Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007379

Physical Location & Seq

Genomic Coordinates Reverse (-)

20042452 .. 20043626

Gene Structure 1175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G53690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGATCTACAACAGTCCGAAACAGATGATAAACAGCCCGAACAACTAGTTATTTACGTCTGCGGAGATTGTGGACAAGAGAACATTTTGAAGCGTGGAGATGTGTTCCAATGCAGAGATTGTGGGTTCCGTATTCTCTACAAGAAGCGTATTCTCGACAAGAAGGAAACCCGTATAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000418 GO:0000419 GO:0000428 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006352 GO:0006353 GO:0006354 GO:0006355 GO:0006356 GO:0006360 GO:0006361 GO:0006363 GO:0006366 GO:0006367 GO:0006368 GO:0006370 GO:0006383 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008152 GO:0008270 GO:0008380 GO:0008543 GO:0009058 GO:0009059 GO:0009301 GO:0009304 GO:0009452 GO:0009653 GO:0009719 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009893 GO:0009932 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010604 GO:0010628 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016073 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023052 GO:0030154 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032991 GO:0033554 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0036260 GO:0040007 GO:0040029 GO:0042221 GO:0042795 GO:0042797 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044706 GO:0045815 GO:0046483 GO:0046872 GO:0046914 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051716 GO:0055029 GO:0060147 GO:0060255 GO:0060560 GO:0060964 GO:0060966 GO:0060968 GO:0061695 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071704 GO:0071774 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0097747 GO:0098781 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

DNA_RNApol_7kD

Protein Analysis

60

Amino Acids

7.08

Weight (kDa)

6.16

Isoelectric Point (pI)

64.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RPAB4	PF03604	19 - 50	9.1e-16	DNA directed RNA polymerase, 7 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53690 AT1G53690 AT5G41010
fragaria_vesca	FvH4_3g22950 FvH4_5g18480
malus_domestica	MD12G1077100.v1.1 MD14G1070900.v1.1 MD14G1071000.v1.1
prunus_persica	Prupe.4G215400_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.5G244400_v2.0.a1
pyrus_communis	pycom12g06260
rosa_chinensis	RchiOBHm_Chr5g0040221 RchiOBHm_Chr7g0177031
rosa_laevigata	RLG00000005562
rosa_roxburghii	Rroxscaffold_1G00041040
rosa_samantha	Rh5AG271300 Rh5CG307500 Rh5DG282800 Rh7AG002600 Rh7BG002900 Rh7CG002200
rosa_wichuraiana	Rw5G025370 Rw7G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	91
AhlI	ACTAGT	1 cut(s)	46
AlwI	GGATC	1 cut(s)	12
BcuI	ACTAGT	1 cut(s)	46
BfaI	CTAG	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	12
BssMI	GATC	1 cut(s)	4
Bst4CI	ACNGT	1 cut(s)	15
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
CviJI	RGCY	1 cut(s)	37
CviKI_1	RGCY	1 cut(s)	37
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
FaiI	YATR	1 cut(s)	176
FspBI	CTAG	1 cut(s)	47
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	4
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	57
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MflI	RGATCY	1 cut(s)	4
MseI	TTAA	1 cut(s)	181
NdeII	GATC	1 cut(s)	4
NlaIV	GGNNCC	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	181
Sau3AI	GATC	1 cut(s)	4
SetI	ASST	1 cut(s)	60
SgeI	CNNG	7 cut(s)	50, 59, 89, 107, 154, 167, 172
SpeI	ACTAGT	1 cut(s)	46
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	15
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	1 cut(s)	156
Tru1I	TTAA	1 cut(s)	181
Tru9I	TTAA	1 cut(s)	181
TspGWI	ACGGA	1 cut(s)	119
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.