Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007379

Physical Location & Seq

Genomic Coordinates Reverse (-)

16090718 .. 16091915

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

AAGCCCACCCATTCTGAGCCCGATCCGACAGTCGCTTCCCTTATCTTTGCTTCAGAAATCAGAAGCAGGGTTTTATCAAAGGTTTTAGCAGAGGCCGCAGTAGAGGAGCAAAGAAAAGAAGAAACCTTTGGAAGAAGGAGGTCAACCATGTCGTCGGCGCCAGCGAATCCTCGTCCTCAGCCACCACAACAGAAAAGGGACATCCTCTACGACTGCGGAGGTTGTGGGGAGGAAGTCCCGTTGAGGCCTGGGGATAAGATTGAGTGCCCCCATTGCAATTACCCAGTTCTATTCAAGAAGCGTACCCGTCGCATTGTGGAGTTTCAGGCACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006366 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

DNA_RNApol_7kD

Protein Analysis

112

Amino Acids

12.59

Weight (kDa)

9.27

Isoelectric Point (pI)

94.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RPAB4	PF03604	70 - 101	5.3e-09	DNA directed RNA polymerase, 7 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53690 AT1G53690 AT5G41010
fragaria_vesca	FvH4_3g22950 FvH4_5g18480
malus_domestica	MD12G1077100.v1.1 MD14G1070900.v1.1 MD14G1071000.v1.1
prunus_persica	Prupe.4G215400_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.5G244400_v2.0.a1
pyrus_communis	pycom12g06260
rosa_chinensis	RchiOBHm_Chr5g0040221 RchiOBHm_Chr7g0177031
rosa_laevigata	RLG00000005562
rosa_roxburghii	Rroxscaffold_1G00041040
rosa_samantha	Rh5AG271300 Rh5CG307500 Rh5DG282800 Rh7AG002600 Rh7BG002900 Rh7CG002200
rosa_wichuraiana	Rw5G025370 Rw7G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AciI	CCGC	2 cut(s)	96, 216
AclWI	GGATC	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	36
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	1 cut(s)	304
AgsI	TTSAA	1 cut(s)	295
AjnI	CCWGG	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	2 cut(s)	93, 245
AspLEI	GCGC	1 cut(s)	160
BaeGI	GKGCMC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	21
BbvCI	CCTCAGC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	249
BmrI	ACTGGG	1 cut(s)	278
BmuI	ACTGGG	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	201
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	6, 191
BseNI	ACTGG	1 cut(s)	284
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	269
BshFI	GGCC	2 cut(s)	95, 247
BshNI	GGYRCC	1 cut(s)	157
BslFI	GGGAC	2 cut(s)	212, 221
BsmFI	GGGAC	2 cut(s)	212, 221
BsnI	GGCC	2 cut(s)	95, 247
Bsp1286I	GDGCHC	2 cut(s)	21, 269
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	2 cut(s)	96, 216
BspANI	GGCC	2 cut(s)	95, 247
BspCNI	CTCAG	2 cut(s)	7, 190
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	22
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	15, 177
BstF5I	GGATG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 273
BstNI	CCWGG	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	247
BstSLI	GKGCMC	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	95, 247
BtsCI	GGATG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	162
CfoI	GCGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	5 cut(s)	4, 19, 95, 181, 247
CviKI_1	RGCY	5 cut(s)	4, 19, 95, 181, 247
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	2 cut(s)	15, 177
DinI	GGCGCC	1 cut(s)	159
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
Eco147I	AGGCCT	1 cut(s)	247
Eco24I	GRGCYC	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	21
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
FaeI	CATG	1 cut(s)	151
FaiI	YATR	1 cut(s)	149
FaqI	GGGAC	2 cut(s)	212, 221
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	96
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	95, 247
HhaI	GCGC	1 cut(s)	160
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	4 cut(s)	16, 27, 55, 62
Hpy188III	TCNNGA	1 cut(s)	295
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	2 cut(s)	157, 312
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 273
HpyF3I	CTNAG	2 cut(s)	15, 177
HpySE526I	ACGT	1 cut(s)	331
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	158
KasI	GGCGCC	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	6 cut(s)	52, 174, 234, 261, 297, 311
MaeII	ACGT	1 cut(s)	331
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	131, 144
MhlI	GDGCHC	2 cut(s)	21, 269
MluCI	AATT	1 cut(s)	277
Mly113I	GGCGCC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	9 cut(s)	85, 97, 132, 180, 186, 212, 215, 223, 237
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
MwoI	GCNNNNNNNGC	2 cut(s)	95, 273
NarI	GGCGCC	1 cut(s)	158
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	159
PceI	AGGCCT	1 cut(s)	247
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	166
PkrI	GCNGC	1 cut(s)	97
PluTI	GGCGCC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	159
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
SatI	GCNGC	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	22
ScrFI	CCNGG	1 cut(s)	249
SduI	GDGCHC	2 cut(s)	21, 269
SetI	ASST	5 cut(s)	84, 128, 143, 223, 334
SfoI	GGCGCC	1 cut(s)	159
Sse9I	AATT	1 cut(s)	277
SseBI	AGGCCT	1 cut(s)	247
SsiI	CCGC	2 cut(s)	96, 216
SspDI	GGCGCC	1 cut(s)	157
StuI	AGGCCT	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	334
TasI	AATT	1 cut(s)	277
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.