Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004482

Physical Location & Seq

Genomic Coordinates Forward (+)

25125906 .. 25129472

Gene Structure 3567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGGATTCAGTGAGTCGGTCAGCTGTAACTCCAACTAAGAGTAGGCTAGCACGTACTATTGCCAAAGTTCTGCATCTTCGCGCTGCAACAGGTATTGCCCCGGTTGATGGGATTCAGAAAGGTAACTCTCAAGAAATTGGCATTCAGAAGATTAATTACCAAGAAATTGGGATTCAGAAAGCCAAGTCCCACGAAATTGGGATTCAGAAAGTCAAGTCTAAAGAACTTGGAAATCAGAAATTCAAGTCGCAAGAAATTGGAATTCAGAAAGTCCAGGATGATCGGAATGCTCCTAAGGTTCGGGTTACTCTGTCTCAATCATTTGAGAAGAACAACGAGAAGCTACAGGAAAGGGCTGCCTTGGAAGCTCTTCTTGCAAAGCTGTTCGCCAGTATTTCATCTGTTAAAGCTGCTTATGCTCAGCTACAATATGCTCAGACTCCTTATGATGCTGACGGAATTCATGCTGCTGATCATACAGTAGTTGGTGAGTTGAAGAACTTGTCTGAGTTGAAGAGGTGTTTCTTAAAGAAGGAGTTCGATCCTTCGCCGGAGACTACTTTAGTGTTGGCTGAGATTGAGGAACAGAAGAGTGTTCTCAAAACATATGATATTATGGGGAAAAAGTTGGAATCTCAGGTCAGGCTTAAGGACTCTGAAGTAATATTTCTTGGTGAGAAGTTGGAGGAAGCCAATAAACTGAACAAGTTGCTTGAAAAGAGAGTATATCAGAGTGGGCAGCTATATGTGCCTGACAATCTTCATTTATCTGGTTTAAGTCCTAGCCATTTTATTACAGTTCTTCGGCACACGGTCAGGTCCATTCGGAGCTTTGTTAGGGCCATGATGGATGAAATGAAATCTGCTGGTTGGGACATTCATACAGCAGCTAATTCTATCGATGGTGGTGAAGTTGTTTATTGGAAAGAAGACCACAAGTGTTTTGCATTTGAACAATTCGTTTGCAGGGAAATGTTTGATGGTTTCCAATACCCCAACTTCTCACTTCCGAACGAGTTCCTGCCAGAGAAAAAGAAACAGCAGCAACAGCTCTTTTTTGAGAGATTCACGGAACTCAAACCTTGGAAGGCAAAGGAGTATCTTTCCCGGAATCCAAGATCAGCATTTGCCAAATTCTGTCGCGTCAAGTACTTACGACTGATTCATCCCAAGATGGAAGCATCATTTTCTGGCAATCTGAATCAGAGAAACCTTGTGAATGCCGGTGAGTTTCCAAGCACTAATTTCTTTTCTTTATTTGCTGACATGGCAAAGCGGGTCTGGCTCCTGCATTTGTTGGCCTTCTCCTTCGATCCCGAAGCTGCAATCTTCCAAGTGAGCAAGGGGTGTCGATTTTCAGAAGTCTACATGGAAAGTGTGGCGGAGGAAGCGTTCCTTTCAACGGCATCAGAACCACTAGTGGGATTCACAGTTGTTCCCGGATTCAAACTCGGTAAAACTGTCATTCAATGCCAAGTTTACCTCACCTCTCAGTTACAGTCCAATCCAAGAAGGCAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

507

Amino Acids

57.66

Weight (kDa)

9.26

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF641	PF04859	117 - 241	3.1e-45	Plant protein of unknown function (DUF641)
GIL1_IRKI_C	PF24994	443 - 494	5.5e-25	GIL1/IRKI C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53380 AT1G53380 AT1G53380 AT1G53380 AT1G53380 AT3G14870 AT3G14870 AT3G14870 AT3G14870 AT3G14870
fragaria_vesca	FvH4_3g18160 FvH4_3g18160
malus_domestica	MD03G1276500.v1.1 MD11G1265400.v1.1
prunus_persica	Prupe.4G160500_v2.0.a1 Prupe.4G160500_v2.0.a1 Prupe.4G160500_v2.0.a1
pyrus_communis	pycom03g19360 pycom11g23340
rosa_chinensis	RchiOBHm_Chr5g0030591
rosa_laevigata	RLG00000033232
rosa_multiflora	Rmu_sc0003238.1_g000005
rosa_roxburghii	Rroxscaffold_1G00049700
rosa_rugosa	Rorug05G0118600 Rorug05G0118700 Rorug05G0118800 Rorug05G0118900
rosa_samantha	Rh5AG211000 Rh5BG210000 Rh5CG233700 Rh5DG214700
rosa_wichuraiana	Rw5G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1365
AccII	CGCG	2 cut(s)	81, 1143
AciI	CCGC	2 cut(s)	1276, 1382
AclWI	GGATC	2 cut(s)	536, 1307
AcsI	RAATTY	4 cut(s)	239, 261, 459, 1133
AcuI	CTGAAG	1 cut(s)	678
AfaI	GTAC	2 cut(s)	55, 1151
AfiI	CCNNNNNNNGG	3 cut(s)	107, 1402, 1421
AflII	CTTAAG	1 cut(s)	647
AgsI	TTSAA	8 cut(s)	244, 496, 514, 716, 953, 1401, 1447, 1469
AhlI	ACTAGT	1 cut(s)	1417
AjnI	CCWGG	1 cut(s)	273
AloI	GAACNNNNNNTCC	2 cut(s)	1376, 1408
Alw26I	GTCTC	2 cut(s)	318, 548
AlwI	GGATC	2 cut(s)	536, 1307
AoxI	GGCC	2 cut(s)	840, 1299
ApeKI	GCWGC	8 cut(s)	83, 356, 410, 467, 739, 887, 1042, 1322
ApoI	RAATTY	4 cut(s)	239, 261, 459, 1133
AseI	ATTAAT	1 cut(s)	153
Asp700I	GAANNNNTTC	3 cut(s)	369, 536, 1016
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	819, 840
AsuC2I	CCSGG	3 cut(s)	101, 1108, 1440
AsuHPI	GGTGA	5 cut(s)	500, 686, 920, 1238, 1477
AsuNHI	GCTAGC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	819
AxyI	CCTNAGG	1 cut(s)	294
BarI	GAAGNNNNNNTAC	2 cut(s)	140, 172
BbsI	GAAGAC	1 cut(s)	936
BbvI	GCAGC	8 cut(s)	70, 343, 397, 454, 751, 899, 1054, 1309
BccI	CCATC	5 cut(s)	101, 841, 896, 974, 1168
BceAI	ACGGC	1 cut(s)	1419
BciT130I	CCWGG	1 cut(s)	275
BclI	TGATCA	1 cut(s)	472
BcnI	CCSGG	3 cut(s)	101, 1108, 1440
BcoDI	GTCTC	2 cut(s)	318, 548
BcuI	ACTAGT	1 cut(s)	1417
BfaI	CTAG	3 cut(s)	47, 783, 1418
BfmI	CTRYAG	1 cut(s)	344
BfrI	CTTAAG	1 cut(s)	647
BisI	GCNGC	8 cut(s)	84, 357, 411, 468, 740, 888, 1043, 1323
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	8 cut(s)	85, 358, 412, 469, 741, 889, 1044, 1324
BmcAI	AGTACT	1 cut(s)	1151
Bme1390I	CCNGG	4 cut(s)	101, 275, 1108, 1440
Bme18I	GGWCC	1 cut(s)	819
BmgT120I	GGNCC	2 cut(s)	819, 840
BmiI	GGNNCC	1 cut(s)	1286
BmrFI	CCNGG	4 cut(s)	101, 275, 1108, 1440
BmsI	GCATC	4 cut(s)	82, 439, 1190, 1415
BmtI	GCTAGC	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	936
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	114
BpuMI	CCSGG	3 cut(s)	101, 1108, 1440
Bsa29I	ATCGAT	1 cut(s)	900
BsaAI	YACGTR	1 cut(s)	53
BsaJI	CCNNGG	3 cut(s)	99, 360, 1082
BsaXI	ACNNNNNCTCC	2 cut(s)	1376, 1406
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 1402, 1421
Bse118I	RCCGGY	1 cut(s)	1223
Bse1I	ACTGG	1 cut(s)	390
Bse21I	CCTNAGG	1 cut(s)	294
BseBI	CCWGG	1 cut(s)	275
BseCI	ATCGAT	1 cut(s)	900
BseDI	CCNNGG	3 cut(s)	99, 360, 1082
BseGI	GGATG	3 cut(s)	283, 856, 1165
BseLI	CCNNNNNNNGG	3 cut(s)	107, 1402, 1421
BseMII	CTCAG	6 cut(s)	434, 449, 498, 564, 650, 1505
BseNI	ACTGG	1 cut(s)	390
BseXI	GCAGC	8 cut(s)	70, 343, 397, 454, 751, 899, 1054, 1309
Bsh1236I	CGCG	2 cut(s)	81, 1143
BshFI	GGCC	2 cut(s)	842, 1301
BshVI	ATCGAT	1 cut(s)	900
BsiSI	CCGG	5 cut(s)	101, 551, 1108, 1224, 1440
BslFI	GGGAC	2 cut(s)	172, 887
BslI	CCNNNNNNNGG	3 cut(s)	107, 1402, 1421
BsmAI	GTCTC	2 cut(s)	318, 548
BsmFI	GGGAC	2 cut(s)	172, 887
BsmI	GAATGC	3 cut(s)	141, 292, 1225
BsnI	GGCC	2 cut(s)	842, 1301
Bsp143I	GATC	5 cut(s)	280, 472, 541, 1118, 1312
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	2 cut(s)	1276, 1382
BspANI	GGCC	2 cut(s)	842, 1301
BspCNI	CTCAG	6 cut(s)	433, 448, 499, 565, 649, 1504
BspDI	ATCGAT	1 cut(s)	900
BspFNI	CGCG	2 cut(s)	81, 1143
BspLI	GGNNCC	1 cut(s)	1286
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	536, 1307
BspQI	GCTCTTC	1 cut(s)	375
BspTI	CTTAAG	1 cut(s)	647
BsrFI	RCCGGY	1 cut(s)	1223
BsrI	ACTGG	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	1223
BssECI	CCNNGG	3 cut(s)	99, 360, 1082
BssMI	GATC	5 cut(s)	280, 472, 541, 1118, 1312
BssT1I	CCWWGG	2 cut(s)	360, 1082
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	6 cut(s)	481, 799, 814, 1432, 1462, 1500
Bst6I	CTCTTC	3 cut(s)	375, 509, 584
BstAFI	CTTAAG	1 cut(s)	647
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	8 cut(s)	36, 294, 420, 435, 507, 573, 636, 1491
BstF5I	GGATG	3 cut(s)	283, 856, 1165
BstFNI	CGCG	2 cut(s)	81, 1143
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	5 cut(s)	283, 475, 544, 1121, 1315
BstMAI	GTCTC	2 cut(s)	318, 548
BstMBI	GATC	5 cut(s)	280, 472, 541, 1118, 1312
BstMWI	GCNNNNNNNGC	8 cut(s)	365, 374, 416, 748, 1048, 1268, 1282, 1388
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	4 cut(s)	99, 273, 1106, 1438
BstSFI	CTRYAG	1 cut(s)	344
BstUI	CGCG	2 cut(s)	81, 1143
BstV1I	GCAGC	8 cut(s)	70, 343, 397, 454, 751, 899, 1054, 1309
BstV2I	GAAGAC	1 cut(s)	936
BstXI	CCANNNNNNTGG	2 cut(s)	167, 197
Bsu15I	ATCGAT	1 cut(s)	900
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	842, 1301
BsuTUI	ATCGAT	1 cut(s)	900
BtsCI	GGATG	3 cut(s)	283, 856, 1165
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	83
Cfr10I	RCCGGY	1 cut(s)	1223
Cfr13I	GGNCC	2 cut(s)	819, 840
ClaI	ATCGAT	1 cut(s)	900
CseI	GACGC	1 cut(s)	1132
Csp6I	GTAC	2 cut(s)	54, 1150
CviAII	CATG	4 cut(s)	464, 844, 1267, 1369
CviQI	GTAC	2 cut(s)	54, 1150
DdeI	CTNAG	8 cut(s)	36, 294, 420, 435, 507, 573, 636, 1491
DpnI	GATC	5 cut(s)	282, 474, 543, 1120, 1314
DpnII	GATC	5 cut(s)	280, 472, 541, 1118, 1312
Eam1104I	CTCTTC	3 cut(s)	375, 509, 584
EarI	CTCTTC	3 cut(s)	375, 509, 584
EciI	GGCGGA	1 cut(s)	1397
Eco130I	CCWWGG	2 cut(s)	360, 1082
Eco47I	GGWCC	1 cut(s)	819
Eco57I	CTGAAG	1 cut(s)	678
Eco81I	CCTNAGG	1 cut(s)	294
EcoRI	GAATTC	2 cut(s)	261, 459
EcoRII	CCWGG	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	360, 1082
ErhI	CCWWGG	2 cut(s)	360, 1082
FaeI	CATG	4 cut(s)	467, 847, 1270, 1372
FalI	AAGNNNNNCTT	4 cut(s)	357, 389, 1380, 1412
FaqI	GGGAC	2 cut(s)	172, 887
FatI	CATG	4 cut(s)	463, 843, 1266, 1368
FauI	CCCGC	1 cut(s)	1269
FauNDI	CATATG	1 cut(s)	607
FbaI	TGATCA	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	1365
Fnu4HI	GCNGC	8 cut(s)	84, 357, 411, 468, 740, 888, 1043, 1323
FokI	GGATG	3 cut(s)	290, 863, 1152
Fsp4HI	GCNGC	8 cut(s)	84, 357, 411, 468, 740, 888, 1043, 1323
FspBI	CTAG	3 cut(s)	47, 783, 1418
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	8 cut(s)	84, 357, 411, 468, 740, 888, 1043, 1323
HaeIII	GGCC	2 cut(s)	842, 1301
HapII	CCGG	5 cut(s)	101, 551, 1108, 1224, 1440
HgaI	GACGC	1 cut(s)	1132
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	467, 847, 1270, 1372
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HpaII	CCGG	5 cut(s)	101, 551, 1108, 1224, 1440
HphI	GGTGA	5 cut(s)	500, 686, 920, 1238, 1477
Hpy166II	GTNNAC	2 cut(s)	1366, 1480
Hpy188III	TCNNGA	2 cut(s)	131, 1316
Hpy8I	GTNNAC	2 cut(s)	1366, 1480
HpyAV	CCTTC	6 cut(s)	526, 555, 1081, 1312, 1318, 1506
HpyCH4III	ACNGT	6 cut(s)	481, 799, 814, 1432, 1462, 1500
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	7 cut(s)	73, 86, 377, 947, 966, 1291, 1325
HpyF10VI	GCNNNNNNNGC	8 cut(s)	365, 374, 416, 748, 1048, 1268, 1282, 1388
HpyF3I	CTNAG	8 cut(s)	36, 294, 420, 435, 507, 573, 636, 1491
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	4 cut(s)	467, 847, 1270, 1372
HspAI	GCGC	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	472
Kzo9I	GATC	5 cut(s)	280, 472, 541, 1118, 1312
LguI	GCTCTTC	1 cut(s)	375
LmnI	GCTCC	3 cut(s)	295, 828, 1290
Lsp1109I	GCAGC	8 cut(s)	70, 343, 397, 454, 751, 899, 1054, 1309
LweI	GCATC	4 cut(s)	82, 439, 1190, 1415
MaeI	CTAG	3 cut(s)	47, 783, 1418
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	4 cut(s)	25, 122, 304, 1494
MalI	GATC	5 cut(s)	282, 474, 543, 1120, 1314
MboI	GATC	5 cut(s)	280, 472, 541, 1118, 1312
MlyI	GAGTC	3 cut(s)	22, 433, 647
MmeI	TCCRAC	3 cut(s)	56, 609, 663
MnlI	CCTC	6 cut(s)	510, 574, 679, 1378, 1493, 1498
MroXI	GAANNNNTTC	3 cut(s)	369, 536, 1016
MseI	TTAA	5 cut(s)	153, 405, 527, 648, 776
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	647
MspI	CCGG	5 cut(s)	101, 551, 1108, 1224, 1440
MspR9I	CCNGG	4 cut(s)	101, 275, 1108, 1440
Mva1269I	GAATGC	3 cut(s)	141, 292, 1225
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	2 cut(s)	81, 1143
MwoI	GCNNNNNNNGC	8 cut(s)	365, 374, 416, 748, 1048, 1268, 1282, 1388
NciI	CCSGG	3 cut(s)	101, 1108, 1440
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	5 cut(s)	280, 472, 541, 1118, 1312
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	4 cut(s)	467, 847, 1270, 1372
NlaIV	GGNNCC	1 cut(s)	1286
PciSI	GCTCTTC	1 cut(s)	375
PctI	GAATGC	3 cut(s)	141, 292, 1225
PdmI	GAANNNNTTC	3 cut(s)	369, 536, 1016
PfoI	TCCNGGA	3 cut(s)	273, 1106, 1438
PkrI	GCNGC	8 cut(s)	85, 358, 412, 469, 741, 889, 1044, 1324
PleI	GAGTC	3 cut(s)	21, 433, 647
PpsI	GAGTC	3 cut(s)	21, 433, 647
Ppu21I	YACGTR	1 cut(s)	53
PshBI	ATTAAT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	1286
PspPI	GGNCC	2 cut(s)	819, 840
PvuII	CAGCTG	1 cut(s)	23
RsaI	GTAC	2 cut(s)	55, 1151
RsaNI	GTAC	2 cut(s)	54, 1150
SapI	GCTCTTC	1 cut(s)	375
SaqAI	TTAA	5 cut(s)	153, 405, 527, 648, 776
SatI	GCNGC	8 cut(s)	84, 357, 411, 468, 740, 888, 1043, 1323
Sau3AI	GATC	5 cut(s)	280, 472, 541, 1118, 1312
Sau96I	GGNCC	2 cut(s)	819, 840
ScaI	AGTACT	1 cut(s)	1151
SchI	GAGTC	3 cut(s)	22, 433, 647
ScrFI	CCNGG	4 cut(s)	101, 275, 1108, 1440
SfaNI	GCATC	4 cut(s)	82, 439, 1190, 1415
SfcI	CTRYAG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	819
SmlI	CTYRAG	2 cut(s)	129, 647
SmoI	CTYRAG	2 cut(s)	129, 647
SpeI	ACTAGT	1 cut(s)	1417
SsiI	CCGC	2 cut(s)	1276, 1382
SspI	AATATT	1 cut(s)	666
SspMI	CTAG	3 cut(s)	47, 783, 1418
StyD4I	CCNGG	4 cut(s)	99, 273, 1106, 1438
StyI	CCWWGG	2 cut(s)	360, 1082
TaaI	ACNGT	6 cut(s)	481, 799, 814, 1432, 1462, 1500
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	4 cut(s)	540, 900, 1311, 1351
TaqII	GACCGA	1 cut(s)	6
TatI	WGTACW	1 cut(s)	1149
Tru1I	TTAA	5 cut(s)	153, 405, 527, 648, 776
Tru9I	TTAA	5 cut(s)	153, 405, 527, 648, 776
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	8 cut(s)	83, 356, 410, 467, 739, 887, 1042, 1322
TspDTI	ATGAA	7 cut(s)	387, 452, 752, 867, 869, 872, 1154
TspGWI	ACGGA	2 cut(s)	471, 1085
TspRI	CASTG	1 cut(s)	15
Vha464I	CTTAAG	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	819
VspI	ATTAAT	1 cut(s)	153
XapI	RAATTY	4 cut(s)	239, 261, 459, 1133
XmiI	GTMKAC	1 cut(s)	1365
XmnI	GAANNNNTTC	3 cut(s)	369, 536, 1016
XspI	CTAG	3 cut(s)	47, 783, 1418
ZrmI	AGTACT	1 cut(s)	1151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.