI CCWGG 2 cut(s) 208, 299
BseDI CCNNGG 3 cut(s) 99, 384, 1106
BseGI GGATG 3 cut(s) 307, 880, 1189
BseLI CCNNNNNNNGG 3 cut(s) 107, 1426, 1445
BseMII CTCAG 5 cut(s) 435, 473, 588, 674, 1529
BseXI GCAGC 9 cut(s) 70, 392, 421, 478, 920, 923, 1078, 1081, 1333
Bsh1236I CGCG 1 cut(s) 1167
BshFI GGCC 2 cut(s) 832, 1325
BsiSI CCGG 5 cut(s) 101, 575, 1049, 1215, 1463
BslFI GGGAC 3 cut(s) 166, 196, 911
BslI CCNNNNNNNGG 3 cut(s) 107, 1426, 1445
BsmAI GTCTC 2 cut(s) 342, 572
BsmFI GGGAC 3 cut(s) 166, 196, 911
BsmI GAATGC 1 cut(s) 316
BsnI GGCC 2 cut(s) 832, 1325
Bsp143I GATC 2 cut(s) 496, 565
Bsp1720I GCTNAGC 1 cut(s) 444
BspACI CCGC 2 cut(s) 1286, 1406
BspANI GGCC 2 cut(s) 832, 1325
BspCNI CTCAG 5 cut(s) 436, 472, 589, 673, 1528
BspFNI CGCG 1 cut(s) 1167
BspLI GGNNCC 2 cut(s) 212, 1310
BspPI GGATC 1 cut(s) 560
BspQI GCTCTTC 1 cut(s) 399
BssECI CCNNGG 3 cut(s) 99, 384, 1106
BssMI GATC 2 cut(s) 496, 565
BssNAI GTATAC 1 cut(s) 751
BssT1I CCWWGG 2 cut(s) 384, 1106
Bst1107I GTATAC 1 cut(s) 751
Bst2UI CCWGG 2 cut(s) 208, 299
Bst4CI ACNGT 8 cut(s) 505, 586, 823, 838, 1250, 1456, 1486, 1524
Bst6I CTCTTC 3 cut(s) 399, 533, 608
BstBAI YACGTR 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 415, 1323
BstDEI CTNAG 7 cut(s) 36, 318, 444, 459, 597, 660, 1515
BstF5I GGATG 3 cut(s) 307, 880, 1189
BstFNI CGCG 1 cut(s) 1167
BstKTI GATC 2 cut(s) 499, 568
BstMAI GTCTC 2 cut(s) 342, 572
BstMBI GATC 2 cut(s) 496, 565
BstMWI GCNNNNNNNGC 5 cut(s) 389, 398, 440, 1292, 1412
BstNI CCWGG 2 cut(s) 208, 299
BstSCI CCNGG 4 cut(s) 99, 206, 297, 1462
BstSFI CTRYAG 2 cut(s) 368, 585
BstUI CGCG 1 cut(s) 1167
BstV1I GCAGC 9 cut(s) 70, 392, 421, 478, 920, 923, 1078, 1081, 1333
BstV2I GAAGAC 1 cut(s) 960
BstXI CCANNNNNNTGG 2 cut(s) 161, 221
BstZ17I GTATAC 1 cut(s) 751
Bsu36I CCTNAGG 1 cut(s) 318
BsuRI GGCC 2 cut(s) 832, 1325
BtsCI GGATG 3 cut(s) 307, 880, 1189
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 415, 1323
Cfr13I GGNCC 2 cut(s) 210, 831
CseI GACGC 1 cut(s) 1156
Csp6I GTAC 2 cut(s) 54, 1174
CviAII CATG 4 cut(s) 185, 905, 1291, 1393
CviQI GTAC 2 cut(s) 54, 1174
DdeI CTNAG 7 cut(s) 36, 318, 444, 459, 597, 660, 1515
DpnI GATC 2 cut(s) 498, 567
DpnII GATC 2 cut(s) 496, 565
Eam1104I CTCTTC 3 cut(s) 399, 533, 608
EarI CTCTTC 3 cut(s) 399, 533, 608
EciI GGCGGA 1 cut(s) 1421
Eco130I CCWWGG 2 cut(s) 384, 1106
Eco47I GGWCC 1 cut(s) 210
Eco57I CTGAAG 1 cut(s) 702
Eco81I CCTNAGG 1 cut(s) 318
EcoO109I RGGNCCY 1 cut(s) 210
EcoRI GAATTC 2 cut(s) 285, 483
EcoRII CCWGG 2 cut(s) 206, 297
EcoT14I CCWWGG 2 cut(s) 384, 1106
ErhI CCWWGG 2 cut(s) 384, 1106
FaeI CATG 4 cut(s) 188, 908, 1294, 1396
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FaqI GGGAC 3 cut(s) 166, 196, 911
FatI CATG 4 cut(s) 184, 904, 1290, 1392
FbaI TGATCA 1 cut(s) 496
FblI GTMKAC 2 cut(s) 750, 1389
Fnu4HI GCNGC 9 cut(s) 84, 381, 435, 492, 909, 912, 1067, 1070, 1347
FokI GGATG 3 cut(s) 314, 887, 1176
Fsp4HI GCNGC 9 cut(s) 84, 381, 435, 492, 909, 912, 1067, 1070, 1347
FspBI CTAG 2 cut(s) 807, 1442
GluI GCNGC 9 cut(s) 84, 381, 435, 492, 909, 912, 1067, 1070, 1347
HaeIII GGCC 2 cut(s) 832, 1325
HapII CCGG 5 cut(s) 101, 575, 1049, 1215, 1463
HgaI GACGC 1 cut(s) 1156
Hin1II CATG 4 cut(s) 188, 908, 1294, 1396
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HpaII CCGG 5 cut(s) 101, 575, 1049, 1215, 1463
HphI GGTGA 5 cut(s) 676, 710, 944, 1262, 1501
Hpy166II GTNNAC 4 cut(s) 511, 751, 1390, 1504
Hpy188III TCNNGA 3 cut(s) 625, 862, 1340
Hpy8I GTNNAC 4 cut(s) 511, 751, 1390, 1504
HpyAV CCTTC 7 cut(s) 136, 473, 579, 1105, 1336, 1342, 1426
HpyCH4III ACNGT 8 cut(s) 505, 586, 823, 838, 1250, 1456, 1486, 1524
HpyCH4IV ACGT 1 cut(s) 52
HpyCH4V TGCA 8 cut(s) 62, 86, 401, 908, 971, 990, 1315, 1349
HpyF10VI GCNNNNNNNGC 5 cut(s) 389, 398, 440, 1292, 1412
HpyF3I CTNAG 7 cut(s) 36, 318, 444, 459, 597, 660, 1515
HpySE526I ACGT 1 cut(s) 52
Hsp92II CATG 4 cut(s) 188, 908, 1294, 1396
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 2 cut(s) 496, 565
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 3 cut(s) 319, 852, 1314
Lsp1109I GCAGC 9 cut(s) 70, 392, 421, 478, 920, 923, 1078, 1081, 1333
LweI GCATC 3 cut(s) 463, 994, 1439
MaeI CTAG 2 cut(s) 807, 1442
MaeII ACGT 1 cut(s) 52
MaeIII GTNAC 5 cut(s) 25, 122, 328, 1244, 1518
MalI GATC 2 cut(s) 498, 567
MboI GATC 2 cut(s) 496, 565
MfeI CAATTG 1 cut(s) 921
MlyI GAGTC 4 cut(s) 22, 457, 671, 1467
MmeI TCCRAC 4 cut(s) 56, 287, 633, 687
MnlI CCTC 7 cut(s) 534, 598, 660, 703, 1402, 1517, 1522
MroXI GAANNNNTTC 2 cut(s) 393, 483
MseI TTAA 2 cut(s) 429, 800
MslI CAYNNNNRTG 1 cut(s) 78
MspA1I CMGCKG 1 cut(s) 23
MspI CCGG 5 cut(s) 101, 575, 1049, 1215, 1463
MspR9I CCNGG 4 cut(s) 101, 208, 299, 1464
MunI CAATTG 1 cut(s) 921
Mva1269I GAATGC 1 cut(s) 316
MvaI CCWGG 2 cut(s) 208, 299
MvnI CGCG 1 cut(s) 1167
MwoI GCNNNNNNNGC 5 cut(s) 389, 398, 440, 1292, 1412
NciI CCSGG 2 cut(s) 101, 1464
NdeII GATC 2 cut(s) 496, 565
NlaIII CATG 4 cut(s) 188, 908, 1294, 1396
NlaIV GGNNCC 2 cut(s) 212, 1310
NmuCI GTSAC 1 cut(s) 1244
PciSI GCTCTTC 1 cut(s) 399
PctI GAATGC 1 cut(s) 316
PdmI GAANNNNTTC 2 cut(s) 393, 483
PfeI GAWTC 9 cut(s) 5, 112, 226, 656, 1089, 1186, 1225, 1449, 1467
PfoI TCCNGGA 2 cut(s) 297, 1462
PkrI GCNGC 9 cut(s) 85, 382, 436, 493, 910, 913, 1068, 1071, 1348
PleI GAGTC 4 cut(s) 21, 457, 671, 1467
PpsI GAGTC 4 cut(s) 21, 457, 671, 1467
Ppu21I YACGTR 1 cut(s) 53
PpuMI RGGWCCY 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 206, 297
PspGI CCWGG 2 cut(s) 206, 297
PspN4I GGNNCC 2 cut(s) 212, 1310
PspPI GGNCC 2 cut(s) 210, 831
PspPPI RGGWCCY 1 cut(s) 210
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 2 cut(s) 55, 1175
RsaNI GTAC 2 cut(s) 54, 1174
RseI CAYNNNNRTG 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 2 cut(s) 429, 800
SatI GCNGC 9 cut(s) 84, 381, 435, 492, 909, 912, 1067, 1070, 1347
Sau3AI GATC 2 cut(s) 496, 565
Sau96I GGNCC 2 cut(s) 210, 831
ScaI AGTACT 1 cut(s) 1175
SchI GAGTC 4 cut(s) 22, 457, 671, 1467
ScrFI CCNGG 4 cut(s) 101, 208, 299, 1464
SfaNI GCATC 3 cut(s) 463, 994, 1439
SfcI CTRYAG 2 cut(s) 368, 585
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 2 cut(s) 623, 671
SmoI CTYRAG 2 cut(s) 623, 671
SpeI ACTAGT 1 cut(s) 1441
SsiI CCGC 2 cut(s) 1286, 1406
SspI AATATT 2 cut(s) 690, 784
SspMI CTAG 2 cut(s) 807, 1442
StyD4I CCNGG 4 cut(s) 99, 206, 297, 1462
StyI CCWWGG 2 cut(s) 384, 1106
TaaI ACNGT 8 cut(s) 505, 586, 823, 838, 1250, 1456, 1486, 1524
TaiI ACGT 1 cut(s) 55
TaqI TCGA 1 cut(s) 1531
TaqII GACCGA 1 cut(s) 6
TatI WGTACW 1 cut(s) 1173
TfiI GAWTC 9 cut(s) 5, 112, 226, 656, 1089, 1186, 1225, 1449, 1467
Tru1I TTAA 2 cut(s) 429, 800
Tru9I TTAA 2 cut(s) 429, 800
TscAI CASTG 1 cut(s) 15
TseFI GTSAC 1 cut(s) 1244
TseI GCWGC 9 cut(s) 83, 380, 434, 491, 908, 911, 1066, 1069, 1346
Tsp45I GTSAC 1 cut(s) 1244
TspGWI ACGGA 1 cut(s) 1109
TspRI CASTG 1 cut(s) 15
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 5 cut(s) 134, 263, 285, 483, 1157
XmiI GTMKAC 2 cut(s) 750, 1389
XmnI GAANNNNTTC 2 cut(s) 393, 483
XspI CTAG 2 cut(s) 807, 1442
ZrmI AGTACT 1 cut(s) 1175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.