Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004482

Physical Location & Seq

Genomic Coordinates Reverse (-)

35895573 .. 35896991

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1276500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGGATTCGGTGAGACCATCCGCCGTGACCCCAAATAAGAGAAGATGGGCACGTACTATTGCTAAAGTTCTTCATCTTCAGGCCGCAACGGGTATTGCCCCTGTCGATGGGGTTCAGAAGGTTAAGTCCCAAGAAGTCAAAGTTCAGAAGGTAAACTACCAAGAAAGTGGAGTTCAGAAGGTGAAGTCTCAAGAAAATGGAATTCAGAAAGTCAAGTCCCAAGAAAAGGTCAAGGAGCTCCAGGAAAGAGTCGCCTTGGAGGCTCATCTAGCGAAACTGTTTGCAAGCGTTTCATCTGTTAAAGCTGCGTATGCACAACTGCAGCATGCTCAGTCTCCCTATGATGCTGAAGGAATCCAAGCTGCTGACAAAGAGGTAGTCTCCGAAATGAAGAACTTGTCTGAGTTGAAGCGTTGTTTCTTGAACAAACAGTTCGATCCTAAACCTGAGACTACCCTGGTTTTGGCGGAGATCGAGGAGCAGAAGAATGATCTAAAAACCTATAAAATCATGGGGAAAAAGTTGGAATCTCAGGTGAGGCTGAAGGACTCTGAAATTGTATTTCTCGGAGAAAAGTTAGAGGAGGCCAAGGATCATAATAAGTTGCTTGAGAAGAGATTAAACCAGAACCAGAGCGGGCAGCTACATGTGCTCGACAATCTTCATTTATCTGCTTTAAGTCCCAGCCATTTCATCACGGTTCTTCGACACACGGTAAAGTCCATCCGGAGCTTTGTTAGGATGATGGTGGATGATATGAAATCTGCCGGTTGGGACATTCATGCAGCAGCTAAAGCGATTGACCGCGATGTGCTTTATCGGAAAGAAGACCACAAGTGCTTTGCATTTGAACACTCTGTTTGCAAGGAAATGTTTGATGCTTTCCAGTACCCCAACTTCTCGCTTCCAAATGAGTCCTTGCCGGAGAAAAAGAAACAACAGCAGCAGCTCTTTTTTGTGAGATTCACGGAACTCAAATCGATGAAGCCGAAGGACTATCTCGCCCAGAATCCCCGATCAGCATTTGCCAAGTTCTGCCGTGTCAAGTACTTACGACTGGTTCATCCCAAGATGGAAACATCATTCTTCGGCAATCTGAATCAAAGAAACCTCATCAATGCAGGTGAGTTTCCGAGCTCTGATTTCTTTGCTTCATTTGCTGAAATGGCAAAGCGTGTCTGGCTCCTGCATTGCTTGGCCTTCTCCTTCGATCCTGAAGCCGCAATCTTTCAAGTAAGCAAGGGATGTCGATTTTCAGAAGTGTACATGGACAGCTTGGACGACGAAGGGTTCCTCTCAACAGCATCCGAACCACAAGTGGGATTCACAGTTGTTCCGGGATTCAGACTCGGTAAAACTGTCATTCAGTGCCAAGTATACCTCACTCGGTTACAATCCACTCCGAGAAAGCGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

473

Amino Acids

53.97

Weight (kDa)

9.37

Isoelectric Point (pI)

45.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF641	PF04859	83 - 206	3.3e-43	Plant protein of unknown function (DUF641)
GIL1_IRKI_C	PF24994	409 - 460	6.3e-23	GIL1/IRKI C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53380 AT1G53380 AT1G53380 AT1G53380 AT1G53380 AT3G14870 AT3G14870 AT3G14870 AT3G14870 AT3G14870
fragaria_vesca	FvH4_3g18160 FvH4_3g18160
malus_domestica	MD03G1276500.v1.1 MD11G1265400.v1.1
prunus_persica	Prupe.4G160500_v2.0.a1 Prupe.4G160500_v2.0.a1 Prupe.4G160500_v2.0.a1
pyrus_communis	pycom03g19360 pycom11g23340
rosa_chinensis	RchiOBHm_Chr5g0030591
rosa_laevigata	RLG00000033232
rosa_multiflora	Rmu_sc0003238.1_g000005
rosa_roxburghii	Rroxscaffold_1G00049700
rosa_rugosa	Rorug05G0118600 Rorug05G0118700 Rorug05G0118800 Rorug05G0118900
rosa_samantha	Rh5AG211000 Rh5BG210000 Rh5CG233700 Rh5DG214700
rosa_wichuraiana	Rw5G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1112
Acc36I	ACCTGC	1 cut(s)	1112
AccBSI	CCGCTC	1 cut(s)	636
AccI	GTMKAC	1 cut(s)	1377
AccII	CGCG	1 cut(s)	807
AccIII	TCCGGA	1 cut(s)	726
AciI	CCGC	6 cut(s)	21, 84, 467, 636, 805, 1221
AclWI	GGATC	3 cut(s)	431, 600, 1205
AcsI	RAATTY	1 cut(s)	201
AcuI	CTGAAG	4 cut(s)	62, 369, 563, 1236
AfaI	GTAC	4 cut(s)	55, 890, 1049, 1265
AfiI	CCNNNNNNNGG	4 cut(s)	107, 226, 463, 1319
AflIII	ACRYGT	1 cut(s)	646
AgsI	TTSAA	4 cut(s)	409, 424, 851, 1232
AjnI	CCWGG	2 cut(s)	240, 456
AluBI	AGCT	9 cut(s)	238, 305, 362, 643, 732, 791, 949, 1137, 1275
AluI	AGCT	9 cut(s)	238, 305, 362, 643, 732, 791, 949, 1137, 1275
Alw21I	GWGCWC	3 cut(s)	240, 654, 1139
Alw26I	GTCTC	5 cut(s)	7, 192, 339, 385, 443
AlwI	GGATC	3 cut(s)	431, 600, 1205
Aor13HI	TCCGGA	1 cut(s)	726
AoxI	GGCC	3 cut(s)	81, 585, 1197
ApeKI	GCWGC	8 cut(s)	305, 322, 362, 640, 785, 788, 943, 946
ApoI	RAATTY	1 cut(s)	201
ArsI	GACNNNNNNTTYG	2 cut(s)	363, 395
AsuC2I	CCSGG	1 cut(s)	1338
AsuHPI	GGTGA	4 cut(s)	22, 193, 547, 1136
BaeGI	GKGCMC	1 cut(s)	52
BanII	GRGCYC	2 cut(s)	240, 1139
BarI	GAAGNNNNNNTAC	4 cut(s)	140, 172, 881, 913
BbsI	GAAGAC	1 cut(s)	834
Bbv12I	GWGCWC	3 cut(s)	240, 654, 1139
BbvI	GCAGC	8 cut(s)	292, 334, 349, 652, 797, 800, 955, 958
BccI	CCATC	6 cut(s)	25, 39, 101, 731, 739, 1066
BceAI	ACGGC	2 cut(s)	8, 1023
BciT130I	CCWGG	2 cut(s)	242, 458
BcnI	CCSGG	1 cut(s)	1338
BcoDI	GTCTC	5 cut(s)	7, 192, 339, 385, 443
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	1112
BglI	GCCNNNNNGGC	1 cut(s)	260
BmcAI	AGTACT	1 cut(s)	1049
Bme1390I	CCNGG	3 cut(s)	242, 458, 1338
BmiI	GGNNCC	2 cut(s)	1184, 1292
BmrFI	CCNGG	3 cut(s)	242, 458, 1338
BmsI	GCATC	3 cut(s)	334, 868, 1313
BpiI	GAAGAC	1 cut(s)	834
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpmI	CTGGAG	1 cut(s)	224
BpuEI	CTTGAG	2 cut(s)	174, 629
BpuMI	CCSGG	1 cut(s)	1338
Bsa29I	ATCGAT	1 cut(s)	980
BsaAI	YACGTR	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	3 cut(s)	255, 456, 588
BsaWI	WCCGGW	1 cut(s)	726
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 226, 463, 1319
Bse118I	RCCGGY	1 cut(s)	767
Bse1I	ACTGG	2 cut(s)	886, 1062
Bse3DI	GCAATG	1 cut(s)	1189
BseAI	TCCGGA	1 cut(s)	726
BseBI	CCWGG	2 cut(s)	242, 458
BseCI	ATCGAT	1 cut(s)	980
BseDI	CCNNGG	3 cut(s)	255, 456, 588
BseGI	GGATG	7 cut(s)	17, 723, 747, 757, 1063, 1250, 1304
BseLI	CCNNNNNNNGG	4 cut(s)	107, 226, 463, 1319
BseMI	GCAATG	1 cut(s)	1189
BseMII	CTCAG	4 cut(s)	344, 393, 438, 545
BseNI	ACTGG	2 cut(s)	886, 1062
BseRI	GAGGAG	2 cut(s)	491, 596
BseSI	GKGCMC	1 cut(s)	52
BseXI	GCAGC	8 cut(s)	292, 334, 349, 652, 797, 800, 955, 958
BseYI	CCCAGC	1 cut(s)	683
Bsh1236I	CGCG	1 cut(s)	807
BshFI	GGCC	3 cut(s)	83, 587, 1199
BshVI	ATCGAT	1 cut(s)	980
BsiHKAI	GWGCWC	3 cut(s)	240, 654, 1139
BsiSI	CCGG	4 cut(s)	727, 768, 923, 1337
BslFI	GGGAC	4 cut(s)	112, 202, 666, 788
BslI	CCNNNNNNNGG	4 cut(s)	107, 226, 463, 1319
BsmAI	GTCTC	5 cut(s)	7, 192, 339, 385, 443
BsmFI	GGGAC	4 cut(s)	112, 202, 666, 788
BsnI	GGCC	3 cut(s)	83, 587, 1199
Bso31I	GGTCTC	1 cut(s)	7
Bsp1286I	GDGCHC	4 cut(s)	52, 240, 654, 1139
Bsp13I	TCCGGA	1 cut(s)	726
Bsp1407I	TGTACA	1 cut(s)	1263
Bsp143I	GATC	6 cut(s)	436, 471, 490, 592, 1016, 1210
BspACI	CCGC	6 cut(s)	21, 84, 467, 636, 805, 1221
BspANI	GGCC	3 cut(s)	83, 587, 1199
BspCNI	CTCAG	4 cut(s)	343, 394, 439, 544
BspDI	ATCGAT	1 cut(s)	980
BspEI	TCCGGA	1 cut(s)	726
BspFNI	CGCG	1 cut(s)	807
BspLI	GGNNCC	2 cut(s)	1184, 1292
BspMAI	CTGCAG	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	1112
BspPI	GGATC	3 cut(s)	431, 600, 1205
BspTNI	GGTCTC	1 cut(s)	7
BsrBI	CCGCTC	1 cut(s)	636
BsrDI	GCAATG	1 cut(s)	1189
BsrFI	RCCGGY	1 cut(s)	767
BsrGI	TGTACA	1 cut(s)	1263
BsrI	ACTGG	2 cut(s)	886, 1062
BssAI	RCCGGY	1 cut(s)	767
BssECI	CCNNGG	3 cut(s)	255, 456, 588
BssMI	GATC	6 cut(s)	436, 471, 490, 592, 1016, 1210
BssNAI	GTATAC	1 cut(s)	1378
BssT1I	CCWWGG	2 cut(s)	255, 588
Bst1107I	GTATAC	1 cut(s)	1378
Bst2UI	CCWGG	2 cut(s)	242, 458
Bst4CI	ACNGT	6 cut(s)	279, 432, 700, 715, 1330, 1360
Bst6I	CTCTTC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	1263
BstBAI	YACGTR	1 cut(s)	53
BstC8I	GCNNGC	3 cut(s)	286, 327, 638
BstDEI	CTNAG	4 cut(s)	330, 402, 447, 531
BstF5I	GGATG	7 cut(s)	17, 723, 747, 757, 1063, 1250, 1304
BstFNI	CGCG	1 cut(s)	807
BstKTI	GATC	6 cut(s)	439, 474, 493, 595, 1019, 1213
BstMAI	GTCTC	5 cut(s)	7, 192, 339, 385, 443
BstMBI	GATC	6 cut(s)	436, 471, 490, 592, 1016, 1210
BstMWI	GCNNNNNNNGC	8 cut(s)	260, 269, 311, 649, 794, 1157, 1166, 1180
BstNI	CCWGG	2 cut(s)	242, 458
BstNSI	RCATGY	2 cut(s)	329, 650
BstSCI	CCNGG	3 cut(s)	240, 456, 1336
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	52
BstUI	CGCG	1 cut(s)	807
BstV1I	GCAGC	8 cut(s)	292, 334, 349, 652, 797, 800, 955, 958
BstV2I	GAAGAC	1 cut(s)	834
BstXI	CCANNNNNNTGG	1 cut(s)	167
BstZ17I	GTATAC	1 cut(s)	1378
Bsu15I	ATCGAT	1 cut(s)	980
BsuRI	GGCC	3 cut(s)	83, 587, 1199
BsuTUI	ATCGAT	1 cut(s)	980
BtgZI	GCGATG	1 cut(s)	822
BtsCI	GGATG	7 cut(s)	17, 723, 747, 757, 1063, 1250, 1304
BtsIMutI	CAGTG	1 cut(s)	1373
BveI	ACCTGC	1 cut(s)	1112
Cac8I	GCNNGC	3 cut(s)	286, 327, 638
Cfr10I	RCCGGY	1 cut(s)	767
ClaI	ATCGAT	1 cut(s)	980
Csp6I	GTAC	4 cut(s)	54, 889, 1048, 1264
CviAII	CATG	5 cut(s)	326, 511, 647, 782, 1267
CviQI	GTAC	4 cut(s)	54, 889, 1048, 1264
DdeI	CTNAG	4 cut(s)	330, 402, 447, 531
DpnI	GATC	6 cut(s)	438, 473, 492, 594, 1018, 1212
DpnII	GATC	6 cut(s)	436, 471, 490, 592, 1016, 1210
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
EciI	GGCGGA	2 cut(s)	10, 482
Ecl136II	GAGCTC	2 cut(s)	238, 1137
Eco130I	CCWWGG	2 cut(s)	255, 588
Eco24I	GRGCYC	2 cut(s)	240, 1139
Eco31I	GGTCTC	1 cut(s)	7
Eco53kI	GAGCTC	2 cut(s)	238, 1137
Eco57I	CTGAAG	4 cut(s)	62, 369, 563, 1236
EcoICRI	GAGCTC	2 cut(s)	238, 1137
EcoRI	GAATTC	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	240, 456
EcoT14I	CCWWGG	2 cut(s)	255, 588
EcoT38I	GRGCYC	2 cut(s)	240, 1139
ErhI	CCWWGG	2 cut(s)	255, 588
FaeI	CATG	5 cut(s)	329, 514, 650, 785, 1270
FaqI	GGGAC	4 cut(s)	112, 202, 666, 788
FatI	CATG	5 cut(s)	325, 510, 646, 781, 1266
FauI	CCCGC	1 cut(s)	629
FblI	GTMKAC	1 cut(s)	1377
FokI	GGATG	7 cut(s)	4, 710, 754, 764, 1050, 1257, 1291
FriOI	GRGCYC	2 cut(s)	240, 1139
FspBI	CTAG	1 cut(s)	269
GsaI	CCCAGC	1 cut(s)	687
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	3 cut(s)	83, 587, 1199
HapII	CCGG	4 cut(s)	727, 768, 923, 1337
Hin1II	CATG	5 cut(s)	329, 514, 650, 785, 1270
HpaII	CCGG	4 cut(s)	727, 768, 923, 1337
HphI	GGTGA	4 cut(s)	22, 193, 547, 1136
Hpy166II	GTNNAC	3 cut(s)	154, 1264, 1378
Hpy188III	TCNNGA	4 cut(s)	191, 421, 727, 1214
Hpy8I	GTNNAC	3 cut(s)	154, 1264, 1378
Hpy99I	CGWCG	1 cut(s)	1286
HpyCH4III	ACNGT	6 cut(s)	279, 432, 700, 715, 1330, 1360
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	8 cut(s)	284, 314, 322, 785, 845, 864, 1121, 1189
HpyF10VI	GCNNNNNNNGC	8 cut(s)	260, 269, 311, 649, 794, 1157, 1166, 1180
HpyF3I	CTNAG	4 cut(s)	330, 402, 447, 531
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	5 cut(s)	329, 514, 650, 785, 1270
Kpn2I	TCCGGA	1 cut(s)	726
Kzo9I	GATC	6 cut(s)	436, 471, 490, 592, 1016, 1210
LmnI	GCTCC	5 cut(s)	235, 243, 478, 729, 1188
Lsp1109I	GCAGC	8 cut(s)	292, 334, 349, 652, 797, 800, 955, 958
LweI	GCATC	3 cut(s)	334, 868, 1313
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	52
MaeIII	GTNAC	2 cut(s)	25, 1389
MalI	GATC	6 cut(s)	438, 473, 492, 594, 1018, 1212
MbiI	CCGCTC	1 cut(s)	636
MboI	GATC	6 cut(s)	436, 471, 490, 592, 1016, 1210
MhlI	GDGCHC	4 cut(s)	52, 240, 654, 1139
MluCI	AATT	2 cut(s)	201, 555
MlyI	GAGTC	4 cut(s)	258, 542, 923, 1341
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	9 cut(s)	253, 367, 469, 531, 574, 577, 1121, 1304, 1391
MroI	TCCGGA	1 cut(s)	726
MseI	TTAA	4 cut(s)	123, 300, 620, 677
MspI	CCGG	4 cut(s)	727, 768, 923, 1337
MspR9I	CCNGG	3 cut(s)	242, 458, 1338
MvaI	CCWGG	2 cut(s)	242, 458
MvnI	CGCG	1 cut(s)	807
MwoI	GCNNNNNNNGC	8 cut(s)	260, 269, 311, 649, 794, 1157, 1166, 1180
NciI	CCSGG	1 cut(s)	1338
NdeII	GATC	6 cut(s)	436, 471, 490, 592, 1016, 1210
NlaIII	CATG	5 cut(s)	329, 514, 650, 785, 1270
NlaIV	GGNNCC	2 cut(s)	1184, 1292
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	2 cut(s)	329, 650
PaeI	GCATGC	1 cut(s)	329
PaqCI	CACCTGC	1 cut(s)	1112
PciI	ACATGT	1 cut(s)	646
PcsI	WCGNNNNNNNCGW	1 cut(s)	986
PfeI	GAWTC	8 cut(s)	5, 354, 527, 963, 1009, 1099, 1323, 1341
PfoI	TCCNGGA	2 cut(s)	240, 1336
PleI	GAGTC	4 cut(s)	257, 542, 922, 1341
PpsI	GAGTC	4 cut(s)	257, 542, 922, 1341
Ppu21I	YACGTR	1 cut(s)	53
PscI	ACATGT	1 cut(s)	646
Psp124BI	GAGCTC	2 cut(s)	240, 1139
Psp6I	CCWGG	2 cut(s)	240, 456
PspFI	CCCAGC	1 cut(s)	683
PspGI	CCWGG	2 cut(s)	240, 456
PspN4I	GGNNCC	2 cut(s)	1184, 1292
PstI	CTGCAG	1 cut(s)	324
RsaI	GTAC	4 cut(s)	55, 890, 1049, 1265
RsaNI	GTAC	4 cut(s)	54, 889, 1048, 1264
SacI	GAGCTC	2 cut(s)	240, 1139
SaqAI	TTAA	4 cut(s)	123, 300, 620, 677
Sau3AI	GATC	6 cut(s)	436, 471, 490, 592, 1016, 1210
ScaI	AGTACT	1 cut(s)	1049
SchI	GAGTC	4 cut(s)	258, 542, 923, 1341
ScrFI	CCNGG	3 cut(s)	242, 458, 1338
SduI	GDGCHC	4 cut(s)	52, 240, 654, 1139
SfaNI	GCATC	3 cut(s)	334, 868, 1313
SfcI	CTRYAG	1 cut(s)	320
SmlI	CTYRAG	2 cut(s)	189, 608
SmoI	CTYRAG	2 cut(s)	189, 608
SphI	GCATGC	1 cut(s)	329
Sse9I	AATT	2 cut(s)	201, 555
SsiI	CCGC	6 cut(s)	21, 84, 467, 636, 805, 1221
SspMI	CTAG	1 cut(s)	269
SstI	GAGCTC	2 cut(s)	240, 1139
StyD4I	CCNGG	3 cut(s)	240, 456, 1336
StyI	CCWWGG	2 cut(s)	255, 588
TaaI	ACNGT	6 cut(s)	279, 432, 700, 715, 1330, 1360
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	8 cut(s)	105, 435, 474, 654, 706, 980, 1209, 1249
TasI	AATT	2 cut(s)	201, 555
TatI	WGTACW	2 cut(s)	1047, 1263
TauI	GCSGC	2 cut(s)	86, 1223
TfiI	GAWTC	8 cut(s)	5, 354, 527, 963, 1009, 1099, 1323, 1341
Tru1I	TTAA	4 cut(s)	123, 300, 620, 677
Tru9I	TTAA	4 cut(s)	123, 300, 620, 677
TscAI	CASTG	1 cut(s)	1373
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	8 cut(s)	305, 322, 362, 640, 785, 788, 943, 946
Tsp45I	GTSAC	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	983
TspRI	CASTG	1 cut(s)	1373
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	2 cut(s)	329, 650
XmiI	GTMKAC	1 cut(s)	1377
XspI	CTAG	1 cut(s)	269
ZrmI	AGTACT	1 cut(s)	1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.