Rorug05G0118800

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004482
Physical Location & Seq
Reverse (-)
10492823 .. 10494076
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0118800.1

Sequence Viewer

Length: 1149 bp
ATGGATTTCAAAGCTCTCAAAGCTCTCAAAGAAACGATCAGTAACCAAACCGACGTCGCATTGGAGATAACCAAGCAACTCCTTCAAACAGAATTGAAGGACAAGAACATGGTGTACTCGCCTCTATCCATCCATATCGTGCTTAGCATGATAGCCGCTGATGAAACCGGTCCTTCTCTGGACCAGTTTCTATCTGTCCTCAAGTCCAAGTCCACCGACGACCTCAACTCCCTCGCCTTCAACCTAGTCACGGCCGTTTTAGCCGATGGCTCCGCCAGTTGTGGTCCATGTTTGAACTTCGCCAATGGTCTTTGGGTCCGCGAGCCTCATTCTCTCGAATCATCTTACCAACAGGTTCTGTGCAATTCTTACAAGGCCTCAATTAAGCAAGTCACTATGGGAACCAGTTCCGAGGAGGTGAGAACTGAAGTGAATGCATGGGTGAAGGAACAGACTCGCGGCTTCATCCCTGAGATTCTTCCTCCAGGCTCAGTGAATGGGATTCGCATTAGTGCAAATGCTTTATACTTCAAAGCAACATGGTACGAAGAGTACTTCCATGAATCAGAGACCAAAGAGGATGTGTTTCACCTTCTGGGGGGAGACATAGTCGATAAAGTACCTTTCATGACCAGCAGTGCTGAGCACTGTATTACTGCCTTCGAAGGCTTCAAAGCCTTGAGACTTCCTTACCAAGCAAGTGAAGACTACAAGGATTGCCGATCCTTTTCTATGTGGTTGCTTCTTCCAGATGCAATAGATGGGCTGCCAGCTCTGGCGCATAGAGTTTGTTCAGAGCCTGGGTTTATAGATGTTCACCTTAGATCGTGGGAAAGTGTTGAGGTTGGTAAATTCTTGATCCCAAAGTTCAAGATTTCTACTAGGTTTGAAGCCTCCGATATTCTGGGGAAACTAGGGCTGACGGCTCGTTCCTCGGAGATGTATCATCAAGCCATAATTGAAGTTAATGAAAAAGACACAACAGCTGCAGCTGCTACTGTTGATGATATGTGTTGTGCTTTGTGTGAAGATTATAGGATTAAAAAGAAAGAAGACTTTGTGGCGGATCACCCATTCATGTTTCTCATAAAGGAAGATAGGACCGGAACGGTGCTGTTCATGGGACATGTGCTCAATCCTCTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

382

Amino Acids

42.72

Weight (kDa)

5.11

Isoelectric Point (pI)

30.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 15 - 380 1.7e-67 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
AccII CGCG 2 cut(s) 321, 459
AciI CCGC 5 cut(s) 156, 273, 319, 459, 1064
AclWI GGATC 3 cut(s) 717, 853, 1074
AcoI YGGCCR 1 cut(s) 252
AcsI RAATTY 1 cut(s) 851
AcuI CTGAAG 1 cut(s) 447
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 4 cut(s) 116, 545, 554, 621
AfiI CCNNNNNNNGG 2 cut(s) 250, 598
AflIII ACRYGT 1 cut(s) 1126
AgeI ACCGGT 1 cut(s) 167
AjnI CCWGG 2 cut(s) 484, 799
AluBI AGCT 5 cut(s) 14, 23, 773, 986, 992
AluI AGCT 5 cut(s) 14, 23, 773, 986, 992
Alw21I GWGCWC 2 cut(s) 648, 1134
Alw26I GTCTC 3 cut(s) 563, 597, 676
AlwI GGATC 3 cut(s) 717, 853, 1074
AlwNI CAGNNNCTG 2 cut(s) 358, 800
AoxI GGCC 2 cut(s) 252, 375
ApeKI GCWGC 4 cut(s) 766, 986, 989, 992
ApoI RAATTY 1 cut(s) 851
AsiGI ACCGGT 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 406
AspLEI GCGC 1 cut(s) 781
AspS9I GGNCC 5 cut(s) 170, 181, 284, 316, 1101
AsuHPI GGTGA 5 cut(s) 430, 454, 581, 809, 1061
AsuII TTCGAA 1 cut(s) 663
AvaII GGWCC 5 cut(s) 170, 181, 284, 316, 1101
BbsI GAAGAC 2 cut(s) 711, 1059
Bbv12I GWGCWC 2 cut(s) 648, 1134
BbvI GCAGC 4 cut(s) 753, 973, 979, 1001
BccI CCATC 3 cut(s) 137, 260, 755
BceAI ACGGC 3 cut(s) 239, 267, 939
BciT130I CCWGG 2 cut(s) 486, 801
BcoDI GTCTC 3 cut(s) 563, 597, 676
BfaI CTAG 3 cut(s) 245, 882, 914
BfmI CTRYAG 1 cut(s) 987
BisI GCNGC 6 cut(s) 156, 460, 767, 987, 990, 993
BlpI GCTNAGC 2 cut(s) 143, 642
BlsI GCNGC 6 cut(s) 157, 461, 768, 988, 991, 994
BmcAI AGTACT 1 cut(s) 554
Bme1390I CCNGG 2 cut(s) 486, 801
Bme18I GGWCC 5 cut(s) 170, 181, 284, 316, 1101
BmgT120I GGNCC 5 cut(s) 170, 181, 284, 316, 1101
BmiI GGNNCC 3 cut(s) 271, 317, 403
BmrFI CCNGG 2 cut(s) 486, 801
BmsI GCATC 1 cut(s) 742
BpiI GAAGAC 2 cut(s) 711, 1059
BpmI CTGGAG 1 cut(s) 468
Bpu1102I GCTNAGC 2 cut(s) 143, 642
Bpu14I TTCGAA 1 cut(s) 663
BpuEI CTTGAG 2 cut(s) 185, 700
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 563
BsaJI CCNNGG 3 cut(s) 411, 800, 933
BsaWI WCCGGW 2 cut(s) 167, 1103
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 594, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 598
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 3 cut(s) 184, 276, 405
BseBI CCWGG 2 cut(s) 486, 801
BseDI CCNNGG 3 cut(s) 411, 800, 933
BseGI GGATG 3 cut(s) 129, 465, 586
BseLI CCNNNNNNNGG 2 cut(s) 250, 598
BseMII CTCAG 3 cut(s) 462, 504, 633
BseNI ACTGG 3 cut(s) 184, 276, 405
BseRI GAGGAG 1 cut(s) 428
BseX3I CGGCCG 1 cut(s) 252
BseXI GCAGC 4 cut(s) 753, 973, 979, 1001
Bsh1236I CGCG 2 cut(s) 321, 459
Bsh1285I CGRYCG 1 cut(s) 255
BshFI GGCC 2 cut(s) 254, 377
BshTI ACCGGT 1 cut(s) 167
BsiEI CGRYCG 1 cut(s) 255
BsiHKAI GWGCWC 2 cut(s) 648, 1134
BsiSI CCGG 2 cut(s) 168, 1104
BslFI GGGAC 1 cut(s) 1137
BslI CCNNNNNNNGG 2 cut(s) 250, 598
BsmAI GTCTC 3 cut(s) 563, 597, 676
BsmFI GGGAC 1 cut(s) 1137
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 2 cut(s) 254, 377
Bso31I GGTCTC 1 cut(s) 563
Bsp119I TTCGAA 1 cut(s) 663
Bsp1286I GDGCHC 2 cut(s) 648, 1134
Bsp143I GATC 5 cut(s) 36, 722, 824, 858, 1066
Bsp1720I GCTNAGC 2 cut(s) 143, 642
BspACI CCGC 5 cut(s) 156, 273, 319, 459, 1064
BspANI GGCC 2 cut(s) 254, 377
BspCNI CTCAG 3 cut(s) 463, 503, 634
BspFNI CGCG 2 cut(s) 321, 459
BspHI TCATGA 1 cut(s) 627
BspLI GGNNCC 3 cut(s) 271, 317, 403
BspMAI CTGCAG 1 cut(s) 991
BspPI GGATC 3 cut(s) 717, 853, 1074
BspT104I TTCGAA 1 cut(s) 663
BspTNI GGTCTC 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 3 cut(s) 184, 276, 405
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 411, 800, 933
BssMI GATC 5 cut(s) 36, 722, 824, 858, 1066
BssNI GRCGYC 1 cut(s) 54
Bst2UI CCWGG 2 cut(s) 486, 801
Bst4CI ACNGT 3 cut(s) 650, 1000, 1111
Bst6I CTCTTC 1 cut(s) 543
BstACI GRCGYC 1 cut(s) 54
BstBI TTCGAA 1 cut(s) 663
BstC8I GCNNGC 2 cut(s) 323, 771
BstDEI CTNAG 5 cut(s) 143, 471, 490, 642, 821
BstF5I GGATG 3 cut(s) 129, 465, 586
BstFNI CGCG 2 cut(s) 321, 459
BstHHI GCGC 1 cut(s) 781
BstKTI GATC 5 cut(s) 39, 725, 827, 861, 1069
BstMAI GTCTC 3 cut(s) 563, 597, 676
BstMBI GATC 5 cut(s) 36, 722, 824, 858, 1066
BstMCI CGRYCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 3 cut(s) 20, 260, 992
BstNI CCWGG 2 cut(s) 486, 801
BstNSI RCATGY 1 cut(s) 1130
BstSCI CCNGG 2 cut(s) 484, 799
BstSFI CTRYAG 1 cut(s) 987
BstUI CGCG 2 cut(s) 321, 459
BstV1I GCAGC 4 cut(s) 753, 973, 979, 1001
BstV2I GAAGAC 2 cut(s) 711, 1059
BstZI CGGCCG 1 cut(s) 252
BsuRI GGCC 2 cut(s) 254, 377
BtsCI GGATG 3 cut(s) 129, 465, 586
BtsI GCAGTG 1 cut(s) 643
BtsIMutI CAGTG 3 cut(s) 498, 643, 646
Cac8I GCNNGC 2 cut(s) 323, 771
CaiI CAGNNNCTG 2 cut(s) 358, 800
CciI TCATGA 1 cut(s) 627
CfoI GCGC 1 cut(s) 781
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 5 cut(s) 170, 181, 284, 316, 1101
Csp6I GTAC 4 cut(s) 115, 544, 553, 620
CspAI ACCGGT 1 cut(s) 167
CviQI GTAC 4 cut(s) 115, 544, 553, 620
DdeI CTNAG 5 cut(s) 143, 471, 490, 642, 821
DpnI GATC 5 cut(s) 38, 724, 826, 860, 1068
DpnII GATC 5 cut(s) 36, 722, 824, 858, 1066
EaeI YGGCCR 1 cut(s) 252
EagI CGGCCG 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 543
EarI CTCTTC 1 cut(s) 543
EciI GGCGGA 2 cut(s) 262, 1079
EclXI CGGCCG 1 cut(s) 252
Eco147I AGGCCT 1 cut(s) 377
Eco31I GGTCTC 1 cut(s) 563
Eco47I GGWCC 5 cut(s) 170, 181, 284, 316, 1101
Eco52I CGGCCG 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 447
EcoRII CCWGG 2 cut(s) 484, 799
EcoT22I ATGCAT 1 cut(s) 439
FaqI GGGAC 1 cut(s) 1137
Fnu4HI GCNGC 6 cut(s) 156, 460, 767, 987, 990, 993
FokI GGATG 3 cut(s) 116, 452, 593
Fsp4HI GCNGC 6 cut(s) 156, 460, 767, 987, 990, 993
FspBI CTAG 3 cut(s) 245, 882, 914
GlaI GCGC 1 cut(s) 780
GluI GCNGC 6 cut(s) 156, 460, 767, 987, 990, 993
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 2 cut(s) 254, 377
HapII CCGG 2 cut(s) 168, 1104
HhaI GCGC 1 cut(s) 781
Hin1I GRCGYC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 779
HinP1I GCGC 1 cut(s) 779
HinfI GANTC 5 cut(s) 338, 454, 475, 502, 563
HpaII CCGG 2 cut(s) 168, 1104
HphI GGTGA 5 cut(s) 430, 454, 581, 809, 1061
Hpy166II GTNNAC 3 cut(s) 115, 213, 817
Hpy188I TCNGA 5 cut(s) 412, 568, 796, 898, 937
Hpy188III TCNNGA 6 cut(s) 179, 335, 628, 749, 856, 871
Hpy8I GTNNAC 3 cut(s) 115, 213, 817
Hpy99I CGWCG 3 cut(s) 56, 59, 221
HpyAV CCTTC 8 cut(s) 91, 92, 183, 247, 439, 602, 659, 670
HpyCH4III ACNGT 3 cut(s) 650, 1000, 1111
HpyCH4IV ACGT 1 cut(s) 54
HpyCH4V TGCA 5 cut(s) 363, 437, 515, 755, 989
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 260, 992
HpyF3I CTNAG 5 cut(s) 143, 471, 490, 642, 821
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 54
HspAI GCGC 1 cut(s) 779
Kzo9I GATC 5 cut(s) 36, 722, 824, 858, 1066
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 4 cut(s) 753, 973, 979, 1001
LweI GCATC 1 cut(s) 742
MaeI CTAG 3 cut(s) 245, 882, 914
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 3 cut(s) 41, 247, 391
MalI GATC 5 cut(s) 38, 724, 826, 860, 1068
MboI GATC 5 cut(s) 36, 722, 824, 858, 1066
MboII GAAGA 7 cut(s) 470, 560, 716, 737, 1040, 1064, 1106
MhlI GDGCHC 2 cut(s) 648, 1134
MluCI AATT 5 cut(s) 92, 364, 381, 851, 957
MlyI GAGTC 1 cut(s) 448
Mph1103I ATGCAT 1 cut(s) 439
MroXI GAANNNNTTC 1 cut(s) 406
MseI TTAA 3 cut(s) 384, 966, 1041
MspA1I CMGCKG 3 cut(s) 158, 986, 992
MspI CCGG 2 cut(s) 168, 1104
MspR9I CCNGG 2 cut(s) 486, 801
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 2 cut(s) 486, 801
MvnI CGCG 2 cut(s) 321, 459
MwoI GCNNNNNNNGC 3 cut(s) 20, 260, 992
NdeII GATC 5 cut(s) 36, 722, 824, 858, 1066
NlaIV GGNNCC 3 cut(s) 271, 317, 403
NmuCI GTSAC 2 cut(s) 247, 391
NsiI ATGCAT 1 cut(s) 439
NspI RCATGY 1 cut(s) 1130
NspV TTCGAA 1 cut(s) 663
PagI TCATGA 1 cut(s) 627
PceI AGGCCT 1 cut(s) 377
PciI ACATGT 1 cut(s) 1126
PctI GAATGC 1 cut(s) 439
PdmI GAANNNNTTC 1 cut(s) 406
PfeI GAWTC 4 cut(s) 338, 475, 502, 563
PflFI GACNNNGTC 1 cut(s) 608
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 6 cut(s) 157, 461, 768, 988, 991, 994
PleI GAGTC 1 cut(s) 448
PpsI GAGTC 1 cut(s) 448
PscI ACATGT 1 cut(s) 1126
Psp6I CCWGG 2 cut(s) 484, 799
PspGI CCWGG 2 cut(s) 484, 799
PspN4I GGNNCC 3 cut(s) 271, 317, 403
PspPI GGNCC 5 cut(s) 170, 181, 284, 316, 1101
PsrI GAACNNNNNNTAC 2 cut(s) 98, 130
PstI CTGCAG 1 cut(s) 991
PstNI CAGNNNCTG 2 cut(s) 358, 800
PsyI GACNNNGTC 1 cut(s) 608
PvuII CAGCTG 2 cut(s) 986, 992
RsaI GTAC 4 cut(s) 116, 545, 554, 621
RsaNI GTAC 4 cut(s) 115, 544, 553, 620
SaqAI TTAA 3 cut(s) 384, 966, 1041
SatI GCNGC 6 cut(s) 156, 460, 767, 987, 990, 993
Sau3AI GATC 5 cut(s) 36, 722, 824, 858, 1066
Sau96I GGNCC 5 cut(s) 170, 181, 284, 316, 1101
ScaI AGTACT 1 cut(s) 554
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 2 cut(s) 486, 801
SduI GDGCHC 2 cut(s) 648, 1134
SfaNI GCATC 1 cut(s) 742
SfcI CTRYAG 1 cut(s) 987
SfuI TTCGAA 1 cut(s) 663
SinI GGWCC 5 cut(s) 170, 181, 284, 316, 1101
SmlI CTYRAG 2 cut(s) 200, 679
SmoI CTYRAG 2 cut(s) 200, 679
Sse9I AATT 5 cut(s) 92, 364, 381, 851, 957
SseBI AGGCCT 1 cut(s) 377
SsiI CCGC 5 cut(s) 156, 273, 319, 459, 1064
SspMI CTAG 3 cut(s) 245, 882, 914
StuI AGGCCT 1 cut(s) 377
StyD4I CCNGG 2 cut(s) 484, 799
TaaI ACNGT 3 cut(s) 650, 1000, 1111
TaiI ACGT 1 cut(s) 57
TaqI TCGA 3 cut(s) 336, 612, 663
TasI AATT 5 cut(s) 92, 364, 381, 851, 957
TatI WGTACW 2 cut(s) 114, 552
TauI GCSGC 2 cut(s) 158, 462
TfiI GAWTC 4 cut(s) 338, 475, 502, 563
Tru1I TTAA 3 cut(s) 384, 966, 1041
Tru9I TTAA 3 cut(s) 384, 966, 1041
TscAI CASTG 3 cut(s) 498, 643, 653
TseFI GTSAC 2 cut(s) 247, 391
TseI GCWGC 4 cut(s) 766, 986, 989, 992
Tsp45I GTSAC 2 cut(s) 247, 391
TspDTI ATGAA 7 cut(s) 177, 454, 576, 616, 984, 1066, 1108
TspRI CASTG 3 cut(s) 498, 643, 653
Tth111I GACNNNGTC 1 cut(s) 608
VpaK11BI GGWCC 5 cut(s) 170, 181, 284, 316, 1101
XapI RAATTY 1 cut(s) 851
XceI RCATGY 1 cut(s) 1130
XmnI GAANNNNTTC 1 cut(s) 406
XspI CTAG 3 cut(s) 245, 882, 914
ZraI GACGTC 1 cut(s) 55
ZrmI AGTACT 1 cut(s) 554
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.