Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007379

Physical Location & Seq

Genomic Coordinates Reverse (-)

9382319 .. 9384511

Gene Structure 2193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1077100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGATCCTCCGCCGCCAGAGGCCGTCTACTACATCTGTGGAGATTGTGGGATGGAGGTGCAGCTGAAATCCAACGACGTGATTCAGTGCCGCGAGTGCGGTTACCGTATCTTATACAAGAAGCGTACTCGCCGCATTGTTCAGTATGAGGCACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006366 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

DNA_RNApol_7kD

Protein Analysis

53

Amino Acids

6.16

Weight (kDa)

8.42

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RPAB4	PF03604	11 - 42	2.9e-18	DNA directed RNA polymerase, 7 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53690 AT1G53690 AT5G41010
fragaria_vesca	FvH4_3g22950 FvH4_5g18480
malus_domestica	MD12G1077100.v1.1 MD14G1070900.v1.1 MD14G1071000.v1.1
prunus_persica	Prupe.4G215400_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.5G244400_v2.0.a1
pyrus_communis	pycom12g06260
rosa_chinensis	RchiOBHm_Chr5g0040221 RchiOBHm_Chr7g0177031
rosa_laevigata	RLG00000005562
rosa_roxburghii	Rroxscaffold_1G00041040
rosa_samantha	Rh5AG271300 Rh5CG307500 Rh5DG282800 Rh7AG002600 Rh7BG002900 Rh7CG002200
rosa_wichuraiana	Rw5G025370 Rw7G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	93
AciI	CCGC	5 cut(s)	11, 14, 91, 99, 133
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	127
AjiI	CACGTC	1 cut(s)	79
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	61
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	8
BisI	GCNGC	4 cut(s)	14, 62, 91, 133
BlsI	GCNGC	4 cut(s)	15, 63, 92, 134
BmgBI	CACGTC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	6
BseGI	GGATG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	5 cut(s)	11, 14, 91, 99, 133
BspANI	GGCC	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BssMI	GATC	1 cut(s)	4
Bst4CI	ACNGT	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	154
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstPI	GGTNACC	1 cut(s)	101
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	23
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	126
CviJI	RGCY	2 cut(s)	23, 64
CviKI_1	RGCY	2 cut(s)	23, 64
CviQI	GTAC	1 cut(s)	126
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
FaiI	YATR	2 cut(s)	115, 147
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	14, 62, 91, 133
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	4 cut(s)	14, 62, 91, 133
GluI	GCNGC	4 cut(s)	14, 62, 91, 133
HaeIII	GGCC	1 cut(s)	23
HinfI	GANTC	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	1 cut(s)	30
Lsp1109I	GCAGC	1 cut(s)	73
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MflI	RGATCY	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	4 cut(s)	13, 18, 49, 142
MspA1I	CMGCKG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	96
NdeII	GATC	1 cut(s)	4
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	15, 63, 92, 134
PspEI	GGTNACC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SatI	GCNGC	4 cut(s)	14, 62, 91, 133
Sau3AI	GATC	1 cut(s)	4
SetI	ASST	3 cut(s)	60, 66, 81
SgeI	CNNG	6 cut(s)	29, 91, 104, 106, 130, 141
SsiI	CCGC	5 cut(s)	11, 14, 91, 99, 133
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	1 cut(s)	81
TauI	GCSGC	3 cut(s)	16, 93, 135
TfiI	GAWTC	1 cut(s)	82
TscAI	CASTG	1 cut(s)	92
TseI	GCWGC	1 cut(s)	61
TspRI	CASTG	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.