Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005031

Physical Location & Seq

Genomic Coordinates Reverse (-)

20170715 .. 20173949

Gene Structure 3235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGTGGCCGTGGGAACTAAGATCTATATCTTTGGAGGCCGCGATGAGAACCGCAACTTCGAAAACTTTCGCTCCTACGATACGGTGACATCCGAGTGGACATTCCTGACGAAGCTTGATGAGGTGGGAGGACCCGAGGCTCGTACTTTCCATTCGATGGCTTCGGATGAAAACCATGTGTATGTATTCGGTGGGGTGAGCAAAGGCGGTACTATGAATACTCCCACGCGGTTCAGGACAATCGAGGCGTATAACATTGCTGATGGGAAATGGGCTCAGCTACCGGATCCAGGAGATAACTTCGAGAAAAGAGGAGGAGCGGGATTCGCTGTGGTACAAGGGAAGATTTGGGTGGTTTATGGGTTTGCGACCTCGATTGTGCCCGGAGGCAAAGATGACTATGAGTCTAATGCTGTGCAATTCTATGATCCGGCTTCCAAAAAGTGGACCGAAGTAGAGACTACAGGAGCGAAACCTTCCGCAAGGAGCGTGTTTGCCCATGCGGTAGTGGGAAAGTATATAATAATATTTGCAGGTGAGGTATGGCCTGATCTCAATGGGCATTATGGTCCCGGGACGCTGTCCAATGAGGGATATGCGTTGGACACCGAGACACTGGTGTGGGAAAAGTTGGGAGAAGAAGGTGCACCAGCCATACCACGAGGTTGGACTGCCTATACTGCTGCCACTGTCGATGGAAAGAATGGCCTCCTCATGCATGGCGGAAAGCTTCCGACCAACGAGCGAACTGATGATCTCTACTTCTATGCGGTCAATTCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010150 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0030234 GO:0032501 GO:0032502 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050790 GO:0050896 GO:0051704 GO:0051707 GO:0065007 GO:0065009 GO:0071704 GO:0090693 GO:0098542 GO:0098772 GO:0099402 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_6

Protein Analysis

261

Amino Acids

28.53

Weight (kDa)

5.1

Isoelectric Point (pI)

21.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_ATRN-LZTR1	PF24981	7 - 177	2.8e-22	Attractin/LZTR1 beta-propeller
Kelch_HCF	PF13854	7 - 261	1.7e-18	Host cell factor, Kelch-repeats domain
Beta-prop_FBX42	PF13415	8 - 113	3.9e-15	FBX42, beta-propeller domain
Kelch_1	PF01344	22 - 67	2.2e-06	Kelch motif
Kelch_KLHDC2_KLHL20_DRC7	PF24681	26 - 259	1.3e-52	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_1	PF01344	76 - 118	1.2e-09	Kelch motif
Beta-prop_FBX42	PF13415	80 - 148	3.2e-08	FBX42, beta-propeller domain
Kelch_FKB95	PF25210	80 - 199	4.1e-09	FKB95, Kelch-repeats domain
Kelch_1	PF01344	127 - 177	8.3e-08	Kelch motif
Beta-prop_FBX42	PF13415	128 - 339	6.5e-23	FBX42, beta-propeller domain
Beta-prop_ATRN-LZTR1	PF24981	210 - 339	1.7e-08	Attractin/LZTR1 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54040 AT1G54040 AT1G54040 AT2G33070 AT2G33070 AT2G33070 AT3G07720 AT3G16390 AT3G16390 AT3G16400 AT3G16400 AT3G16410
fragaria_vesca	FvH4_6g40583
malus_domestica	MD09G1127800.v1.1 MD17G1117500.v1.1
prunus_persica	Prupe.3G197100_v2.0.a1
pyrus_communis	pycom09g05160 pycom17g10810
rosa_chinensis	RchiOBHm_Chr2g0155891
rosa_laevigata	RLG00000020873
rosa_multiflora	Rmu_co8129152.1_g000001 Rmu_sc0003417.1_g000024
rosa_roxburghii	Rroxscaffold_2G00093420
rosa_rugosa	Rorug02G0450600
rosa_samantha	Rh2AG517200 Rh2BG528000 Rh2CG501900 Rh2DG537200
rosa_wichuraiana	Rw2G042530 Rw2G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	524
Acc36I	ACCTGC	1 cut(s)	524
AccB7I	CCANNNNNTGG	2 cut(s)	157, 444
AccBSI	CCGCTC	1 cut(s)	320
AccII	CGCG	2 cut(s)	42, 229
AciI	CCGC	9 cut(s)	40, 52, 207, 229, 320, 480, 503, 723, 770
AclWI	GGATC	3 cut(s)	281, 294, 422
AcoI	YGGCCR	1 cut(s)	6
AfaI	GTAC	3 cut(s)	145, 211, 336
AfiI	CCNNNNNNNGG	3 cut(s)	157, 290, 444
AhdI	GACNNNNNGTC	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	289
AleI	CACNNNNGTG	1 cut(s)	619
AluBI	AGCT	4 cut(s)	115, 280, 730, 782
AluI	AGCT	4 cut(s)	115, 280, 730, 782
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	2 cut(s)	452, 605
Alw44I	GTGCAC	1 cut(s)	645
AlwI	GGATC	3 cut(s)	281, 294, 422
Ama87I	CYCGRG	2 cut(s)	134, 572
AoxI	GGCC	4 cut(s)	6, 37, 545, 706
ApaLI	GTGCAC	1 cut(s)	645
ApeKI	GCWGC	1 cut(s)	683
Asp700I	GAANNNNTTC	1 cut(s)	66
AspS9I	GGNCC	3 cut(s)	131, 447, 569
AsuC2I	CCSGG	3 cut(s)	384, 573, 574
AsuHPI	GGTGA	3 cut(s)	97, 208, 548
AsuII	TTCGAA	1 cut(s)	60
AvaI	CYCGRG	2 cut(s)	134, 572
AvaII	GGWCC	3 cut(s)	131, 447, 569
BaeGI	GKGCMC	2 cut(s)	384, 649
BamHI	GGATCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	277
BauI	CACGAG	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	3 cut(s)	151, 257, 689
BciT130I	CCWGG	1 cut(s)	291
BcnI	CCSGG	3 cut(s)	384, 573, 574
BcoDI	GTCTC	2 cut(s)	452, 605
BfmI	CTRYAG	1 cut(s)	462
BfuAI	ACCTGC	1 cut(s)	524
BglII	AGATCT	1 cut(s)	21
BisI	GCNGC	2 cut(s)	40, 684
BlpI	GCTNAGC	1 cut(s)	276
BlsI	GCNGC	2 cut(s)	41, 685
Bme1390I	CCNGG	4 cut(s)	291, 384, 573, 574
Bme18I	GGWCC	3 cut(s)	131, 447, 569
BmeRI	GACNNNNNGTC	1 cut(s)	403
BmeT110I	CYCGRG	2 cut(s)	134, 572
BmgT120I	GGNCC	3 cut(s)	131, 447, 569
BmiI	GGNNCC	3 cut(s)	133, 288, 571
BmrFI	CCNGG	4 cut(s)	291, 384, 573, 574
Bpu1102I	GCTNAGC	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	60
BpuMI	CCSGG	3 cut(s)	384, 573, 574
BsaBI	GATNNNNATC	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	9, 135, 572
BsaWI	WCCGGW	1 cut(s)	283
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 290, 444
Bse1I	ACTGG	1 cut(s)	621
Bse3DI	GCAATG	1 cut(s)	255
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	3 cut(s)	9, 135, 572
BseGI	GGATG	2 cut(s)	89, 172
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	3 cut(s)	157, 290, 444
BseMI	GCAATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	290
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	3 cut(s)	327, 330, 701
BseSI	GKGCMC	2 cut(s)	384, 649
BseXI	GCAGC	1 cut(s)	670
Bsh1236I	CGCG	2 cut(s)	42, 229
BshFI	GGCC	4 cut(s)	8, 39, 547, 708
BsiHKAI	GWGCWC	1 cut(s)	649
BsiHKCI	CYCGRG	2 cut(s)	134, 572
BsiSI	CCGG	4 cut(s)	284, 384, 431, 573
BslFI	GGGAC	2 cut(s)	555, 589
BslI	CCNNNNNNNGG	3 cut(s)	157, 290, 444
BsmAI	GTCTC	2 cut(s)	452, 605
BsmFI	GGGAC	2 cut(s)	555, 589
BsnI	GGCC	4 cut(s)	8, 39, 547, 708
BsoBI	CYCGRG	2 cut(s)	134, 572
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	3 cut(s)	277, 384, 649
Bsp143I	GATC	5 cut(s)	21, 286, 427, 550, 754
Bsp1720I	GCTNAGC	1 cut(s)	276
BspACI	CCGC	9 cut(s)	40, 52, 207, 229, 320, 480, 503, 723, 770
BspANI	GGCC	4 cut(s)	8, 39, 547, 708
BspCNI	CTCAG	1 cut(s)	289
BspFNI	CGCG	2 cut(s)	42, 229
BspLI	GGNNCC	3 cut(s)	133, 288, 571
BspMI	ACCTGC	1 cut(s)	524
BspPI	GGATC	3 cut(s)	281, 294, 422
BspT104I	TTCGAA	1 cut(s)	60
BsrBI	CCGCTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	621
BssECI	CCNNGG	3 cut(s)	9, 135, 572
BssMI	GATC	5 cut(s)	21, 286, 427, 550, 754
BssSI	CACGAG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	660
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	85, 691
BstBI	TTCGAA	1 cut(s)	60
BstDEI	CTNAG	2 cut(s)	18, 276
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	89, 172
BstFNI	CGCG	2 cut(s)	42, 229
BstKTI	GATC	5 cut(s)	24, 289, 430, 553, 757
BstMAI	GTCTC	2 cut(s)	452, 605
BstMBI	GATC	5 cut(s)	21, 286, 427, 550, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	326, 680
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	4 cut(s)	289, 382, 571, 572
BstSFI	CTRYAG	1 cut(s)	462
BstSLI	GKGCMC	2 cut(s)	384, 649
BstUI	CGCG	2 cut(s)	42, 229
BstV1I	GCAGC	1 cut(s)	670
BstX2I	RGATCY	2 cut(s)	21, 286
BstXI	CCANNNNNNTGG	1 cut(s)	666
BstYI	RGATCY	2 cut(s)	21, 286
BsuRI	GGCC	4 cut(s)	8, 39, 547, 708
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	89, 172
BtsIMutI	CAGTG	2 cut(s)	614, 687
BveI	ACCTGC	1 cut(s)	524
Cfr13I	GGNCC	3 cut(s)	131, 447, 569
Cfr9I	CCCGGG	1 cut(s)	572
CseI	GACGC	1 cut(s)	586
Csp6I	GTAC	3 cut(s)	144, 210, 335
CviAII	CATG	4 cut(s)	176, 500, 715, 719
CviQI	GTAC	3 cut(s)	144, 210, 335
DdeI	CTNAG	2 cut(s)	18, 276
DpnI	GATC	5 cut(s)	23, 288, 429, 552, 756
DpnII	GATC	5 cut(s)	21, 286, 427, 550, 754
DriI	GACNNNNNGTC	1 cut(s)	403
EaeI	YGGCCR	1 cut(s)	6
Eam1105I	GACNNNNNGTC	1 cut(s)	403
EciI	GGCGGA	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	277
Eco47I	GGWCC	3 cut(s)	131, 447, 569
Eco88I	CYCGRG	2 cut(s)	134, 572
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	277
FaeI	CATG	4 cut(s)	179, 503, 718, 722
FaqI	GGGAC	2 cut(s)	555, 589
FatI	CATG	4 cut(s)	175, 499, 714, 718
FauI	CCCGC	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	40, 684
FokI	GGATG	2 cut(s)	76, 179
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	2 cut(s)	40, 684
GluI	GCNGC	2 cut(s)	40, 684
HaeIII	GGCC	4 cut(s)	8, 39, 547, 708
HapII	CCGG	4 cut(s)	284, 384, 431, 573
HgaI	GACGC	1 cut(s)	586
Hin1II	CATG	4 cut(s)	179, 503, 718, 722
HindIII	AAGCTT	2 cut(s)	113, 728
HinfI	GANTC	2 cut(s)	324, 404
HpaII	CCGG	4 cut(s)	284, 384, 431, 573
HphI	GGTGA	3 cut(s)	97, 208, 548
Hpy166II	GTNNAC	3 cut(s)	99, 447, 647
Hpy188I	TCNGA	3 cut(s)	94, 166, 735
Hpy188III	TCNNGA	3 cut(s)	106, 235, 304
Hpy8I	GTNNAC	3 cut(s)	99, 447, 647
HpyAV	CCTTC	2 cut(s)	486, 635
HpyCH4III	ACNGT	2 cut(s)	85, 691
HpyCH4V	TGCA	4 cut(s)	418, 533, 647, 718
HpyF10VI	GCNNNNNNNGC	2 cut(s)	326, 680
HpyF3I	CTNAG	2 cut(s)	18, 276
Hsp92II	CATG	4 cut(s)	179, 503, 718, 722
Kzo9I	GATC	5 cut(s)	21, 286, 427, 550, 754
LmnI	GCTCC	4 cut(s)	77, 317, 467, 486
Lsp1109I	GCAGC	1 cut(s)	670
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	5 cut(s)	23, 288, 429, 552, 756
MbiI	CCGCTC	1 cut(s)	320
MboI	GATC	5 cut(s)	21, 286, 427, 550, 754
MboII	GAAGA	2 cut(s)	355, 650
MflI	RGATCY	2 cut(s)	21, 286
MhlI	GDGCHC	3 cut(s)	277, 384, 649
MluCI	AATT	2 cut(s)	419, 775
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	3 cut(s)	582, 647, 758
Mph1103I	ATGCAT	1 cut(s)	720
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	1 cut(s)	784
MslI	CAYNNNNRTG	3 cut(s)	94, 180, 619
MspI	CCGG	4 cut(s)	284, 384, 431, 573
MspR9I	CCNGG	4 cut(s)	291, 384, 573, 574
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	2 cut(s)	42, 229
MwoI	GCNNNNNNNGC	2 cut(s)	326, 680
NciI	CCSGG	3 cut(s)	384, 573, 574
NdeII	GATC	5 cut(s)	21, 286, 427, 550, 754
NlaIII	CATG	4 cut(s)	179, 503, 718, 722
NlaIV	GGNNCC	3 cut(s)	133, 288, 571
NmuCI	GTSAC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	720
NspV	TTCGAA	1 cut(s)	60
OliI	CACNNNNGTG	1 cut(s)	619
PaqCI	CACCTGC	1 cut(s)	524
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	324
PflFI	GACNNNGTC	1 cut(s)	580
PflMI	CCANNNNNTGG	2 cut(s)	157, 444
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	41, 685
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
PpuMI	RGGWCCY	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	133, 288, 571
PspPI	GGNCC	3 cut(s)	131, 447, 569
PspPPI	RGGWCCY	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	21, 286
PsyI	GACNNNGTC	1 cut(s)	580
RsaI	GTAC	3 cut(s)	145, 211, 336
RsaNI	GTAC	3 cut(s)	144, 210, 335
RseI	CAYNNNNRTG	3 cut(s)	94, 180, 619
SaqAI	TTAA	1 cut(s)	784
SatI	GCNGC	2 cut(s)	40, 684
Sau3AI	GATC	5 cut(s)	21, 286, 427, 550, 754
Sau96I	GGNCC	3 cut(s)	131, 447, 569
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	4 cut(s)	291, 384, 573, 574
SduI	GDGCHC	3 cut(s)	277, 384, 649
SfcI	CTRYAG	1 cut(s)	462
SfuI	TTCGAA	1 cut(s)	60
SinI	GGWCC	3 cut(s)	131, 447, 569
SmaI	CCCGGG	1 cut(s)	574
SmiMI	CAYNNNNRTG	3 cut(s)	94, 180, 619
Sse9I	AATT	2 cut(s)	419, 775
SsiI	CCGC	9 cut(s)	40, 52, 207, 229, 320, 480, 503, 723, 770
SspI	AATATT	1 cut(s)	528
StyD4I	CCNGG	4 cut(s)	289, 382, 571, 572
TaaI	ACNGT	2 cut(s)	85, 691
TaqI	TCGA	6 cut(s)	60, 155, 243, 303, 374, 693
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	2 cut(s)	419, 775
TauI	GCSGC	1 cut(s)	42
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	784
Tru9I	TTAA	1 cut(s)	784
TscAI	CASTG	2 cut(s)	621, 694
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	183, 230
TspMI	CCCGGG	1 cut(s)	572
TspRI	CASTG	2 cut(s)	621, 694
Tth111I	GACNNNGTC	1 cut(s)	580
Van91I	CCANNNNNTGG	2 cut(s)	157, 444
VneI	GTGCAC	1 cut(s)	645
VpaK11BI	GGWCC	3 cut(s)	131, 447, 569
XmaI	CCCGGG	1 cut(s)	572
XmnI	GAANNNNTTC	1 cut(s)	66
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.