Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007379

Physical Location & Seq

Genomic Coordinates Forward (+)

7802482 .. 7804819

Gene Structure 2338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1070900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGATCCTCAGCCAAAGCCAGTCTACTACATTTGTGGAAAATGTGGGTTGGAGGTTCAGTTGAAGCCCAACGACTCGATGCAGTGCCGCGACTGCGGTTACCATATTTTATACAAGAAGCGTGCTCGTCGTATTATTCAGCTTGAGGCGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006366 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

DNA_RNApol_7kD

Protein Analysis

52

Amino Acids

6.03

Weight (kDa)

9.27

Isoelectric Point (pI)

47.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RPAB4	PF03604	10 - 41	2.1e-14	DNA directed RNA polymerase, 7 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53690 AT1G53690 AT5G41010
fragaria_vesca	FvH4_3g22950 FvH4_5g18480
malus_domestica	MD12G1077100.v1.1 MD14G1070900.v1.1 MD14G1071000.v1.1
prunus_persica	Prupe.4G215400_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.5G244400_v2.0.a1
pyrus_communis	pycom12g06260
rosa_chinensis	RchiOBHm_Chr5g0040221 RchiOBHm_Chr7g0177031
rosa_laevigata	RLG00000005562
rosa_roxburghii	Rroxscaffold_1G00041040
rosa_samantha	Rh5AG271300 Rh5CG307500 Rh5DG282800 Rh7AG002600 Rh7BG002900 Rh7CG002200
rosa_wichuraiana	Rw5G025370 Rw7G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	2 cut(s)	90, 151
AciI	CCGC	2 cut(s)	88, 96
AclWI	GGATC	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	127
AlwI	GGATC	1 cut(s)	12
AspLEI	GCGC	2 cut(s)	151, 153
BamHI	GGATCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	127
BbvCI	CCTCAGC	1 cut(s)	9
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bse1I	ACTGG	1 cut(s)	20
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	20
BsePI	GCGCGC	1 cut(s)	149
Bsh1236I	CGCG	2 cut(s)	90, 151
BsiHKAI	GWGCWC	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	2 cut(s)	88, 96
BspCNI	CTCAG	1 cut(s)	22
BspFNI	CGCG	2 cut(s)	90, 151
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	20
BssHII	GCGCGC	1 cut(s)	149
BssMI	GATC	1 cut(s)	4
BstC8I	GCNNGC	2 cut(s)	123, 151
BstDEI	CTNAG	1 cut(s)	9
BstEII	GGTNACC	1 cut(s)	98
BstFNI	CGCG	2 cut(s)	90, 151
BstHHI	GCGC	2 cut(s)	151, 153
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	2 cut(s)	93, 148
BstPI	GGTNACC	1 cut(s)	98
BstUI	CGCG	2 cut(s)	90, 151
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsI	GCAGTG	1 cut(s)	89
BtsIMutI	CAGTG	1 cut(s)	89
Cac8I	GCNNGC	2 cut(s)	123, 151
CfoI	GCGC	2 cut(s)	151, 153
CviJI	RGCY	4 cut(s)	13, 19, 67, 142
CviKI_1	RGCY	4 cut(s)	13, 19, 67, 142
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco91I	GGTNACC	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	98
FaiI	YATR	2 cut(s)	105, 112
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
GlaI	GCGC	2 cut(s)	150, 152
GluI	GCNGC	1 cut(s)	88
HhaI	GCGC	2 cut(s)	151, 153
Hin6I	GCGC	2 cut(s)	149, 151
HinP1I	GCGC	2 cut(s)	149, 151
HinfI	GANTC	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	132
HpyCH4V	TGCA	1 cut(s)	82
HpyF10VI	GCNNNNNNNGC	2 cut(s)	93, 148
HpyF3I	CTNAG	1 cut(s)	9
HspAI	GCGC	2 cut(s)	149, 151
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	1 cut(s)	33
LweI	GCATC	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	3 cut(s)	18, 46, 139
MvnI	CGCG	2 cut(s)	90, 151
MwoI	GCNNNNNNNGC	2 cut(s)	93, 148
NdeII	GATC	1 cut(s)	4
NlaIV	GGNNCC	1 cut(s)	6
PauI	GCGCGC	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PspEI	GGTNACC	1 cut(s)	98
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
PteI	GCGCGC	1 cut(s)	149
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	2 cut(s)	57, 144
SfaNI	GCATC	1 cut(s)	69
SgeI	CNNG	6 cut(s)	32, 88, 101, 127, 134, 138
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SsiI	CCGC	2 cut(s)	88, 96
TaqI	TCGA	1 cut(s)	77
TauI	GCSGC	1 cut(s)	90
TscAI	CASTG	1 cut(s)	89
TspRI	CASTG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.