DNA-directed RNA polymerases I, II, and III
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G53690 AT1G53690 AT5G41010 |
| fragaria_vesca | FvH4_3g22950 FvH4_5g18480 |
| malus_domestica | MD12G1077100.v1.1 MD14G1070900.v1.1 MD14G1071000.v1.1 |
| prunus_persica | Prupe.4G215400_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.5G244400_v2.0.a1 |
| pyrus_communis | pycom12g06260 |
| rosa_chinensis | RchiOBHm_Chr5g0040221 RchiOBHm_Chr7g0177031 |
| rosa_laevigata | RLG00000005562 |
| rosa_roxburghii | Rroxscaffold_1G00041040 |
| rosa_samantha | Rh5AG271300 Rh5CG307500 Rh5DG282800 Rh7AG002600 Rh7BG002900 Rh7CG002200 |
| rosa_wichuraiana | Rw5G025370 Rw7G000210 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 24 |
| AccII | CGCG | 1 cut(s) | 90 |
| AciI | CCGC | 3 cut(s) | 8, 88, 96 |
| AclWI | GGATC | 2 cut(s) | 12, 113 |
| AgsI | TTSAA | 1 cut(s) | 64 |
| AlwI | GGATC | 2 cut(s) | 12, 113 |
| ApeKI | GCWGC | 1 cut(s) | 10 |
| AspLEI | GCGC | 1 cut(s) | 123 |
| BamHI | GGATCC | 1 cut(s) | 4 |
| BbvI | GCAGC | 1 cut(s) | 22 |
| BccI | CCATC | 1 cut(s) | 43 |
| BisI | GCNGC | 2 cut(s) | 11, 88 |
| BlsI | GCNGC | 2 cut(s) | 12, 89 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BsaWI | WCCGGW | 1 cut(s) | 102 |
| Bse1I | ACTGG | 1 cut(s) | 20 |
| BseGI | GGATG | 1 cut(s) | 54 |
| BseNI | ACTGG | 1 cut(s) | 20 |
| BseXI | GCAGC | 1 cut(s) | 22 |
| Bsh1236I | CGCG | 1 cut(s) | 90 |
| BsiSI | CCGG | 1 cut(s) | 103 |
| BsmI | GAATGC | 1 cut(s) | 98 |
| Bsp143I | GATC | 2 cut(s) | 4, 105 |
| BspACI | CCGC | 3 cut(s) | 8, 88, 96 |
| BspFNI | CGCG | 1 cut(s) | 90 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 2 cut(s) | 12, 113 |
| BsrI | ACTGG | 1 cut(s) | 20 |
| BssMI | GATC | 2 cut(s) | 4, 105 |
| BstC8I | GCNNGC | 1 cut(s) | 151 |
| BstEII | GGTNACC | 1 cut(s) | 98 |
| BstF5I | GGATG | 1 cut(s) | 54 |
| BstFNI | CGCG | 1 cut(s) | 90 |
| BstHHI | GCGC | 1 cut(s) | 123 |
| BstKTI | GATC | 2 cut(s) | 7, 108 |
| BstMBI | GATC | 2 cut(s) | 4, 105 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 16, 93, 129 |
| BstPI | GGTNACC | 1 cut(s) | 98 |
| BstUI | CGCG | 1 cut(s) | 90 |
| BstV1I | GCAGC | 1 cut(s) | 22 |
| BstX2I | RGATCY | 2 cut(s) | 4, 105 |
| BstYI | RGATCY | 2 cut(s) | 4, 105 |
| BtsCI | GGATG | 1 cut(s) | 54 |
| BtsIMutI | CAGTG | 1 cut(s) | 89 |
| Cac8I | GCNNGC | 1 cut(s) | 151 |
| CfoI | GCGC | 1 cut(s) | 123 |
| CviJI | RGCY | 3 cut(s) | 13, 19, 67 |
| CviKI_1 | RGCY | 3 cut(s) | 13, 19, 67 |
| DpnI | GATC | 2 cut(s) | 6, 107 |
| DpnII | GATC | 2 cut(s) | 4, 105 |
| Eco91I | GGTNACC | 1 cut(s) | 98 |
| EcoO65I | GGTNACC | 1 cut(s) | 98 |
| FaiI | YATR | 2 cut(s) | 112, 144 |
| FblI | GTMKAC | 1 cut(s) | 24 |
| Fnu4HI | GCNGC | 2 cut(s) | 11, 88 |
| FokI | GGATG | 1 cut(s) | 61 |
| Fsp4HI | GCNGC | 2 cut(s) | 11, 88 |
| GlaI | GCGC | 1 cut(s) | 122 |
| GluI | GCNGC | 2 cut(s) | 11, 88 |
| HapII | CCGG | 1 cut(s) | 103 |
| HhaI | GCGC | 1 cut(s) | 123 |
| Hin6I | GCGC | 1 cut(s) | 121 |
| HinP1I | GCGC | 1 cut(s) | 121 |
| HinfI | GANTC | 2 cut(s) | 55, 79 |
| HpaII | CCGG | 1 cut(s) | 103 |
| Hpy166II | GTNNAC | 1 cut(s) | 25 |
| Hpy8I | GTNNAC | 1 cut(s) | 25 |
| Hpy99I | CGWCG | 1 cut(s) | 132 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 16, 93, 129 |
| HspAI | GCGC | 1 cut(s) | 121 |
| Kzo9I | GATC | 2 cut(s) | 4, 105 |
| LpnPI | CCDG | 3 cut(s) | 27, 33, 116 |
| Lsp1109I | GCAGC | 1 cut(s) | 22 |
| MaeIII | GTNAC | 1 cut(s) | 98 |
| MalI | GATC | 2 cut(s) | 6, 107 |
| MboI | GATC | 2 cut(s) | 4, 105 |
| MflI | RGATCY | 2 cut(s) | 4, 105 |
| MnlI | CCTC | 1 cut(s) | 139 |
| MspI | CCGG | 1 cut(s) | 103 |
| Mva1269I | GAATGC | 1 cut(s) | 98 |
| MvnI | CGCG | 1 cut(s) | 90 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 16, 93, 129 |
| NdeII | GATC | 2 cut(s) | 4, 105 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| PctI | GAATGC | 1 cut(s) | 98 |
| PfeI | GAWTC | 2 cut(s) | 55, 79 |
| PkrI | GCNGC | 2 cut(s) | 12, 89 |
| PspEI | GGTNACC | 1 cut(s) | 98 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PsuI | RGATCY | 2 cut(s) | 4, 105 |
| SatI | GCNGC | 2 cut(s) | 11, 88 |
| Sau3AI | GATC | 2 cut(s) | 4, 105 |
| SgeI | CNNG | 7 cut(s) | 26, 32, 73, 101, 115, 127, 138 |
| SsiI | CCGC | 3 cut(s) | 8, 88, 96 |
| TauI | GCSGC | 1 cut(s) | 90 |
| TfiI | GAWTC | 2 cut(s) | 55, 79 |
| TscAI | CASTG | 1 cut(s) | 89 |
| TseI | GCWGC | 1 cut(s) | 10 |
| TspRI | CASTG | 1 cut(s) | 89 |
| XmiI | GTMKAC | 1 cut(s) | 24 |