Rh5DG282800

DNA-directed 5'-3' RNA polymerase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007379
Physical Location & Seq
Reverse (-)
34765053 .. 34766317
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG282800.1

Sequence Viewer

Length: 276 bp
ATGTCGTCGGCGCCACCGAATCCTCGTCCTCAGCCACCACAACAGAAAAGGGACCTCTTGTATGACTGCGGAGGTTGTGGGGAAGAAGTCCCATTGAGGCCCGGGGATAAGATTGAGTGCCCCCATTGCAATTACCCTGTTCTATTCAAGAAACGAACCCGTCGCAGTAAGTTCTATTTTTATTTTGTTTTTCTTTCAATTGCAAATATGGCTTTGTTTAGAATTCTGTGTGAGCAAGCATTATTTTGTTGGAAATCTTCATATGTTATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0000428 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0003899 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006351 GO:0006352 GO:0006353 GO:0006354 GO:0006355 GO:0006356 GO:0006360 GO:0006361 GO:0006363 GO:0006366 GO:0006367 GO:0006368 GO:0006370 GO:0006383 GO:0006396 GO:0006397 GO:0006399 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0008150 GO:0008152 GO:0008270 GO:0008380 GO:0008543 GO:0009058 GO:0009059 GO:0009301 GO:0009304 GO:0009452 GO:0009653 GO:0009719 GO:0009826 GO:0009856 GO:0009860 GO:0009889 GO:0009893 GO:0009932 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010604 GO:0010628 GO:0016043 GO:0016049 GO:0016070 GO:0016071 GO:0016073 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023052 GO:0030154 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0032991 GO:0033554 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0036260 GO:0040007 GO:0040029 GO:0042221 GO:0042795 GO:0042797 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0044706 GO:0045815 GO:0046483 GO:0046872 GO:0046914 GO:0048468 GO:0048518 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051716 GO:0055029 GO:0060147 GO:0060255 GO:0060560 GO:0060964 GO:0060966 GO:0060968 GO:0061695 GO:0065007 GO:0070013 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071704 GO:0071774 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0097747 GO:0098781 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169
Pfam Domains
Protein Families
DNA_RNApol_7kD

Protein Analysis

91

Amino Acids

10.62

Weight (kDa)

9.0

Isoelectric Point (pI)

93.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RPAB4 PF03604 21 - 52 3.6e-09 DNA directed RNA polymerase, 7 kDa subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AciI CCGC 1 cut(s) 69
AcsI RAATTY 1 cut(s) 222
AcyI GRCGYC 1 cut(s) 11
AgsI TTSAA 2 cut(s) 148, 198
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 222
AspLEI GCGC 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 52, 99
AsuC2I CCSGG 2 cut(s) 102, 103
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 10
BbvCI CCTCAGC 1 cut(s) 30
BcnI CCSGG 2 cut(s) 102, 103
BfoI RGCGCY 1 cut(s) 14
Bme1390I CCNGG 2 cut(s) 102, 103
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 52, 99
BmiI GGNNCC 2 cut(s) 12, 53
BmrFI CCNGG 2 cut(s) 102, 103
Bpu10I CCTNAGC 1 cut(s) 30
BpuMI CCSGG 2 cut(s) 102, 103
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 101, 102
Bse3DI GCAATG 1 cut(s) 124
BseDI CCNNGG 2 cut(s) 101, 102
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 122
BshFI GGCC 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 2 cut(s) 65, 74
BsmFI GGGAC 2 cut(s) 65, 74
BsnI GGCC 1 cut(s) 100
BsoBI CYCGRG 1 cut(s) 101
Bsp1286I GDGCHC 1 cut(s) 122
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 2 cut(s) 12, 53
BspT107I GGYRCC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 124
BssECI CCNNGG 2 cut(s) 101, 102
BssNI GRCGYC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 1 cut(s) 13
BstMWI GCNNNNNNNGC 2 cut(s) 126, 209
BstSCI CCNGG 2 cut(s) 100, 101
BstSLI GKGCMC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 237
CfoI GCGC 1 cut(s) 13
Cfr13I GGNCC 2 cut(s) 52, 99
Cfr9I CCCGGG 1 cut(s) 101
CviJI RGCY 3 cut(s) 34, 100, 212
CviKI_1 RGCY 3 cut(s) 34, 100, 212
DdeI CTNAG 1 cut(s) 30
DinI GGCGCC 1 cut(s) 12
Eco47I GGWCC 1 cut(s) 52
Eco88I CYCGRG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 222
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
FaiI YATR 4 cut(s) 63, 209, 262, 264
FaqI GGGAC 2 cut(s) 65, 74
FauNDI CATATG 1 cut(s) 262
GlaI GCGC 1 cut(s) 12
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 102
HhaI GCGC 1 cut(s) 13
Hin1I GRCGYC 1 cut(s) 11
Hin6I GCGC 1 cut(s) 11
HinP1I GCGC 1 cut(s) 11
HinfI GANTC 1 cut(s) 19
HpaII CCGG 1 cut(s) 102
Hpy188III TCNNGA 1 cut(s) 148
Hpy99I CGWCG 2 cut(s) 10, 165
HpyCH4V TGCA 2 cut(s) 129, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 209
HpyF3I CTNAG 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 11
HspAI GCGC 1 cut(s) 11
KasI GGCGCC 1 cut(s) 10
LpnPI CCDG 2 cut(s) 115, 150
MboII GAAGA 2 cut(s) 95, 249
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 122
MluCI AATT 3 cut(s) 130, 198, 222
Mly113I GGCGCC 1 cut(s) 11
MmeI TCCRAC 1 cut(s) 230
MnlI CCTC 5 cut(s) 33, 39, 65, 65, 90
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 2 cut(s) 102, 103
MunI CAATTG 1 cut(s) 198
MwoI GCNNNNNNNGC 2 cut(s) 126, 209
NarI GGCGCC 1 cut(s) 11
NciI CCSGG 2 cut(s) 102, 103
NdeI CATATG 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 12, 53
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PfeI GAWTC 1 cut(s) 19
PluTI GGCGCC 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 2 cut(s) 12, 53
PspPI GGNCC 2 cut(s) 52, 99
PspPPI RGGWCCY 1 cut(s) 52
Sau96I GGNCC 2 cut(s) 52, 99
ScrFI CCNGG 2 cut(s) 102, 103
SduI GDGCHC 1 cut(s) 122
SetI ASST 2 cut(s) 57, 76
SfoI GGCGCC 1 cut(s) 12
SgeI CNNG 9 cut(s) 36, 70, 113, 114, 115, 149, 160, 171, 248
SinI GGWCC 1 cut(s) 52
SmaI CCCGGG 1 cut(s) 103
Sse9I AATT 3 cut(s) 130, 198, 222
SsiI CCGC 1 cut(s) 69
SspDI GGCGCC 1 cut(s) 10
StyD4I CCNGG 2 cut(s) 100, 101
TasI AATT 3 cut(s) 130, 198, 222
TfiI GAWTC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 249
TspMI CCCGGG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 1 cut(s) 222
XmaI CCCGGG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.