Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007379

Physical Location & Seq

Genomic Coordinates Forward (+)

34914765 .. 34915980

Gene Structure 1216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGTCGTCGGCGCCACCGAATCCTCGTCCTCAGCCACCACAACAGAAAAGGGACCTCTTGTATGACTGCGGAGGTTGTGGGGAGGAAGTCCCATTGAGGCCCGGGGATAAGATTGAGTGCCCCCATTGCAATTACCCTGTTCTATTCAAGAAACGAACCCGTCGCATTGTGGAGTTTCAGGCACGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006366 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

DNA_RNApol_7kD

Protein Analysis

62

Amino Acids

7.12

Weight (kDa)

9.13

Isoelectric Point (pI)

97.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RPAB4	PF03604	21 - 52	1.5e-09	DNA directed RNA polymerase, 7 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53690 AT1G53690 AT5G41010
fragaria_vesca	FvH4_3g22950 FvH4_5g18480
malus_domestica	MD12G1077100.v1.1 MD14G1070900.v1.1 MD14G1071000.v1.1
prunus_persica	Prupe.4G215400_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.5G244400_v2.0.a1
pyrus_communis	pycom12g06260
rosa_chinensis	RchiOBHm_Chr5g0040221 RchiOBHm_Chr7g0177031
rosa_laevigata	RLG00000005562
rosa_roxburghii	Rroxscaffold_1G00041040
rosa_samantha	Rh5AG271300 Rh5CG307500 Rh5DG282800 Rh7AG002600 Rh7BG002900 Rh7CG002200
rosa_wichuraiana	Rw5G025370 Rw7G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AciI	CCGC	1 cut(s)	69
AcyI	GRCGYC	1 cut(s)	11
AgsI	TTSAA	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	13
AspS9I	GGNCC	2 cut(s)	52, 99
AsuC2I	CCSGG	2 cut(s)	102, 103
AvaI	CYCGRG	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	10
BbvCI	CCTCAGC	1 cut(s)	30
BcnI	CCSGG	2 cut(s)	102, 103
BfoI	RGCGCY	1 cut(s)	14
Bme1390I	CCNGG	2 cut(s)	102, 103
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	52, 99
BmiI	GGNNCC	2 cut(s)	12, 53
BmrFI	CCNGG	2 cut(s)	102, 103
Bpu10I	CCTNAGC	1 cut(s)	30
BpuMI	CCSGG	2 cut(s)	102, 103
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	101, 102
Bse3DI	GCAATG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	101, 102
BseMI	GCAATG	1 cut(s)	124
BseMII	CTCAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	122
BshFI	GGCC	1 cut(s)	100
BshNI	GGYRCC	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	65, 74
BsmFI	GGGAC	2 cut(s)	65, 74
BsnI	GGCC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	122
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	12, 53
BspT107I	GGYRCC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	101, 102
BssNI	GRCGYC	1 cut(s)	11
BstACI	GRCGYC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstSCI	CCNGG	2 cut(s)	100, 101
BstSLI	GKGCMC	1 cut(s)	122
BsuRI	GGCC	1 cut(s)	100
CfoI	GCGC	1 cut(s)	13
Cfr13I	GGNCC	2 cut(s)	52, 99
Cfr9I	CCCGGG	1 cut(s)	101
CviJI	RGCY	2 cut(s)	34, 100
CviKI_1	RGCY	2 cut(s)	34, 100
DdeI	CTNAG	1 cut(s)	30
DinI	GGCGCC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	101
EcoO109I	RGGNCCY	1 cut(s)	52
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
FaiI	YATR	1 cut(s)	63
FaqI	GGGAC	2 cut(s)	65, 74
GlaI	GCGC	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	148
Hpy99I	CGWCG	2 cut(s)	10, 165
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	184
Hsp92I	GRCGYC	1 cut(s)	11
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
LpnPI	CCDG	3 cut(s)	115, 150, 164
MaeII	ACGT	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	1 cut(s)	130
Mly113I	GGCGCC	1 cut(s)	11
MnlI	CCTC	6 cut(s)	33, 39, 65, 65, 76, 90
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	102, 103
MwoI	GCNNNNNNNGC	1 cut(s)	126
NarI	GGCGCC	1 cut(s)	11
NciI	CCSGG	2 cut(s)	102, 103
NlaIV	GGNNCC	2 cut(s)	12, 53
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	19
PluTI	GGCGCC	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
PspN4I	GGNNCC	2 cut(s)	12, 53
PspPI	GGNCC	2 cut(s)	52, 99
PspPPI	RGGWCCY	1 cut(s)	52
Sau96I	GGNCC	2 cut(s)	52, 99
ScrFI	CCNGG	2 cut(s)	102, 103
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	3 cut(s)	57, 76, 187
SfoI	GGCGCC	1 cut(s)	12
SgeI	CNNG	8 cut(s)	36, 70, 113, 114, 115, 149, 160, 171
SinI	GGWCC	1 cut(s)	52
SmaI	CCCGGG	1 cut(s)	103
Sse9I	AATT	1 cut(s)	130
SsiI	CCGC	1 cut(s)	69
SspDI	GGCGCC	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	100, 101
TaiI	ACGT	1 cut(s)	187
TasI	AATT	1 cut(s)	130
TfiI	GAWTC	1 cut(s)	19
TspMI	CCCGGG	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	52
XmaI	CCCGGG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.