Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004482

Physical Location & Seq

Genomic Coordinates Reverse (-)

19964915 .. 19966005

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19360.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGTTGATCGGTCTGAGCCATTTGACAAGAAAAATGAGGAGCTCCAGGAAAGAGTCGCCTTGGAGGCTCATCTAGCGAAACTGTTTGCAAGCGTTTCATCTGTTAAAGCTGCGTATGCACAACTGCAGCATTCTCAGTCTCCCTATGATGCTGAAGGAATCCAAGCTGCTGACAAAGAGGTAGTCTCCGAATTGAAGAACTTGTCTGAGTTGAAGCGTTGTTTCTTAAAAAAACAGTTCGATCGATCTAAACCTGAGACTACCCTGGTTTTGGCGGAGATCGAGGAGCAGAAGAGTGTTCTAAAAACCTATGAAATCATGGGGAAAAAGTTGGAATCTCAGGTGAGGCTGAAGGACTCTGAAATTGTATTTCTCGAAGAAAAGTTAGAGGAGGCCAAGGATCATAATAAGTTGCTTGAGAAGCGATTAAACCAGAACCAGAGCGGGCAGCTACATGTGCTCGACAATCTTCATTTATCTGCTTTAAGTCCTAGCCATTTCATTACAGTTCTTCGACACACGGTAAAGTCCATCCGGAGCTTTGTTCGGATGATGGTGGATGATATGAAATCTGCCGGTTGGGACATTCATGCAGCAGCTAAAGCGATTGACCGCGATGTGCTTTATTGGAAAGAAGATCACAAGTGTTTTGCATTTGAACACTCTGTTTGCAAGGAAATGTTTGATGCTTTCCAGTACCCCAACTTCTCACTTCCAAATGAGTCCTTGCCGGAGAAAAAGAAACAACAGCAGCAGCTCTTTTTTGTGAGATTCACGGAACTCAAATCGATGAAGCCGAAGGACTATCTCTCCCAGAATCCCAGATCAGCATTTGCCAAGTTCTGCCGTGTCAAGTACTTACGACTGGTTCATCCCAAGATGGAAACATCATTTTTCGGCAATCTGAATCAAAGAAACCTCATCAATGCAGGTGAGTTTCCGAGCTCTGATTTCTTTGCTTCATTTGCTGAAATGGCAAAGCGTGTCTGGCTCCTGCATTGCTTGGCCTTCTCCTTCGATCCTGAAGCCGCAATCTTCCAACTTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

350

Amino Acids

40.54

Weight (kDa)

8.41

Isoelectric Point (pI)

48.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53380 AT1G53380 AT1G53380 AT1G53380 AT1G53380 AT3G14870 AT3G14870 AT3G14870 AT3G14870 AT3G14870
fragaria_vesca	FvH4_3g18160 FvH4_3g18160
malus_domestica	MD03G1276500.v1.1 MD11G1265400.v1.1
prunus_persica	Prupe.4G160500_v2.0.a1 Prupe.4G160500_v2.0.a1 Prupe.4G160500_v2.0.a1
pyrus_communis	pycom03g19360 pycom11g23340
rosa_chinensis	RchiOBHm_Chr5g0030591
rosa_laevigata	RLG00000033232
rosa_multiflora	Rmu_sc0003238.1_g000005
rosa_roxburghii	Rroxscaffold_1G00049700
rosa_rugosa	Rorug05G0118600 Rorug05G0118700 Rorug05G0118800 Rorug05G0118900
rosa_samantha	Rh5AG211000 Rh5BG210000 Rh5CG233700 Rh5DG214700
rosa_wichuraiana	Rw5G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	920
Acc36I	ACCTGC	1 cut(s)	920
AccBSI	CCGCTC	1 cut(s)	444
AccII	CGCG	1 cut(s)	615
AccIII	TCCGGA	1 cut(s)	534
AciI	CCGC	4 cut(s)	275, 444, 613, 1029
AclWI	GGATC	2 cut(s)	408, 1013
AcuI	CTGAAG	3 cut(s)	174, 371, 1044
AfaI	GTAC	2 cut(s)	698, 857
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	3 cut(s)	196, 214, 659
AjnI	CCWGG	2 cut(s)	45, 264
AluBI	AGCT	8 cut(s)	43, 110, 167, 451, 540, 599, 757, 945
AluI	AGCT	8 cut(s)	43, 110, 167, 451, 540, 599, 757, 945
Alw21I	GWGCWC	3 cut(s)	45, 462, 947
Alw26I	GTCTC	3 cut(s)	144, 190, 251
AlwI	GGATC	2 cut(s)	408, 1013
Aor13HI	TCCGGA	1 cut(s)	534
AoxI	GGCC	2 cut(s)	393, 1005
ApeKI	GCWGC	8 cut(s)	110, 127, 167, 448, 593, 596, 751, 754
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
AsuHPI	GGTGA	2 cut(s)	355, 944
BanII	GRGCYC	2 cut(s)	45, 947
BarI	GAAGNNNNNNTAC	2 cut(s)	689, 721
Bbv12I	GWGCWC	3 cut(s)	45, 462, 947
BbvI	GCAGC	8 cut(s)	97, 139, 154, 460, 605, 608, 763, 766
BccI	CCATC	3 cut(s)	539, 547, 874
BceAI	ACGGC	1 cut(s)	831
BciT130I	CCWGG	2 cut(s)	47, 266
BcoDI	GTCTC	3 cut(s)	144, 190, 251
BfaI	CTAG	2 cut(s)	74, 492
BfmI	CTRYAG	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	920
BglI	GCCNNNNNGGC	1 cut(s)	65
BisI	GCNGC	9 cut(s)	111, 128, 168, 449, 594, 597, 752, 755, 1029
BlsI	GCNGC	9 cut(s)	112, 129, 169, 450, 595, 598, 753, 756, 1030
BmcAI	AGTACT	1 cut(s)	857
Bme1390I	CCNGG	2 cut(s)	47, 266
BmiI	GGNNCC	1 cut(s)	992
BmrFI	CCNGG	2 cut(s)	47, 266
BmsI	GCATC	2 cut(s)	139, 676
BplI	GAGNNNNNCTC	2 cut(s)	170, 202
BpmI	CTGGAG	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	437
Bsa29I	ATCGAT	2 cut(s)	244, 788
BsaJI	CCNNGG	3 cut(s)	60, 264, 396
BsaWI	WCCGGW	1 cut(s)	534
BsaXI	ACNNNNNCTCC	2 cut(s)	794, 824
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	575
Bse1I	ACTGG	2 cut(s)	694, 870
Bse3DI	GCAATG	1 cut(s)	997
BseAI	TCCGGA	1 cut(s)	534
BseBI	CCWGG	2 cut(s)	47, 266
BseCI	ATCGAT	2 cut(s)	244, 788
BseDI	CCNNGG	3 cut(s)	60, 264, 396
BseGI	GGATG	4 cut(s)	531, 555, 565, 871
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	997
BseMII	CTCAG	5 cut(s)	6, 149, 198, 246, 353
BseNI	ACTGG	2 cut(s)	694, 870
BseRI	GAGGAG	3 cut(s)	53, 299, 404
BseXI	GCAGC	8 cut(s)	97, 139, 154, 460, 605, 608, 763, 766
Bsh1236I	CGCG	1 cut(s)	615
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	2 cut(s)	395, 1007
BshVI	ATCGAT	2 cut(s)	244, 788
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	3 cut(s)	45, 462, 947
BsiSI	CCGG	3 cut(s)	535, 576, 731
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	3 cut(s)	144, 190, 251
BsmFI	GGGAC	1 cut(s)	596
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	395, 1007
Bsp1286I	GDGCHC	3 cut(s)	45, 462, 947
Bsp13I	TCCGGA	1 cut(s)	534
Bsp143I	GATC	8 cut(s)	7, 241, 245, 279, 400, 637, 824, 1018
BspACI	CCGC	4 cut(s)	275, 444, 613, 1029
BspANI	GGCC	2 cut(s)	395, 1007
BspCNI	CTCAG	5 cut(s)	7, 148, 199, 247, 352
BspDI	ATCGAT	2 cut(s)	244, 788
BspEI	TCCGGA	1 cut(s)	534
BspFNI	CGCG	1 cut(s)	615
BspLI	GGNNCC	1 cut(s)	992
BspMAI	CTGCAG	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	920
BspPI	GGATC	2 cut(s)	408, 1013
BsrBI	CCGCTC	1 cut(s)	444
BsrDI	GCAATG	1 cut(s)	997
BsrFI	RCCGGY	1 cut(s)	575
BsrI	ACTGG	2 cut(s)	694, 870
BssAI	RCCGGY	1 cut(s)	575
BssECI	CCNNGG	3 cut(s)	60, 264, 396
BssMI	GATC	8 cut(s)	7, 241, 245, 279, 400, 637, 824, 1018
BssT1I	CCWWGG	2 cut(s)	60, 396
Bst2UI	CCWGG	2 cut(s)	47, 266
Bst4CI	ACNGT	4 cut(s)	84, 237, 508, 523
Bst6I	CTCTTC	1 cut(s)	287
BstC8I	GCNNGC	2 cut(s)	91, 446
BstDEI	CTNAG	6 cut(s)	15, 135, 207, 255, 339, 1043
BstF5I	GGATG	4 cut(s)	531, 555, 565, 871
BstFNI	CGCG	1 cut(s)	615
BstKTI	GATC	8 cut(s)	10, 244, 248, 282, 403, 640, 827, 1021
BstMAI	GTCTC	3 cut(s)	144, 190, 251
BstMBI	GATC	8 cut(s)	7, 241, 245, 279, 400, 637, 824, 1018
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	9 cut(s)	65, 74, 116, 421, 457, 602, 965, 974, 988
BstNI	CCWGG	2 cut(s)	47, 266
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	2 cut(s)	45, 264
BstSFI	CTRYAG	1 cut(s)	125
BstUI	CGCG	1 cut(s)	615
BstV1I	GCAGC	8 cut(s)	97, 139, 154, 460, 605, 608, 763, 766
Bsu15I	ATCGAT	2 cut(s)	244, 788
BsuRI	GGCC	2 cut(s)	395, 1007
BsuTUI	ATCGAT	2 cut(s)	244, 788
BtgZI	GCGATG	1 cut(s)	630
BtsCI	GGATG	4 cut(s)	531, 555, 565, 871
BveI	ACCTGC	1 cut(s)	920
Cac8I	GCNNGC	2 cut(s)	91, 446
Cfr10I	RCCGGY	1 cut(s)	575
ClaI	ATCGAT	2 cut(s)	244, 788
Csp6I	GTAC	2 cut(s)	697, 856
CviAII	CATG	3 cut(s)	319, 455, 590
CviQI	GTAC	2 cut(s)	697, 856
DdeI	CTNAG	6 cut(s)	15, 135, 207, 255, 339, 1043
DpnI	GATC	8 cut(s)	9, 243, 247, 281, 402, 639, 826, 1020
DpnII	GATC	8 cut(s)	7, 241, 245, 279, 400, 637, 824, 1018
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
EciI	GGCGGA	1 cut(s)	290
Ecl136II	GAGCTC	2 cut(s)	43, 945
Eco130I	CCWWGG	2 cut(s)	60, 396
Eco24I	GRGCYC	2 cut(s)	45, 947
Eco53kI	GAGCTC	2 cut(s)	43, 945
Eco57I	CTGAAG	3 cut(s)	174, 371, 1044
EcoICRI	GAGCTC	2 cut(s)	43, 945
EcoRII	CCWGG	2 cut(s)	45, 264
EcoT14I	CCWWGG	2 cut(s)	60, 396
EcoT38I	GRGCYC	2 cut(s)	45, 947
ErhI	CCWWGG	2 cut(s)	60, 396
FaeI	CATG	3 cut(s)	322, 458, 593
FaiI	YATR	8 cut(s)	117, 147, 312, 320, 405, 456, 566, 591
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	3 cut(s)	318, 454, 589
FauI	CCCGC	1 cut(s)	437
Fnu4HI	GCNGC	9 cut(s)	111, 128, 168, 449, 594, 597, 752, 755, 1029
FokI	GGATG	4 cut(s)	518, 562, 572, 858
FriOI	GRGCYC	2 cut(s)	45, 947
Fsp4HI	GCNGC	9 cut(s)	111, 128, 168, 449, 594, 597, 752, 755, 1029
FspBI	CTAG	2 cut(s)	74, 492
GluI	GCNGC	9 cut(s)	111, 128, 168, 449, 594, 597, 752, 755, 1029
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	2 cut(s)	395, 1007
HapII	CCGG	3 cut(s)	535, 576, 731
Hin1II	CATG	3 cut(s)	322, 458, 593
HinfI	GANTC	8 cut(s)	54, 159, 335, 356, 722, 771, 817, 907
HpaII	CCGG	3 cut(s)	535, 576, 731
HphI	GGTGA	2 cut(s)	355, 944
Hpy188I	TCNGA	8 cut(s)	16, 190, 208, 361, 549, 906, 942, 949
Hpy188III	TCNNGA	3 cut(s)	374, 535, 1022
HpyAV	CCTTC	5 cut(s)	149, 346, 793, 1018, 1024
HpyCH4III	ACNGT	4 cut(s)	84, 237, 508, 523
HpyCH4V	TGCA	8 cut(s)	89, 119, 127, 593, 653, 672, 929, 997
HpyF10VI	GCNNNNNNNGC	9 cut(s)	65, 74, 116, 421, 457, 602, 965, 974, 988
HpyF3I	CTNAG	6 cut(s)	15, 135, 207, 255, 339, 1043
Hsp92II	CATG	3 cut(s)	322, 458, 593
Kpn2I	TCCGGA	1 cut(s)	534
Kzo9I	GATC	8 cut(s)	7, 241, 245, 279, 400, 637, 824, 1018
LmnI	GCTCC	5 cut(s)	40, 48, 286, 537, 996
Lsp1109I	GCAGC	8 cut(s)	97, 139, 154, 460, 605, 608, 763, 766
LweI	GCATC	2 cut(s)	139, 676
MaeI	CTAG	2 cut(s)	74, 492
MalI	GATC	8 cut(s)	9, 243, 247, 281, 402, 639, 826, 1020
MbiI	CCGCTC	1 cut(s)	444
MboI	GATC	8 cut(s)	7, 241, 245, 279, 400, 637, 824, 1018
MboII	GAAGA	7 cut(s)	208, 304, 389, 461, 503, 647, 1027
MhlI	GDGCHC	3 cut(s)	45, 462, 947
MluCI	AATT	2 cut(s)	191, 363
MlyI	GAGTC	3 cut(s)	63, 350, 731
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	8 cut(s)	31, 58, 172, 277, 339, 382, 385, 929
MroI	TCCGGA	1 cut(s)	534
MseI	TTAA	4 cut(s)	105, 227, 428, 485
MspI	CCGG	3 cut(s)	535, 576, 731
MspR9I	CCNGG	2 cut(s)	47, 266
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	2 cut(s)	47, 266
MvnI	CGCG	1 cut(s)	615
MwoI	GCNNNNNNNGC	9 cut(s)	65, 74, 116, 421, 457, 602, 965, 974, 988
NdeII	GATC	8 cut(s)	7, 241, 245, 279, 400, 637, 824, 1018
NlaIII	CATG	3 cut(s)	322, 458, 593
NlaIV	GGNNCC	1 cut(s)	992
NspI	RCATGY	1 cut(s)	458
PaqCI	CACCTGC	1 cut(s)	920
PciI	ACATGT	1 cut(s)	454
PcsI	WCGNNNNNNNCGW	1 cut(s)	794
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	5 cut(s)	159, 335, 771, 817, 907
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	9 cut(s)	112, 129, 169, 450, 595, 598, 753, 756, 1030
Ple19I	CGATCG	1 cut(s)	244
PleI	GAGTC	3 cut(s)	62, 350, 730
PpsI	GAGTC	3 cut(s)	62, 350, 730
PscI	ACATGT	1 cut(s)	454
Psp124BI	GAGCTC	2 cut(s)	45, 947
Psp6I	CCWGG	2 cut(s)	45, 264
PspGI	CCWGG	2 cut(s)	45, 264
PspN4I	GGNNCC	1 cut(s)	992
PstI	CTGCAG	1 cut(s)	129
PvuI	CGATCG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	698, 857
RsaNI	GTAC	2 cut(s)	697, 856
SacI	GAGCTC	2 cut(s)	45, 947
SaqAI	TTAA	4 cut(s)	105, 227, 428, 485
SatI	GCNGC	9 cut(s)	111, 128, 168, 449, 594, 597, 752, 755, 1029
Sau3AI	GATC	8 cut(s)	7, 241, 245, 279, 400, 637, 824, 1018
ScaI	AGTACT	1 cut(s)	857
SchI	GAGTC	3 cut(s)	63, 350, 731
ScrFI	CCNGG	2 cut(s)	47, 266
SduI	GDGCHC	3 cut(s)	45, 462, 947
SfaNI	GCATC	2 cut(s)	139, 676
SfcI	CTRYAG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	2 cut(s)	191, 363
SsiI	CCGC	4 cut(s)	275, 444, 613, 1029
SspMI	CTAG	2 cut(s)	74, 492
SstI	GAGCTC	2 cut(s)	45, 947
StyD4I	CCNGG	2 cut(s)	45, 264
StyI	CCWWGG	2 cut(s)	60, 396
TaaI	ACNGT	4 cut(s)	84, 237, 508, 523
TaqI	TCGA	8 cut(s)	240, 244, 282, 375, 462, 514, 788, 1017
TasI	AATT	2 cut(s)	191, 363
TatI	WGTACW	1 cut(s)	855
TauI	GCSGC	1 cut(s)	1031
TfiI	GAWTC	5 cut(s)	159, 335, 771, 817, 907
Tru1I	TTAA	4 cut(s)	105, 227, 428, 485
Tru9I	TTAA	4 cut(s)	105, 227, 428, 485
TseI	GCWGC	8 cut(s)	110, 127, 167, 448, 593, 596, 751, 754
TspDTI	ATGAA	9 cut(s)	87, 327, 461, 490, 578, 581, 806, 860, 951
TspGWI	ACGGA	1 cut(s)	791
XceI	RCATGY	1 cut(s)	458
XspI	CTAG	2 cut(s)	74, 492
ZrmI	AGTACT	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.