Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007379

Physical Location & Seq

Genomic Coordinates Forward (+)

6364491 .. 6364929

Gene Structure 439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGATCCTCCGCCGCCAGAGGCCGTCTACTACATCTGTGGAGATTGTGGGATGGAGGTGCAGCTGAAATCCAACGACGTGATTCAGTGCCGCGAGTGCGGTTACCGTATCTTATACAAGAAGCGTACTCGCCGCAGTAAGTCTCGATATCCTCATATGCTCTTATTGTTGCAATATTGGTTGATTTCTCCAAAAGTTGATTATTTGAATATATTCGGGGATTGGGTAAATACCCAATTATCAGTAATCGATTTCGGATTGACAAATGTGGATTCTCTTGATTATTCGAACGGTAGAGGGAGGCGAATTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000418 GO:0000419 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005666 GO:0005730 GO:0005736 GO:0006139 GO:0006351 GO:0006360 GO:0006366 GO:0006383 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016591 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044452 GO:0044464 GO:0046483 GO:0055029 GO:0061695 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05016 ko05169 map00230 map00240 map01100 map03020 map04623 map05016 map05169

Pfam Domains

Protein Families

DNA_RNApol_7kD

Protein Analysis

105

Amino Acids

12.21

Weight (kDa)

8.72

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_RPAB4	PF03604	11 - 42	1.5e-17	DNA directed RNA polymerase, 7 kDa subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007379)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53690 AT1G53690 AT5G41010
fragaria_vesca	FvH4_3g22950 FvH4_5g18480
malus_domestica	MD12G1077100.v1.1 MD14G1070900.v1.1 MD14G1071000.v1.1
prunus_persica	Prupe.4G215400_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.4G246000_v2.0.a1 Prupe.5G244400_v2.0.a1
pyrus_communis	pycom12g06260
rosa_chinensis	RchiOBHm_Chr5g0040221 RchiOBHm_Chr7g0177031
rosa_laevigata	RLG00000005562
rosa_roxburghii	Rroxscaffold_1G00041040
rosa_samantha	Rh5AG271300 Rh5CG307500 Rh5DG282800 Rh7AG002600 Rh7BG002900 Rh7CG002200
rosa_wichuraiana	Rw5G025370 Rw7G000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	1 cut(s)	93
AciI	CCGC	5 cut(s)	11, 14, 91, 99, 133
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	306
AfaI	GTAC	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	208
AjiI	CACGTC	1 cut(s)	79
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	212
AsuII	TTCGAA	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	1 cut(s)	46
BceAI	ACGGC	1 cut(s)	8
BcoDI	GTCTC	1 cut(s)	147
BisI	GCNGC	4 cut(s)	14, 62, 91, 133
BlsI	GCNGC	4 cut(s)	15, 63, 92, 134
BmgBI	CACGTC	1 cut(s)	79
BmiI	GGNNCC	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	287
Bsa29I	ATCGAT	1 cut(s)	249
BseCI	ATCGAT	1 cut(s)	249
BseGI	GGATG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	73
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	1 cut(s)	23
BshVI	ATCGAT	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	23
Bsp119I	TTCGAA	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	5 cut(s)	11, 14, 91, 99, 133
BspANI	GGCC	1 cut(s)	23
BspDI	ATCGAT	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	287
BssMI	GATC	1 cut(s)	4
Bst4CI	ACNGT	2 cut(s)	107, 293
BstBI	TTCGAA	1 cut(s)	287
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstPI	GGTNACC	1 cut(s)	101
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	23
BsuTUI	ATCGAT	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	1 cut(s)	92
ClaI	ATCGAT	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	126
CviJI	RGCY	2 cut(s)	23, 64
CviKI_1	RGCY	2 cut(s)	23, 64
CviQI	GTAC	1 cut(s)	126
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco32I	GATATC	1 cut(s)	149
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
EcoRV	GATATC	1 cut(s)	149
FaiI	YATR	4 cut(s)	115, 156, 158, 212
FauNDI	CATATG	1 cut(s)	156
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	4 cut(s)	14, 62, 91, 133
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	4 cut(s)	14, 62, 91, 133
GluI	GCNGC	4 cut(s)	14, 62, 91, 133
HaeIII	GGCC	1 cut(s)	23
HinfI	GANTC	2 cut(s)	82, 272
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	257
Hpy188III	TCNNGA	2 cut(s)	144, 278
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	2 cut(s)	107, 293
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	2 cut(s)	61, 172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpySE526I	ACGT	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	1 cut(s)	30
Lsp1109I	GCAGC	1 cut(s)	73
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	2 cut(s)	236, 306
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	6 cut(s)	13, 18, 49, 162, 290, 294
MroXI	GAANNNNTTC	1 cut(s)	212
MspA1I	CMGCKG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	96
NdeI	CATATG	1 cut(s)	156
NdeII	GATC	1 cut(s)	4
NlaIV	GGNNCC	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	82, 272
PkrI	GCNGC	4 cut(s)	15, 63, 92, 134
PspEI	GGTNACC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SatI	GCNGC	4 cut(s)	14, 62, 91, 133
Sau3AI	GATC	1 cut(s)	4
SetI	ASST	3 cut(s)	60, 66, 81
SfuI	TTCGAA	1 cut(s)	287
SgeI	CNNG	9 cut(s)	29, 91, 104, 106, 130, 141, 156, 229, 290
Sse9I	AATT	2 cut(s)	236, 306
SsiI	CCGC	5 cut(s)	11, 14, 91, 99, 133
SspI	AATATT	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	107, 293
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	145, 249, 287
TasI	AATT	2 cut(s)	236, 306
TauI	GCSGC	3 cut(s)	16, 93, 135
TfiI	GAWTC	2 cut(s)	82, 272
TscAI	CASTG	1 cut(s)	92
TseI	GCWGC	1 cut(s)	61
TspRI	CASTG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	306
XmiI	GTMKAC	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.