Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0007379

Physical Location & Seq

Genomic Coordinates Forward (+)

208004 .. 209734

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G000210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGATCCCCAGCAGCCAGCAGAGCCAGTGTACTACATTTGTGGAGATTGCGGCATGGAGATCCCTTTGAAGCCAAACGATGTGATTCAGTGCCGCGAGTGCGGTTACCGCATCTTATACAAGAAGCGCACTCGTCGCATTGTTCAGTATGAGGCACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006366 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

DNA_RNApol_7kD

Protein Analysis

53

Amino Acids

6.31

Weight (kDa)

8.42

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RPAB4	PF03604	12 - 43	1.3e-17	DNA directed RNA polymerase, 7 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0007379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53690 AT1G53690 AT5G41010
fragaria_vesca	FvH4_3g22950 FvH4_5g18480
malus_domestica	MD12G1077100.v1.1 MD14G1070900.v1.1 MD14G1071000.v1.1
prunus_persica	Prupe.4G215400_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.5G244400_v2.0.a1
pyrus_communis	pycom12g06260
rosa_chinensis	RchiOBHm_Chr5g0040221 RchiOBHm_Chr7g0177031
rosa_laevigata	RLG00000005562
rosa_roxburghii	Rroxscaffold_1G00041040
rosa_samantha	Rh5AG271300 Rh5CG307500 Rh5DG282800 Rh7AG002600 Rh7BG002900 Rh7CG002200
rosa_wichuraiana	Rw5G025370 Rw7G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	96
AciI	CCGC	4 cut(s)	51, 94, 102, 109
AclWI	GGATC	2 cut(s)	12, 55
AfaI	GTAC	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	70
AlwI	GGATC	2 cut(s)	12, 55
ApeKI	GCWGC	1 cut(s)	13
AspLEI	GCGC	1 cut(s)	129
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	25
BisI	GCNGC	3 cut(s)	14, 52, 94
BlsI	GCNGC	3 cut(s)	15, 53, 95
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	120
Bse1I	ACTGG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	4, 60
BspACI	CCGC	4 cut(s)	51, 94, 102, 109
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	12, 55
BsrI	ACTGG	1 cut(s)	26
BssMI	GATC	2 cut(s)	4, 60
BstC8I	GCNNGC	2 cut(s)	18, 157
BstEII	GGTNACC	1 cut(s)	104
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	7, 63
BstMBI	GATC	2 cut(s)	4, 60
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 99, 108, 135
BstPI	GGTNACC	1 cut(s)	104
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	2 cut(s)	4, 60
BstYI	RGATCY	2 cut(s)	4, 60
BtsIMutI	CAGTG	2 cut(s)	33, 95
Cac8I	GCNNGC	2 cut(s)	18, 157
CfoI	GCGC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	3 cut(s)	16, 25, 73
CviKI_1	RGCY	3 cut(s)	16, 25, 73
CviQI	GTAC	1 cut(s)	31
DpnI	GATC	2 cut(s)	6, 62
DpnII	GATC	2 cut(s)	4, 60
Eco91I	GGTNACC	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	104
FaeI	CATG	1 cut(s)	58
FaiI	YATR	3 cut(s)	56, 118, 150
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	14, 52, 94
Fsp4HI	GCNGC	3 cut(s)	14, 52, 94
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	3 cut(s)	14, 52, 94
GsaI	CCCAGC	1 cut(s)	13
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	1 cut(s)	85
Hpy166II	GTNNAC	1 cut(s)	31
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	138
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 99, 108, 135
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	4, 60
LpnPI	CCDG	3 cut(s)	23, 30, 39
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	6, 62
MboI	GATC	2 cut(s)	4, 60
MflI	RGATCY	2 cut(s)	4, 60
MnlI	CCTC	1 cut(s)	145
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	22, 99, 108, 135
NdeII	GATC	2 cut(s)	4, 60
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	15, 53, 95
PspEI	GGTNACC	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	4, 60
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
SatI	GCNGC	3 cut(s)	14, 52, 94
Sau3AI	GATC	2 cut(s)	4, 60
SfaNI	GCATC	1 cut(s)	120
SgeI	CNNG	8 cut(s)	22, 29, 38, 67, 107, 109, 133, 144
SsiI	CCGC	4 cut(s)	51, 94, 102, 109
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	2 cut(s)	54, 96
TfiI	GAWTC	1 cut(s)	85
TscAI	CASTG	2 cut(s)	33, 95
TseI	GCWGC	1 cut(s)	13
TspRI	CASTG	2 cut(s)	33, 95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.