Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007379

Physical Location & Seq

Genomic Coordinates Forward (+)

16423919 .. 16425324

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGATCCAGCGCCCGAACCCGTTACTTACGTCTGCGGAGATTGTGGTCAAGAGAACACTTTGAAGTCTGGGGATGTGATCCAATGCAGAGAGTGTGGGTACCGTATTCTCTACAAGAAGCGTACCCGTAGAGTTGTTCAATACGAAGCTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006366 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

DNA_RNApol_7kD

Protein Analysis

51

Amino Acids

5.9

Weight (kDa)

8.43

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RPAB4	PF03604	10 - 41	2.1e-18	DNA directed RNA polymerase, 7 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53690 AT1G53690 AT5G41010
fragaria_vesca	FvH4_3g22950 FvH4_5g18480
malus_domestica	MD12G1077100.v1.1 MD14G1070900.v1.1 MD14G1071000.v1.1
prunus_persica	Prupe.4G215400_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.5G244400_v2.0.a1
pyrus_communis	pycom12g06260
rosa_chinensis	RchiOBHm_Chr5g0040221 RchiOBHm_Chr7g0177031
rosa_laevigata	RLG00000005562
rosa_roxburghii	Rroxscaffold_1G00041040
rosa_samantha	Rh5AG271300 Rh5CG307500 Rh5DG282800 Rh7AG002600 Rh7BG002900 Rh7CG002200
rosa_wichuraiana	Rw5G025370 Rw7G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	99
AciI	CCGC	1 cut(s)	36
AclWI	GGATC	2 cut(s)	12, 73
AfaI	GTAC	2 cut(s)	101, 124
AgsI	TTSAA	2 cut(s)	64, 140
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
AlwI	GGATC	2 cut(s)	12, 73
Asp718I	GGTACC	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	13
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	14
BmiI	GGNNCC	2 cut(s)	6, 101
BseGI	GGATG	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	4, 78
BspACI	CCGC	1 cut(s)	36
BspLI	GGNNCC	2 cut(s)	6, 101
BspPI	GGATC	2 cut(s)	12, 73
BspT107I	GGYRCC	1 cut(s)	99
BssMI	GATC	2 cut(s)	4, 78
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	79
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	2 cut(s)	7, 81
BstMBI	GATC	2 cut(s)	4, 78
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	13
Csp6I	GTAC	2 cut(s)	100, 123
CviJI	RGCY	1 cut(s)	149
CviKI_1	RGCY	1 cut(s)	149
CviQI	GTAC	2 cut(s)	100, 123
DpnI	GATC	2 cut(s)	6, 80
DpnII	GATC	2 cut(s)	4, 78
FokI	GGATG	1 cut(s)	86
GlaI	GCGC	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	14
HhaI	GCGC	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
Hpy188III	TCNNGA	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	30
HspAI	GCGC	1 cut(s)	11
KpnI	GGTACC	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	4, 78
LpnPI	CCDG	2 cut(s)	21, 54
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	2 cut(s)	6, 80
MboI	GATC	2 cut(s)	4, 78
MflI	RGATCY	1 cut(s)	4
NdeII	GATC	2 cut(s)	4, 78
NlaIV	GGNNCC	2 cut(s)	6, 101
PspN4I	GGNNCC	2 cut(s)	6, 101
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	101, 124
RsaNI	GTAC	2 cut(s)	100, 123
Sau3AI	GATC	2 cut(s)	4, 78
SetI	ASST	2 cut(s)	33, 151
SgeI	CNNG	7 cut(s)	20, 26, 32, 62, 81, 127, 138
SsiI	CCGC	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.