Rorug05G0118600

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004482
Physical Location & Seq
Reverse (-)
10486418 .. 10487548
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0118600.1

Sequence Viewer

Length: 1131 bp
ATGGATCTCAAAGAATCCATCAGCAACCAAACTGAAGTCGGACTGGAGATAACGAAGCAACTGCTCCAAACCGAGTTCAAAGACAAGAACATGGTGTACTCCTCAGTATCTATCCACATCGTGCTGAGTCTAATAGCAGCTGGGAAAACTAGTTCCGATCTGGACCAGTTTCTGTCTTTCCTCAAGTCCAAGTCCATCGACGACCTCAACTCCTTCGCCTACAATCTCGTAACTTCCATTTTGGCCGATGCATCCCGCGGCGGCGGGCCATGTTTGAACTTCGCCAATGGTCTCTGGCTCGACGAGTCTCTCCCACTGGATCATTCTTACGAGAAGGTTCTGTCCACTTCCTACAAGGCGGCTCTAAACCACGTCGATTTCAAATCCAACCCCGAGGGAGTGAGAACCCAAGTGAATTCCTGGATCAACAAGGAGACCAATGGCCTTATCCCTGAGATTCTTTCTCCGCACTCAGTCACCACCCTAACGAGTCGCATCTTCGCAAACGCCTTATACTTCAAAGCAACTTGGGACGATGAGTACTTTGACGCATCAAGAACCAGAAAAGGTGAGTTTCACCTTCTGAACGGGGATTTAGTTAAGGGAGTGCGTTTCATGACCAGCGGTCATCGCCACTCCATAAGTGCCTATGATGGTTTTAAAGTCTTGAGTCTTCCTTACAAACGAAGTCGAGATTACAAGGACATGCGAGGTTATAAAATGCACTTGCTTCTTCCAGATGCAAGAGATGGGCTGCCAGCTCTGGCCGAGAGGGTTTGTTCAGAGTCTGGGTTTTTAGATCGTCATCTTCAATGGAATGAGGTTAAAGTGCGGAAATTGTTGATCCGAAAGTTTAAGATCTCATCTAGGTTTGAGGCCTCCAGTGTTATGGAGAAACTAGGGCTGCCGGCTGATGCCATGGTGATGATGCATGAAGCCTTGATTGAAGTTGATGAAAATGGCACAACAGCTGCAGCTGCTACTGTTGCCCAGTCATACTGGGCTCTTGCTCCGCCGCCTGAAGTGAAAGAAGAAGACTTTGTGGCTGATCACCCATTCATGTTTCTCATTAAAGAAGGTCGTGGAACGGTGCTGTTCATGGGGCATGTGCTCAATCCACTTGCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

376

Amino Acids

42.06

Weight (kDa)

6.19

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 9 - 373 4.7e-67 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 717
AccB7I CCANNNNNTGG 1 cut(s) 1124
AccII CGCG 1 cut(s) 258
AclWI GGATC 4 cut(s) 12, 327, 431, 838
AcoI YGGCCR 2 cut(s) 243, 765
AcsI RAATTY 1 cut(s) 415
AcuI CTGAAG 2 cut(s) 54, 1041
AdeI CACNNNGTG 1 cut(s) 121
AfaI GTAC 2 cut(s) 98, 542
AfiI CCNNNNNNNGG 1 cut(s) 1124
AgsI TTSAA 6 cut(s) 79, 277, 382, 520, 812, 947
AhdI GACNNNNNGTC 1 cut(s) 624
AhlI ACTAGT 1 cut(s) 149
AjiI CACGTC 1 cut(s) 373
AjnI CCWGG 1 cut(s) 419
AloI GAACNNNNNNTCC 2 cut(s) 136, 168
AluBI AGCT 4 cut(s) 140, 761, 971, 977
AluI AGCT 4 cut(s) 140, 761, 971, 977
Alw21I GWGCWC 1 cut(s) 1113
Alw26I GTCTC 3 cut(s) 296, 312, 428
AlwI GGATC 4 cut(s) 12, 327, 431, 838
AlwNI CAGNNNCTG 2 cut(s) 172, 788
Ama87I CYCGRG 1 cut(s) 392
AoxI GGCC 5 cut(s) 243, 266, 442, 765, 876
ApeKI GCWGC 6 cut(s) 137, 754, 904, 971, 974, 977
ApoI RAATTY 1 cut(s) 415
AspS9I GGNCC 2 cut(s) 163, 266
AsuHPI GGTGA 5 cut(s) 469, 569, 581, 934, 1043
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 1006
BbsI GAAGAC 2 cut(s) 665, 1041
Bbv12I GWGCWC 1 cut(s) 1113
BbvI GCAGC 6 cut(s) 149, 741, 891, 958, 964, 986
BccI CCATC 4 cut(s) 26, 203, 647, 743
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BciT130I CCWGG 1 cut(s) 421
BclI TGATCA 1 cut(s) 1048
BcoDI GTCTC 3 cut(s) 296, 312, 428
BcuI ACTAGT 1 cut(s) 149
BfaI CTAG 3 cut(s) 150, 867, 899
BfmI CTRYAG 1 cut(s) 972
BglII AGATCT 1 cut(s) 858
BmcAI AGTACT 1 cut(s) 542
Bme1390I CCNGG 1 cut(s) 421
Bme18I GGWCC 1 cut(s) 163
BmeRI GACNNNNNGTC 1 cut(s) 624
BmeT110I CYCGRG 1 cut(s) 392
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 163, 266
BmrFI CCNGG 1 cut(s) 421
BmrI ACTGGG 2 cut(s) 985, 1009
BmsI GCATC 7 cut(s) 238, 260, 504, 560, 730, 904, 918
BmuI ACTGGG 2 cut(s) 985, 1009
BpiI GAAGAC 2 cut(s) 665, 1041
BpmI CTGGAG 2 cut(s) 65, 865
BpuEI CTTGAG 2 cut(s) 167, 688
BsaBI GATNNNNATC 1 cut(s) 804
BsaI GGTCTC 2 cut(s) 296, 428
BsaJI CCNNGG 3 cut(s) 256, 393, 918
BsaXI ACNNNNNCTCC 2 cut(s) 194, 224
Bsc4I CCNNNNNNNGG 1 cut(s) 1124
Bse118I RCCGGY 1 cut(s) 907
Bse1I ACTGG 6 cut(s) 48, 166, 321, 882, 991, 1004
Bse8I GATNNNNATC 1 cut(s) 804
BseBI CCWGG 1 cut(s) 421
BseDI CCNNGG 3 cut(s) 256, 393, 918
BseGI GGATG 1 cut(s) 251
BseJI GATNNNNATC 1 cut(s) 804
BseLI CCNNNNNNNGG 1 cut(s) 1124
BseMII CTCAG 4 cut(s) 116, 117, 444, 486
BseNI ACTGG 6 cut(s) 48, 166, 321, 882, 991, 1004
BseRI GAGGAG 1 cut(s) 91
BseXI GCAGC 6 cut(s) 149, 741, 891, 958, 964, 986
BseYI CCCAGC 1 cut(s) 140
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 5 cut(s) 245, 268, 444, 767, 878
BsiHKAI GWGCWC 1 cut(s) 1113
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 1 cut(s) 908
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 1 cut(s) 1124
BsmAI GTCTC 3 cut(s) 296, 312, 428
BsmFI GGGAC 1 cut(s) 545
BsnI GGCC 5 cut(s) 245, 268, 444, 767, 878
Bso31I GGTCTC 2 cut(s) 296, 428
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 1006, 1113
Bsp143I GATC 8 cut(s) 4, 157, 319, 423, 799, 843, 858, 1048
Bsp19I CCATGG 1 cut(s) 918
BspANI GGCC 5 cut(s) 245, 268, 444, 767, 878
BspCNI CTCAG 4 cut(s) 116, 117, 445, 485
BspFNI CGCG 1 cut(s) 258
BspHI TCATGA 1 cut(s) 615
BspMAI CTGCAG 1 cut(s) 976
BspPI GGATC 4 cut(s) 12, 327, 431, 838
BspTNI GGTCTC 2 cut(s) 296, 428
BsrFI RCCGGY 1 cut(s) 907
BsrI ACTGG 6 cut(s) 48, 166, 321, 882, 991, 1004
BssAI RCCGGY 1 cut(s) 907
BssECI CCNNGG 3 cut(s) 256, 393, 918
BssMI GATC 8 cut(s) 4, 157, 319, 423, 799, 843, 858, 1048
BssT1I CCWWGG 1 cut(s) 918
Bst2UI CCWGG 1 cut(s) 421
Bst4CI ACNGT 2 cut(s) 985, 1090
BstC8I GCNNGC 4 cut(s) 266, 759, 909, 1126
BstDEI CTNAG 4 cut(s) 103, 125, 453, 472
BstDSI CCRYGG 2 cut(s) 256, 918
BstF5I GGATG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 258
BstKTI GATC 8 cut(s) 7, 160, 322, 426, 802, 846, 861, 1051
BstMAI GTCTC 3 cut(s) 296, 312, 428
BstMBI GATC 8 cut(s) 4, 157, 319, 423, 799, 843, 858, 1048
BstMWI GCNNNNNNNGC 3 cut(s) 630, 977, 986
BstNI CCWGG 1 cut(s) 421
BstNSI RCATGY 2 cut(s) 709, 1109
BstSCI CCNGG 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 972
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 6 cut(s) 149, 741, 891, 958, 964, 986
BstV2I GAAGAC 2 cut(s) 665, 1041
BstX2I RGATCY 2 cut(s) 4, 858
BstXI CCANNNNNNTGG 1 cut(s) 889
BstYI RGATCY 2 cut(s) 4, 858
BsuRI GGCC 5 cut(s) 245, 268, 444, 767, 878
BtgI CCRYGG 2 cut(s) 256, 918
BtgZI GCGATG 1 cut(s) 614
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 1 cut(s) 251
BtsIMutI CAGTG 2 cut(s) 314, 889
Cac8I GCNNGC 4 cut(s) 266, 759, 909, 1126
CaiI CAGNNNCTG 2 cut(s) 172, 788
CciI TCATGA 1 cut(s) 615
Cfr10I RCCGGY 1 cut(s) 907
Cfr13I GGNCC 2 cut(s) 163, 266
Cfr42I CCGCGG 1 cut(s) 259
CseI GACGC 1 cut(s) 557
Csp6I GTAC 2 cut(s) 97, 541
CviAII CATG 9 cut(s) 91, 270, 616, 706, 919, 932, 1060, 1099, 1106
CviQI GTAC 2 cut(s) 97, 541
DdeI CTNAG 4 cut(s) 103, 125, 453, 472
DpnI GATC 8 cut(s) 6, 159, 321, 425, 801, 845, 860, 1050
DpnII GATC 8 cut(s) 4, 157, 319, 423, 799, 843, 858, 1048
DraI TTTAAA 1 cut(s) 661
DraIII CACNNNGTG 1 cut(s) 121
DriI GACNNNNNGTC 1 cut(s) 624
EaeI YGGCCR 2 cut(s) 243, 765
Eam1105I GACNNNNNGTC 1 cut(s) 624
EciI GGCGGA 1 cut(s) 1002
Eco130I CCWWGG 1 cut(s) 918
Eco147I AGGCCT 1 cut(s) 878
Eco24I GRGCYC 1 cut(s) 1006
Eco31I GGTCTC 2 cut(s) 296, 428
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 54, 1041
Eco88I CYCGRG 1 cut(s) 392
EcoRI GAATTC 1 cut(s) 415
EcoRII CCWGG 1 cut(s) 419
EcoT14I CCWWGG 1 cut(s) 918
EcoT22I ATGCAT 2 cut(s) 253, 933
EcoT38I GRGCYC 1 cut(s) 1006
ErhI CCWWGG 1 cut(s) 918
FaeI CATG 9 cut(s) 94, 273, 619, 709, 922, 935, 1063, 1102, 1109
FaqI GGGAC 1 cut(s) 545
FatI CATG 9 cut(s) 90, 269, 615, 705, 918, 931, 1059, 1098, 1105
FauI CCCGC 2 cut(s) 257, 263
FbaI TGATCA 1 cut(s) 1048
FokI GGATG 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 1006
FspBI CTAG 3 cut(s) 150, 867, 899
GsaI CCCAGC 1 cut(s) 144
GsuI CTGGAG 2 cut(s) 65, 865
HaeIII GGCC 5 cut(s) 245, 268, 444, 767, 878
HapII CCGG 1 cut(s) 908
HgaI GACGC 1 cut(s) 557
Hin1II CATG 9 cut(s) 94, 273, 619, 709, 922, 935, 1063, 1102, 1109
HinfI GANTC 7 cut(s) 14, 127, 305, 457, 490, 670, 785
HpaII CCGG 1 cut(s) 908
HphI GGTGA 5 cut(s) 469, 569, 581, 934, 1043
Hpy166II GTNNAC 2 cut(s) 97, 345
Hpy188I TCNGA 5 cut(s) 41, 157, 585, 784, 848
Hpy188III TCNNGA 6 cut(s) 161, 555, 616, 667, 692, 737
Hpy8I GTNNAC 2 cut(s) 97, 345
Hpy99I CGWCG 3 cut(s) 203, 305, 377
HpyAV CCTTC 4 cut(s) 223, 328, 590, 1070
HpyCH4III ACNGT 2 cut(s) 985, 1090
HpyCH4IV ACGT 1 cut(s) 372
HpyCH4V TGCA 5 cut(s) 251, 724, 743, 931, 974
HpyF10VI GCNNNNNNNGC 3 cut(s) 630, 977, 986
HpyF3I CTNAG 4 cut(s) 103, 125, 453, 472
HpySE526I ACGT 1 cut(s) 372
Hsp92II CATG 9 cut(s) 94, 273, 619, 709, 922, 935, 1063, 1102, 1109
KroI GCCGGC 1 cut(s) 907
KroNI GCCGGC 1 cut(s) 909
Ksp22I TGATCA 1 cut(s) 1048
KspI CCGCGG 1 cut(s) 259
Kzo9I GATC 8 cut(s) 4, 157, 319, 423, 799, 843, 858, 1048
LmnI GCTCC 2 cut(s) 69, 1015
Lsp1109I GCAGC 6 cut(s) 149, 741, 891, 958, 964, 986
LweI GCATC 7 cut(s) 238, 260, 504, 560, 730, 904, 918
MaeI CTAG 3 cut(s) 150, 867, 899
MaeII ACGT 1 cut(s) 372
MaeIII GTNAC 2 cut(s) 229, 475
MalI GATC 8 cut(s) 6, 159, 321, 425, 801, 845, 860, 1050
MboI GATC 8 cut(s) 4, 157, 319, 423, 799, 843, 858, 1048
MboII GAAGA 6 cut(s) 490, 665, 725, 800, 1043, 1046
MflI RGATCY 2 cut(s) 4, 858
MhlI GDGCHC 2 cut(s) 1006, 1113
MluCI AATT 2 cut(s) 415, 836
MlyI GAGTC 5 cut(s) 136, 314, 499, 679, 794
MmeI TCCRAC 2 cut(s) 19, 411
MnlI CCTC 9 cut(s) 112, 191, 215, 388, 704, 765, 814, 868, 889
Mph1103I ATGCAT 2 cut(s) 253, 933
MroNI GCCGGC 1 cut(s) 907
MseI TTAA 5 cut(s) 600, 660, 825, 855, 1071
MslI CAYNNNNRTG 1 cut(s) 923
MspA1I CMGCKG 5 cut(s) 140, 258, 624, 971, 977
MspI CCGG 1 cut(s) 908
MspR9I CCNGG 1 cut(s) 421
MvaI CCWGG 1 cut(s) 421
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 3 cut(s) 630, 977, 986
NaeI GCCGGC 1 cut(s) 909
NcoI CCATGG 1 cut(s) 918
NdeII GATC 8 cut(s) 4, 157, 319, 423, 799, 843, 858, 1048
NgoMIV GCCGGC 1 cut(s) 907
NlaIII CATG 9 cut(s) 94, 273, 619, 709, 922, 935, 1063, 1102, 1109
NmeAIII GCCGAG 1 cut(s) 793
NmuCI GTSAC 1 cut(s) 475
NsiI ATGCAT 2 cut(s) 253, 933
NspI RCATGY 2 cut(s) 709, 1109
PagI TCATGA 1 cut(s) 615
PceI AGGCCT 1 cut(s) 878
PdiI GCCGGC 1 cut(s) 909
PfeI GAWTC 2 cut(s) 14, 457
PflMI CCANNNNNTGG 1 cut(s) 1124
PfoI TCCNGGA 1 cut(s) 419
PleI GAGTC 5 cut(s) 135, 313, 498, 678, 793
PpsI GAGTC 5 cut(s) 135, 313, 498, 678, 793
PsiI TTATAA 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 419
PspFI CCCAGC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 419
PspPI GGNCC 2 cut(s) 163, 266
PsrI GAACNNNNNNTAC 2 cut(s) 80, 112
PstI CTGCAG 1 cut(s) 976
PstNI CAGNNNCTG 2 cut(s) 172, 788
PsuI RGATCY 2 cut(s) 4, 858
PvuII CAGCTG 3 cut(s) 140, 971, 977
RsaI GTAC 2 cut(s) 98, 542
RsaNI GTAC 2 cut(s) 97, 541
RseI CAYNNNNRTG 1 cut(s) 923
SacII CCGCGG 1 cut(s) 259
SaqAI TTAA 5 cut(s) 600, 660, 825, 855, 1071
Sau3AI GATC 8 cut(s) 4, 157, 319, 423, 799, 843, 858, 1048
Sau96I GGNCC 2 cut(s) 163, 266
ScaI AGTACT 1 cut(s) 542
SchI GAGTC 5 cut(s) 136, 314, 499, 679, 794
ScrFI CCNGG 1 cut(s) 421
SduI GDGCHC 2 cut(s) 1006, 1113
SfaNI GCATC 7 cut(s) 238, 260, 504, 560, 730, 904, 918
SfcI CTRYAG 1 cut(s) 972
Sfr303I CCGCGG 1 cut(s) 259
SgrBI CCGCGG 1 cut(s) 259
SinI GGWCC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 923
SmlI CTYRAG 2 cut(s) 182, 667
SmoI CTYRAG 2 cut(s) 182, 667
SpeI ACTAGT 1 cut(s) 149
Sse9I AATT 2 cut(s) 415, 836
SseBI AGGCCT 1 cut(s) 878
SspMI CTAG 3 cut(s) 150, 867, 899
StuI AGGCCT 1 cut(s) 878
StyD4I CCNGG 1 cut(s) 419
StyI CCWWGG 1 cut(s) 918
TaaI ACNGT 2 cut(s) 985, 1090
TaiI ACGT 1 cut(s) 375
TaqI TCGA 4 cut(s) 198, 300, 375, 691
TasI AATT 2 cut(s) 415, 836
TatI WGTACW 2 cut(s) 96, 540
TauI GCSGC 4 cut(s) 261, 264, 362, 1018
TfiI GAWTC 2 cut(s) 14, 457
Tru1I TTAA 5 cut(s) 600, 660, 825, 855, 1071
Tru9I TTAA 5 cut(s) 600, 660, 825, 855, 1071
TscAI CASTG 2 cut(s) 321, 889
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 6 cut(s) 137, 754, 904, 971, 974, 977
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 5 cut(s) 604, 948, 969, 1048, 1087
TspRI CASTG 2 cut(s) 321, 889
Van91I CCANNNNNTGG 1 cut(s) 1124
VpaK11BI GGWCC 1 cut(s) 163
XapI RAATTY 1 cut(s) 415
XceI RCATGY 2 cut(s) 709, 1109
XspI CTAG 3 cut(s) 150, 867, 899
ZrmI AGTACT 1 cut(s) 542
Zsp2I ATGCAT 2 cut(s) 253, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.