Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007379

Physical Location & Seq

Genomic Coordinates Forward (+)

195723 .. 196782

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG002900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGATCCCCAGCAGCCAGCAGAGCCGGTGTACTACATTTGTGGAGATTGCGGCATGGAGATCCCTTTGAAGCCAAACGATGTGATTCAGTGCCGCGAGTGCGGTTACCGCATCTTATACAAGAAGCGCACTCGTCGCAGAATGGTACGGCCAATTGTCAAGTCTGACTCTCGATTACTTGCTATGACATCTGGTTCCTTGATTATGATGAGGATGCCGTCATTGAATTTAGCATCATGTTATGCTGGCCTCCATCATCATGTGTTTGTCATAAAGAAATCTCCAATACTACACTATCAACGCAATTATCATAGACAAGTTGGTCCTCTTCCAATTTTGTTCAGTATGAGGCACGCTGAAGAAACCCTGCAGAGGATGGGCATTGCAAAACCGAATAAGGGCAAGTGTCGTGGTTTAGCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006366 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

DNA_RNApol_7kD

Protein Analysis

141

Amino Acids

16.26

Weight (kDa)

9.94

Isoelectric Point (pI)

57.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RPAB4	PF03604	12 - 43	1.1e-16	DNA directed RNA polymerase, 7 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53690 AT1G53690 AT5G41010
fragaria_vesca	FvH4_3g22950 FvH4_5g18480
malus_domestica	MD12G1077100.v1.1 MD14G1070900.v1.1 MD14G1071000.v1.1
prunus_persica	Prupe.4G215400_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.5G244400_v2.0.a1
pyrus_communis	pycom12g06260
rosa_chinensis	RchiOBHm_Chr5g0040221 RchiOBHm_Chr7g0177031
rosa_laevigata	RLG00000005562
rosa_roxburghii	Rroxscaffold_1G00041040
rosa_samantha	Rh5AG271300 Rh5CG307500 Rh5DG282800 Rh7AG002600 Rh7BG002900 Rh7CG002200
rosa_wichuraiana	Rw5G025370 Rw7G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	321
AccII	CGCG	1 cut(s)	96
AciI	CCGC	4 cut(s)	51, 94, 102, 109
AclWI	GGATC	2 cut(s)	12, 55
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	2 cut(s)	32, 147
AfiI	CCNNNNNNNGG	2 cut(s)	372, 398
AgsI	TTSAA	2 cut(s)	70, 226
AlwI	GGATC	2 cut(s)	12, 55
AoxI	GGCC	2 cut(s)	149, 247
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	323
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	261, 370
BceAI	ACGGC	2 cut(s)	164, 202
BfmI	CTRYAG	1 cut(s)	368
BisI	GCNGC	3 cut(s)	14, 52, 94
BlsI	GCNGC	3 cut(s)	15, 53, 95
Bme18I	GGWCC	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	323
BmiI	GGNNCC	2 cut(s)	6, 196
BmsI	GCATC	3 cut(s)	120, 204, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 398
Bse118I	RCCGGY	1 cut(s)	25
Bse3DI	GCAATG	2 cut(s)	381, 426
BseGI	GGATG	2 cut(s)	219, 381
BseLI	CCNNNNNNNGG	2 cut(s)	372, 398
BseMI	GCAATG	2 cut(s)	381, 426
BseXI	GCAGC	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	9
Bsh1236I	CGCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	151, 249
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	372, 398
BsnI	GGCC	2 cut(s)	151, 249
Bsp143I	GATC	2 cut(s)	4, 60
BspACI	CCGC	4 cut(s)	51, 94, 102, 109
BspANI	GGCC	2 cut(s)	151, 249
BspFNI	CGCG	1 cut(s)	96
BspLI	GGNNCC	2 cut(s)	6, 196
BspMAI	CTGCAG	1 cut(s)	372
BspPI	GGATC	2 cut(s)	12, 55
BsrDI	GCAATG	2 cut(s)	381, 426
BsrFI	RCCGGY	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	25
BssMI	GATC	2 cut(s)	4, 60
Bst6I	CTCTTC	1 cut(s)	333
BstC8I	GCNNGC	3 cut(s)	18, 247, 354
BstEII	GGTNACC	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	219, 381
BstFNI	CGCG	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	7, 63
BstMBI	GATC	2 cut(s)	4, 60
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 99, 108, 135
BstPI	GGTNACC	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	368
BstUI	CGCG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	2 cut(s)	4, 60
BstYI	RGATCY	2 cut(s)	4, 60
BsuRI	GGCC	2 cut(s)	151, 249
BtsCI	GGATG	2 cut(s)	219, 381
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	3 cut(s)	18, 247, 354
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	31, 146
CspCI	CAANNNNNGTGG	2 cut(s)	391, 426
CviAII	CATG	3 cut(s)	55, 237, 260
CviJI	RGCY	5 cut(s)	16, 25, 73, 151, 249
CviKI_1	RGCY	5 cut(s)	16, 25, 73, 151, 249
CviQI	GTAC	2 cut(s)	31, 146
DpnI	GATC	2 cut(s)	6, 62
DpnII	GATC	2 cut(s)	4, 60
DrdI	GACNNNNNNGTC	1 cut(s)	321
DseDI	GACNNNNNNGTC	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	149
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	378
Eco91I	GGTNACC	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	104
FaeI	CATG	3 cut(s)	58, 240, 263
FatI	CATG	3 cut(s)	54, 236, 259
Fnu4HI	GCNGC	3 cut(s)	14, 52, 94
FokI	GGATG	2 cut(s)	226, 388
Fsp4HI	GCNGC	3 cut(s)	14, 52, 94
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	3 cut(s)	14, 52, 94
GsaI	CCCAGC	1 cut(s)	13
HaeIII	GGCC	2 cut(s)	151, 249
HapII	CCGG	1 cut(s)	26
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	58, 240, 263
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	2 cut(s)	85, 167
HpaII	CCGG	1 cut(s)	26
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	171
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	138
HpyCH4V	TGCA	2 cut(s)	370, 386
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 99, 108, 135
Hsp92II	CATG	3 cut(s)	58, 240, 263
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	4, 60
LpnPI	CCDG	6 cut(s)	23, 30, 39, 177, 231, 380
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	3 cut(s)	120, 204, 242
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	6, 62
MboI	GATC	2 cut(s)	4, 60
MboII	GAAGA	2 cut(s)	320, 371
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	2 cut(s)	4, 60
MluCI	AATT	4 cut(s)	153, 226, 304, 333
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	5 cut(s)	204, 260, 336, 342, 366
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	96
MwoI	GCNNNNNNNGC	4 cut(s)	22, 99, 108, 135
NdeII	GATC	2 cut(s)	4, 60
NlaIII	CATG	3 cut(s)	58, 240, 263
NlaIV	GGNNCC	2 cut(s)	6, 196
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	15, 53, 95
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PspEI	GGTNACC	1 cut(s)	104
PspFI	CCCAGC	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	6, 196
PspPI	GGNCC	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	372
PsuI	RGATCY	2 cut(s)	4, 60
RsaI	GTAC	2 cut(s)	32, 147
RsaNI	GTAC	2 cut(s)	31, 146
RseI	CAYNNNNRTG	1 cut(s)	258
SatI	GCNGC	3 cut(s)	14, 52, 94
Sau3AI	GATC	2 cut(s)	4, 60
Sau96I	GGNCC	1 cut(s)	323
SchI	GAGTC	1 cut(s)	161
SfaNI	GCATC	3 cut(s)	120, 204, 242
SfcI	CTRYAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	4 cut(s)	153, 226, 304, 333
SsiI	CCGC	4 cut(s)	51, 94, 102, 109
TaqI	TCGA	1 cut(s)	172
TasI	AATT	4 cut(s)	153, 226, 304, 333
TatI	WGTACW	1 cut(s)	30
TauI	GCSGC	2 cut(s)	54, 96
TfiI	GAWTC	1 cut(s)	85
TscAI	CASTG	1 cut(s)	95
TseI	GCWGC	1 cut(s)	13
TspRI	CASTG	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	323
XapI	RAATTY	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.