Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004482

Physical Location & Seq

Genomic Coordinates Forward (+)

24214273 .. 24219404

Gene Structure 5132 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGTGTTTGATGGATTCAGTGAGTCGGTCAGCTGTAACTCCAACTAAGAGTAGGCTAGCACGTACTATTGCCAAAGTTCTGCATCTTCGCGGTGCAACAGGTATTGCCCCGGTTGATGGGATTCAGAAAGGTAACTCTCAAGAAATTGGCATTCAGAAGATTAATTACCAAGAAATTGGGATTCAGAAAGCCAAGTCCCAAGAAATTGGGATTCAGAAAGTCAAGTCTAAAGAACTTGGAAATCAGAAATTCAAGTCGCAAGAAATTGGAATTCAGAAAGTCCAGGATGATCGGAATGCTCCTAAGGTTCGGGTTACTCTGTCTCAATCATTTGAGAAGAACAACGAGAAGCTACAGGAAAGGGCTGCCTTGGAAGCTCTTCTTGCAAAGCTGTTCGCCAGCATTTCATCTGTTAAAGCTGCTTATGCTCAGCTACAATATGCTCAGACTCCTTATGATGCTGACGGAATTCGTGCTGCTGATCATACAGTAGTTGACGGGTTGAAGAACTTGTCTGAGTTGAAGAGGTGTTTCTTAAAGAAGGAGTTCGATCCTTCGCCAGAGACTACTTTAGTGTTGGCTGAGATTGAGGAACAGAAGAGTGTTCTCAAAACATATGATATTATGGGGAAAAAGTTGGAATCTCAGGTCAGGCTTAAGGACTCTGAAGTAATATTTCTTGGTGAGAAGTTGGAGGAAGCCAATAAACTGAACAAGTTGCTTGAAAAGAGAGTATATCAGAGTGGGCAGCTATATGTGCCTGACAATCTTCATTTATCTGGTTTAAGTCCTAGCCATTTTATTACAGTTCTTCGGCACACAGTCAGGTCCATTCGGAGCTTTGTTAGGGCGATGATGGATGAAATGAAATCTGCTGGTTGGGACATTCATACAGCAGCTAATTCTATCGATGGTGGTGAAGTTGTTTATTGGAAAGAAGACCACAAGTGTTTTGCATTTGAACAATTCGTTTGCAGGGAAATGTTTGATGGTTTCCAATACCCCAACTTCTCACTTCCAAACGAGTTCCTGCCAGAGAAAAAGAAACAGCAGCAACAGCTCTTTTTTGAGAGATTCACGGAACTCAAACCTTGGAAGGCAAAGGAGTATCTTTCCCGGAATCCAAGATCAGCATTTGCCAAATTCTGTCGCGCCAAGTACTTACGACTGATTCATCCCAAGATGGAAGCATCATTTTCTGGCAATCTGAATCAGAGAAACCTTGTGAATGCCGGTGAGTTTCCAAGCACTAATTTCTTTTCTTTATTTGCTGACATGGCAAAGCGGGTCTGGCTCCTGCATTTGTTGGCCTTCTCCTTCGATCCCGAAGCTGCAATCTTCCAAGTGAGCAAGGGGTGTCGATTTTCAGAAGTCTACATGGAAAGTGTGGCGGAGGAAGCGTTCCTTTCAACGGCATCAGAACCGCTAGTGGGATTCACAGTTGTTCCCGGATTCAAACTCGGTAAAACTGTCATTCAATGCCAAGTTTACCTCACCTCTCAGTTACAGTCCAATCCAAGAAAGCAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

510

Amino Acids

57.93

Weight (kDa)

9.27

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF641	PF04859	120 - 244	1.1e-44	Plant protein of unknown function (DUF641)
GIL1_IRKI_C	PF24994	446 - 497	5.6e-25	GIL1/IRKI C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53380 AT1G53380 AT1G53380 AT1G53380 AT1G53380 AT3G14870 AT3G14870 AT3G14870 AT3G14870 AT3G14870
fragaria_vesca	FvH4_3g18160 FvH4_3g18160
malus_domestica	MD03G1276500.v1.1 MD11G1265400.v1.1
prunus_persica	Prupe.4G160500_v2.0.a1 Prupe.4G160500_v2.0.a1 Prupe.4G160500_v2.0.a1
pyrus_communis	pycom03g19360 pycom11g23340
rosa_chinensis	RchiOBHm_Chr5g0030591
rosa_laevigata	RLG00000033232
rosa_multiflora	Rmu_sc0003238.1_g000005
rosa_roxburghii	Rroxscaffold_1G00049700
rosa_rugosa	Rorug05G0118600 Rorug05G0118700 Rorug05G0118800 Rorug05G0118900
rosa_samantha	Rh5AG211000 Rh5BG210000 Rh5CG233700 Rh5DG214700
rosa_wichuraiana	Rw5G019300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1374
AccII	CGCG	2 cut(s)	90, 1152
AciI	CCGC	4 cut(s)	90, 1285, 1391, 1424
AclWI	GGATC	2 cut(s)	545, 1316
AcsI	RAATTY	4 cut(s)	248, 270, 468, 1142
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	2 cut(s)	64, 1160
AfiI	CCNNNNNNNGG	3 cut(s)	116, 1411, 1430
AflII	CTTAAG	1 cut(s)	656
AgsI	TTSAA	8 cut(s)	253, 505, 523, 725, 962, 1410, 1456, 1478
AjnI	CCWGG	1 cut(s)	282
AloI	GAACNNNNNNTCC	2 cut(s)	1385, 1417
Alw26I	GTCTC	2 cut(s)	327, 557
AlwI	GGATC	2 cut(s)	545, 1316
AoxI	GGCC	1 cut(s)	1308
ApeKI	GCWGC	7 cut(s)	365, 419, 476, 748, 896, 1051, 1331
ApoI	RAATTY	4 cut(s)	248, 270, 468, 1142
AseI	ATTAAT	1 cut(s)	162
Asp700I	GAANNNNTTC	2 cut(s)	378, 545
AspLEI	GCGC	1 cut(s)	1154
AspS9I	GGNCC	1 cut(s)	828
AsuC2I	CCSGG	3 cut(s)	110, 1117, 1449
AsuHPI	GGTGA	4 cut(s)	695, 929, 1247, 1486
AsuNHI	GCTAGC	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	828
AxyI	CCTNAGG	1 cut(s)	303
BarI	GAAGNNNNNNTAC	2 cut(s)	149, 181
BbsI	GAAGAC	1 cut(s)	945
BbvI	GCAGC	7 cut(s)	352, 406, 463, 760, 908, 1063, 1318
BccI	CCATC	6 cut(s)	4, 110, 850, 905, 983, 1177
BceAI	ACGGC	1 cut(s)	1428
BciT130I	CCWGG	1 cut(s)	284
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	3 cut(s)	110, 1117, 1449
BcoDI	GTCTC	2 cut(s)	327, 557
BfaI	CTAG	3 cut(s)	56, 792, 1427
BfmI	CTRYAG	1 cut(s)	353
BfrI	CTTAAG	1 cut(s)	656
BisI	GCNGC	7 cut(s)	366, 420, 477, 749, 897, 1052, 1332
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	7 cut(s)	367, 421, 478, 750, 898, 1053, 1333
BmcAI	AGTACT	1 cut(s)	1160
Bme1390I	CCNGG	4 cut(s)	110, 284, 1117, 1449
Bme18I	GGWCC	1 cut(s)	828
BmgT120I	GGNCC	1 cut(s)	828
BmiI	GGNNCC	1 cut(s)	1295
BmrFI	CCNGG	4 cut(s)	110, 284, 1117, 1449
BmsI	GCATC	4 cut(s)	91, 448, 1199, 1424
BmtI	GCTAGC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	945
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	123
BpuMI	CCSGG	3 cut(s)	110, 1117, 1449
Bsa29I	ATCGAT	1 cut(s)	909
BsaAI	YACGTR	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	108, 369, 1091
BsaXI	ACNNNNNCTCC	2 cut(s)	1385, 1415
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 1411, 1430
Bse118I	RCCGGY	1 cut(s)	1232
Bse21I	CCTNAGG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	284
BseCI	ATCGAT	1 cut(s)	909
BseDI	CCNNGG	3 cut(s)	108, 369, 1091
BseGI	GGATG	3 cut(s)	292, 865, 1174
BseLI	CCNNNNNNNGG	3 cut(s)	116, 1411, 1430
BseMII	CTCAG	6 cut(s)	443, 458, 507, 573, 659, 1514
BseXI	GCAGC	7 cut(s)	352, 406, 463, 760, 908, 1063, 1318
Bsh1236I	CGCG	2 cut(s)	90, 1152
BshFI	GGCC	1 cut(s)	1310
BshVI	ATCGAT	1 cut(s)	909
BsiSI	CCGG	4 cut(s)	110, 1117, 1233, 1449
BslFI	GGGAC	2 cut(s)	181, 896
BslI	CCNNNNNNNGG	3 cut(s)	116, 1411, 1430
BsmAI	GTCTC	2 cut(s)	327, 557
BsmFI	GGGAC	2 cut(s)	181, 896
BsmI	GAATGC	3 cut(s)	150, 301, 1234
BsnI	GGCC	1 cut(s)	1310
Bsp143I	GATC	5 cut(s)	289, 481, 550, 1127, 1321
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	4 cut(s)	90, 1285, 1391, 1424
BspANI	GGCC	1 cut(s)	1310
BspCNI	CTCAG	6 cut(s)	442, 457, 508, 574, 658, 1513
BspDI	ATCGAT	1 cut(s)	909
BspFNI	CGCG	2 cut(s)	90, 1152
BspLI	GGNNCC	1 cut(s)	1295
BspOI	GCTAGC	1 cut(s)	59
BspPI	GGATC	2 cut(s)	545, 1316
BspQI	GCTCTTC	1 cut(s)	384
BspTI	CTTAAG	1 cut(s)	656
BsrFI	RCCGGY	1 cut(s)	1232
BssAI	RCCGGY	1 cut(s)	1232
BssECI	CCNNGG	3 cut(s)	108, 369, 1091
BssMI	GATC	5 cut(s)	289, 481, 550, 1127, 1321
BssT1I	CCWWGG	2 cut(s)	369, 1091
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	6 cut(s)	490, 808, 823, 1441, 1471, 1509
Bst6I	CTCTTC	3 cut(s)	384, 518, 593
BstAFI	CTTAAG	1 cut(s)	656
BstBAI	YACGTR	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	57, 400
BstDEI	CTNAG	8 cut(s)	45, 303, 429, 444, 516, 582, 645, 1500
BstF5I	GGATG	3 cut(s)	292, 865, 1174
BstFNI	CGCG	2 cut(s)	90, 1152
BstHHI	GCGC	1 cut(s)	1154
BstKTI	GATC	5 cut(s)	292, 484, 553, 1130, 1324
BstMAI	GTCTC	2 cut(s)	327, 557
BstMBI	GATC	5 cut(s)	289, 481, 550, 1127, 1321
BstMWI	GCNNNNNNNGC	8 cut(s)	374, 383, 425, 757, 1057, 1277, 1291, 1397
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	4 cut(s)	108, 282, 1115, 1447
BstSFI	CTRYAG	1 cut(s)	353
BstUI	CGCG	2 cut(s)	90, 1152
BstV1I	GCAGC	7 cut(s)	352, 406, 463, 760, 908, 1063, 1318
BstV2I	GAAGAC	1 cut(s)	945
BstXI	CCANNNNNNTGG	2 cut(s)	176, 206
Bsu15I	ATCGAT	1 cut(s)	909
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	1 cut(s)	1310
BsuTUI	ATCGAT	1 cut(s)	909
BtgZI	GCGATG	1 cut(s)	866
BtsCI	GGATG	3 cut(s)	292, 865, 1174
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	57, 400
CfoI	GCGC	1 cut(s)	1154
Cfr10I	RCCGGY	1 cut(s)	1232
Cfr13I	GGNCC	1 cut(s)	828
ClaI	ATCGAT	1 cut(s)	909
Csp6I	GTAC	2 cut(s)	63, 1159
CviAII	CATG	2 cut(s)	1276, 1378
CviQI	GTAC	2 cut(s)	63, 1159
DdeI	CTNAG	8 cut(s)	45, 303, 429, 444, 516, 582, 645, 1500
DpnI	GATC	5 cut(s)	291, 483, 552, 1129, 1323
DpnII	GATC	5 cut(s)	289, 481, 550, 1127, 1321
Eam1104I	CTCTTC	3 cut(s)	384, 518, 593
EarI	CTCTTC	3 cut(s)	384, 518, 593
EciI	GGCGGA	1 cut(s)	1406
Eco130I	CCWWGG	2 cut(s)	369, 1091
Eco47I	GGWCC	1 cut(s)	828
Eco57I	CTGAAG	1 cut(s)	687
Eco81I	CCTNAGG	1 cut(s)	303
EcoRI	GAATTC	2 cut(s)	270, 468
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	2 cut(s)	369, 1091
ErhI	CCWWGG	2 cut(s)	369, 1091
FaeI	CATG	2 cut(s)	1279, 1381
FalI	AAGNNNNNCTT	4 cut(s)	366, 398, 1389, 1421
FaqI	GGGAC	2 cut(s)	181, 896
FatI	CATG	2 cut(s)	1275, 1377
FauI	CCCGC	1 cut(s)	1278
FauNDI	CATATG	1 cut(s)	616
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	1374
Fnu4HI	GCNGC	7 cut(s)	366, 420, 477, 749, 897, 1052, 1332
FokI	GGATG	3 cut(s)	299, 872, 1161
Fsp4HI	GCNGC	7 cut(s)	366, 420, 477, 749, 897, 1052, 1332
FspBI	CTAG	3 cut(s)	56, 792, 1427
GlaI	GCGC	1 cut(s)	1153
GluI	GCNGC	7 cut(s)	366, 420, 477, 749, 897, 1052, 1332
HaeIII	GGCC	1 cut(s)	1310
HapII	CCGG	4 cut(s)	110, 1117, 1233, 1449
HhaI	GCGC	1 cut(s)	1154
Hin1II	CATG	2 cut(s)	1279, 1381
Hin6I	GCGC	1 cut(s)	1152
HinP1I	GCGC	1 cut(s)	1152
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HpaII	CCGG	4 cut(s)	110, 1117, 1233, 1449
HphI	GGTGA	4 cut(s)	695, 929, 1247, 1486
Hpy166II	GTNNAC	3 cut(s)	496, 1375, 1489
Hpy188III	TCNNGA	2 cut(s)	140, 1325
Hpy8I	GTNNAC	3 cut(s)	496, 1375, 1489
HpyAV	CCTTC	5 cut(s)	535, 564, 1090, 1321, 1327
HpyCH4III	ACNGT	6 cut(s)	490, 808, 823, 1441, 1471, 1509
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	7 cut(s)	82, 95, 386, 956, 975, 1300, 1334
HpyF10VI	GCNNNNNNNGC	8 cut(s)	374, 383, 425, 757, 1057, 1277, 1291, 1397
HpyF3I	CTNAG	8 cut(s)	45, 303, 429, 444, 516, 582, 645, 1500
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	2 cut(s)	1279, 1381
HspAI	GCGC	1 cut(s)	1152
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	289, 481, 550, 1127, 1321
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	3 cut(s)	304, 837, 1299
Lsp1109I	GCAGC	7 cut(s)	352, 406, 463, 760, 908, 1063, 1318
LweI	GCATC	4 cut(s)	91, 448, 1199, 1424
MaeI	CTAG	3 cut(s)	56, 792, 1427
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	4 cut(s)	34, 131, 313, 1503
MalI	GATC	5 cut(s)	291, 483, 552, 1129, 1323
MboI	GATC	5 cut(s)	289, 481, 550, 1127, 1321
MlyI	GAGTC	3 cut(s)	31, 442, 656
MmeI	TCCRAC	3 cut(s)	65, 618, 672
MnlI	CCTC	6 cut(s)	519, 583, 688, 1387, 1502, 1507
MroXI	GAANNNNTTC	2 cut(s)	378, 545
MseI	TTAA	5 cut(s)	162, 414, 536, 657, 785
MspA1I	CMGCKG	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	656
MspI	CCGG	4 cut(s)	110, 1117, 1233, 1449
MspR9I	CCNGG	4 cut(s)	110, 284, 1117, 1449
Mva1269I	GAATGC	3 cut(s)	150, 301, 1234
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	2 cut(s)	90, 1152
MwoI	GCNNNNNNNGC	8 cut(s)	374, 383, 425, 757, 1057, 1277, 1291, 1397
NciI	CCSGG	3 cut(s)	110, 1117, 1449
NdeI	CATATG	1 cut(s)	616
NdeII	GATC	5 cut(s)	289, 481, 550, 1127, 1321
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	1279, 1381
NlaIV	GGNNCC	1 cut(s)	1295
PciSI	GCTCTTC	1 cut(s)	384
PctI	GAATGC	3 cut(s)	150, 301, 1234
PdmI	GAANNNNTTC	2 cut(s)	378, 545
PfoI	TCCNGGA	3 cut(s)	282, 1115, 1447
PkrI	GCNGC	7 cut(s)	367, 421, 478, 750, 898, 1053, 1333
PleI	GAGTC	3 cut(s)	30, 442, 656
PpsI	GAGTC	3 cut(s)	30, 442, 656
Ppu21I	YACGTR	1 cut(s)	62
PshBI	ATTAAT	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	1295
PspPI	GGNCC	1 cut(s)	828
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	2 cut(s)	64, 1160
RsaNI	GTAC	2 cut(s)	63, 1159
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	5 cut(s)	162, 414, 536, 657, 785
SatI	GCNGC	7 cut(s)	366, 420, 477, 749, 897, 1052, 1332
Sau3AI	GATC	5 cut(s)	289, 481, 550, 1127, 1321
Sau96I	GGNCC	1 cut(s)	828
ScaI	AGTACT	1 cut(s)	1160
SchI	GAGTC	3 cut(s)	31, 442, 656
ScrFI	CCNGG	4 cut(s)	110, 284, 1117, 1449
SfaNI	GCATC	4 cut(s)	91, 448, 1199, 1424
SfcI	CTRYAG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	828
SmlI	CTYRAG	2 cut(s)	138, 656
SmoI	CTYRAG	2 cut(s)	138, 656
SsiI	CCGC	4 cut(s)	90, 1285, 1391, 1424
SspI	AATATT	1 cut(s)	675
SspMI	CTAG	3 cut(s)	56, 792, 1427
StyD4I	CCNGG	4 cut(s)	108, 282, 1115, 1447
StyI	CCWWGG	2 cut(s)	369, 1091
TaaI	ACNGT	6 cut(s)	490, 808, 823, 1441, 1471, 1509
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	4 cut(s)	549, 909, 1320, 1360
TaqII	GACCGA	1 cut(s)	15
TatI	WGTACW	1 cut(s)	1158
Tru1I	TTAA	5 cut(s)	162, 414, 536, 657, 785
Tru9I	TTAA	5 cut(s)	162, 414, 536, 657, 785
TscAI	CASTG	1 cut(s)	24
TseI	GCWGC	7 cut(s)	365, 419, 476, 748, 896, 1051, 1331
TspDTI	ATGAA	6 cut(s)	396, 761, 876, 878, 881, 1163
TspGWI	ACGGA	2 cut(s)	480, 1094
TspRI	CASTG	1 cut(s)	24
Vha464I	CTTAAG	1 cut(s)	656
VpaK11BI	GGWCC	1 cut(s)	828
VspI	ATTAAT	1 cut(s)	162
XapI	RAATTY	4 cut(s)	248, 270, 468, 1142
XmiI	GTMKAC	1 cut(s)	1374
XmnI	GAANNNNTTC	2 cut(s)	378, 545
XspI	CTAG	3 cut(s)	56, 792, 1427
ZrmI	AGTACT	1 cut(s)	1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.