Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007379

Physical Location & Seq

Genomic Coordinates Reverse (-)

10645761 .. 10647915

Gene Structure 2155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGTTCTACAGACTCTGAGATATAATAATGTTCCTGAGAAAAAAGCCAAAGACAGTGATGGAGTGAAGCACACAGGAACCAAGCTAGCACTAAACGACTTTCAAAGATTCCCCTTACCCCTCTCTGCCTGCCCTGAATTCCCATCCTGTATTTTGGTCGAAGAACCCCGTGAAAACCCTAGACCCAGGTCATCCATGGATCCTCAGCCGCCCGCAGAGCCTGTGTACTACATCTGTGGAGATTGCGGCATGGAAATCCCTCTGAAGCCGAATGATGTGATTCAGTGCCGCGAGTGTGGCTACCGCATCTTGTACAAGAAACGCACTCGTCGCATTGTTCAGTACGAGGCACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006366 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

DNA_RNApol_7kD

Protein Analysis

119

Amino Acids

13.63

Weight (kDa)

8.77

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RPAB4	PF03604	77 - 108	8.3e-17	DNA directed RNA polymerase, 7 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0007379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53690 AT1G53690 AT5G41010
fragaria_vesca	FvH4_3g22950 FvH4_5g18480
malus_domestica	MD12G1077100.v1.1 MD14G1070900.v1.1 MD14G1071000.v1.1
prunus_persica	Prupe.4G215400_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.5G244400_v2.0.a1
pyrus_communis	pycom12g06260
rosa_chinensis	RchiOBHm_Chr5g0040221 RchiOBHm_Chr7g0177031
rosa_laevigata	RLG00000005562
rosa_roxburghii	Rroxscaffold_1G00041040
rosa_samantha	Rh5AG271300 Rh5CG307500 Rh5DG282800 Rh7AG002600 Rh7BG002900 Rh7CG002200
rosa_wichuraiana	Rw5G025370 Rw7G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	291
AciI	CCGC	5 cut(s)	209, 213, 246, 289, 304
AclWI	GGATC	2 cut(s)	194, 207
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	284
AfaI	GTAC	3 cut(s)	227, 314, 344
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
AlwI	GGATC	2 cut(s)	194, 207
AlwNI	CAGNNNCTG	2 cut(s)	16, 221
ApoI	RAATTY	1 cut(s)	137
AsuNHI	GCTAGC	1 cut(s)	85
BamHI	GGATCC	1 cut(s)	199
BbvCI	CCTCAGC	1 cut(s)	204
BccI	CCATC	2 cut(s)	53, 151
BciT130I	CCWGG	1 cut(s)	187
BfaI	CTAG	2 cut(s)	86, 180
BfmI	CTRYAG	1 cut(s)	8
BisI	GCNGC	3 cut(s)	209, 247, 289
BlsI	GCNGC	3 cut(s)	210, 248, 290
Bme1390I	CCNGG	1 cut(s)	187
BmiI	GGNNCC	2 cut(s)	79, 201
BmrFI	CCNGG	1 cut(s)	187
BmsI	GCATC	1 cut(s)	315
BmtI	GCTAGC	1 cut(s)	89
BoxI	GACNNNNGTC	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	185, 195
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	185, 195
BseGI	GGATG	2 cut(s)	143, 191
BseMII	CTCAG	3 cut(s)	8, 27, 218
Bsh1236I	CGCG	1 cut(s)	291
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	199
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	5 cut(s)	209, 213, 246, 289, 304
BspCNI	CTCAG	3 cut(s)	9, 28, 217
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	79, 201
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	194, 207
BsrGI	TGTACA	1 cut(s)	312
BssECI	CCNNGG	2 cut(s)	185, 195
BssMI	GATC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	56
BstAUI	TGTACA	1 cut(s)	312
BstC8I	GCNNGC	4 cut(s)	87, 130, 213, 352
BstDEI	CTNAG	3 cut(s)	17, 36, 204
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	143, 191
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 297, 330
BstNI	CCWGG	1 cut(s)	187
BstPAI	GACNNNNGTC	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	8
BstUI	CGCG	1 cut(s)	291
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	2 cut(s)	143, 191
BtsIMutI	CAGTG	2 cut(s)	61, 290
Cac8I	GCNNGC	4 cut(s)	87, 130, 213, 352
CaiI	CAGNNNCTG	2 cut(s)	16, 221
Csp6I	GTAC	3 cut(s)	226, 313, 343
CviAII	CATG	2 cut(s)	196, 250
CviJI	RGCY	6 cut(s)	47, 85, 208, 220, 268, 300
CviKI_1	RGCY	6 cut(s)	47, 85, 208, 220, 268, 300
CviQI	GTAC	3 cut(s)	226, 313, 343
DdeI	CTNAG	3 cut(s)	17, 36, 204
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	199, 253
FaiI	YATR	3 cut(s)	24, 197, 251
FatI	CATG	2 cut(s)	195, 249
FauI	CCCGC	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	209, 247, 289
FokI	GGATG	2 cut(s)	130, 178
Fsp4HI	GCNGC	3 cut(s)	209, 247, 289
FspBI	CTAG	2 cut(s)	86, 180
GluI	GCNGC	3 cut(s)	209, 247, 289
Hin1II	CATG	2 cut(s)	199, 253
HinfI	GANTC	3 cut(s)	13, 108, 280
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	18, 264
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	333
HpyCH4III	ACNGT	1 cut(s)	56
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 297, 330
HpyF3I	CTNAG	3 cut(s)	17, 36, 204
Hsp92II	CATG	2 cut(s)	199, 253
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	8 cut(s)	48, 60, 142, 147, 160, 172, 199, 234
LweI	GCATC	1 cut(s)	315
MaeI	CTAG	2 cut(s)	86, 180
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	1 cut(s)	173
MflI	RGATCY	1 cut(s)	199
MluCI	AATT	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	4 cut(s)	131, 213, 270, 340
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	217, 297, 330
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	1 cut(s)	199
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	199, 253
NlaIV	GGNNCC	2 cut(s)	79, 201
PfeI	GAWTC	2 cut(s)	108, 280
PkrI	GCNGC	3 cut(s)	210, 248, 290
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PshAI	GACNNNNGTC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	79, 201
PstNI	CAGNNNCTG	2 cut(s)	16, 221
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	3 cut(s)	227, 314, 344
RsaNI	GTAC	3 cut(s)	226, 313, 343
SatI	GCNGC	3 cut(s)	209, 247, 289
Sau3AI	GATC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	187
SetI	ASST	2 cut(s)	87, 191
SfaNI	GCATC	1 cut(s)	315
SfcI	CTRYAG	1 cut(s)	8
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	5 cut(s)	209, 213, 246, 289, 304
SspMI	CTAG	2 cut(s)	86, 180
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	56
TaqI	TCGA	1 cut(s)	159
TasI	AATT	1 cut(s)	137
TatI	WGTACW	2 cut(s)	225, 312
TauI	GCSGC	3 cut(s)	211, 249, 291
TfiI	GAWTC	2 cut(s)	108, 280
TscAI	CASTG	2 cut(s)	61, 290
TspRI	CASTG	2 cut(s)	61, 290
XapI	RAATTY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XspI	CTAG	2 cut(s)	86, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.