Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005031

Physical Location & Seq

Genomic Coordinates Forward (+)

20759436 .. 20761416

Gene Structure 1981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G197100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCTCTGGTGCAAGGCAAATGGATCAAGCTTGATCAAAAGGGAACTGGGCCTGGAGCAAGAAGCTCACATGCCATTACCCTAGTAGGACAGAAGGGCTATGTTTTTGGTGGCGAATTCACGCCACGTGTCCCCGTCGACAACAAGCTCCACGTGTTTGACCTCGAGGAGCTGACGTGGTCTGTGATCGAGGGAACCGGTGATGTCCCGCCGCCACGTGTTGGTGTGACATTGGTAGCTGTTGGACAAATCATCTATGTTTTTGGTGGTAGGGACTATGACCACAACGAGCTCAATGAGCTCTATTCCTTTGACACATCTACAAACAACTGGACCCTAATTTCTAGTGGGGACATTGGGCCCCCTCATAGGAGCTACCATTCCGTGACCGCCGATGACCGCCATGTGTATATTTTTGGCGGCTGCGGTGTGGCCGGCCGCCTTAATGATCTATGGGCCTATGATGTGGTTGATAAAAAATGGATCCAATACCCAAAACCGGGTGACAATTTGAAGGGGAGAGGCGGGCCTGGCCTGCTAGTGGTCGAAGGGAAAATATGGGTTGTGTATGGCTTTGCTGGAGAGGAAGCTGACGATGTGCACACCTTCGACCCAGTCCATGGTGAGTGGACCCAAATTGAGACAAGTGGCGAGAAACCAACGGCTCGGAGTGTATTTTCTACGGTAGCAATCGGAAAATACATAGTTATATACGGTGGGGAAGTGGACCCTAGTGACTTGGGCCACATGGGTGCCGGGAAATTTGCTGCTGAGGTCTATGCACTGGACACGGAGACGTTGGTGTGGAAGAAGTGGGATGATGGGCTGGGCTCGGGTCATCATCCCGGGCCTCGCGGGTGGTCTGCATTTGCCCGCGGGCAGTGGGATGGAGAAGTGGGCCTTTTGGTGTATGGCGGGAACTCACCAACTAATGATCGCCTTGGTGATATTTTCTTCTTCACTCCTTATTTGGAAGCAAATGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_3 Kelch_4

Protein Analysis

330

Amino Acids

35.87

Weight (kDa)

5.17

Isoelectric Point (pI)

15.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54040 AT1G54040 AT1G54040 AT2G33070 AT2G33070 AT2G33070 AT3G07720 AT3G16390 AT3G16390 AT3G16400 AT3G16400 AT3G16410
fragaria_vesca	FvH4_6g40583
malus_domestica	MD09G1127800.v1.1 MD17G1117500.v1.1
prunus_persica	Prupe.3G197100_v2.0.a1
pyrus_communis	pycom09g05160 pycom17g10810
rosa_chinensis	RchiOBHm_Chr2g0155891
rosa_laevigata	RLG00000020873
rosa_multiflora	Rmu_co8129152.1_g000001 Rmu_sc0003417.1_g000024
rosa_roxburghii	Rroxscaffold_2G00093420
rosa_rugosa	Rorug02G0450600
rosa_samantha	Rh2AG517200 Rh2BG528000 Rh2CG501900 Rh2DG537200
rosa_wichuraiana	Rw2G042530 Rw2G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	752
AccB7I	CCANNNNNTGG	2 cut(s)	221, 620
AccI	GTMKAC	1 cut(s)	138
AccII	CGCG	2 cut(s)	855, 876
AclWI	GGATC	3 cut(s)	32, 478, 491
AcoI	YGGCCR	2 cut(s)	432, 436
AcsI	RAATTY	2 cut(s)	116, 761
AcvI	CACGTG	3 cut(s)	128, 154, 218
AfiI	CCNNNNNNNGG	6 cut(s)	221, 369, 499, 500, 541, 620
AflIII	ACRYGT	3 cut(s)	127, 153, 217
AgeI	ACCGGT	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	514
AjiI	CACGTC	1 cut(s)	177
AjnI	CCWGG	2 cut(s)	52, 529
AleI	CACNNNNGTG	1 cut(s)	750
AluBI	AGCT	9 cut(s)	31, 66, 148, 172, 239, 292, 301, 375, 590
AluI	AGCT	9 cut(s)	31, 66, 148, 172, 239, 292, 301, 375, 590
Alw21I	GWGCWC	3 cut(s)	294, 303, 603
Alw26I	GTCTC	2 cut(s)	635, 788
Alw44I	GTGCAC	1 cut(s)	599
AlwI	GGATC	3 cut(s)	32, 478, 491
Ama87I	CYCGRG	3 cut(s)	164, 832, 845
ApaI	GGGCCC	1 cut(s)	363
ApaLI	GTGCAC	1 cut(s)	599
ApeKI	GCWGC	2 cut(s)	423, 767
ApoI	RAATTY	2 cut(s)	116, 761
AsiGI	ACCGGT	1 cut(s)	197
AsuC2I	CCSGG	4 cut(s)	501, 757, 846, 847
AsuHPI	GGTGA	5 cut(s)	212, 515, 635, 915, 956
AvaI	CYCGRG	3 cut(s)	164, 832, 845
AvaII	GGWCC	3 cut(s)	333, 630, 727
BaeGI	GKGCMC	2 cut(s)	363, 603
BamHI	GGATCC	1 cut(s)	483
BanI	GGYRCC	1 cut(s)	752
BanII	GRGCYC	4 cut(s)	294, 303, 363, 833
BbrPI	CACGTG	3 cut(s)	128, 154, 218
Bbv12I	GWGCWC	3 cut(s)	294, 303, 603
BbvCI	CCTCAGC	1 cut(s)	771
BbvI	GCAGC	2 cut(s)	410, 754
BccI	CCATC	2 cut(s)	815, 881
BceAI	ACGGC	1 cut(s)	678
BciT130I	CCWGG	2 cut(s)	54, 531
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	4 cut(s)	501, 757, 846, 847
BcoDI	GTCTC	2 cut(s)	635, 788
BfaI	CTAG	4 cut(s)	83, 345, 539, 732
BisI	GCNGC	5 cut(s)	212, 421, 424, 439, 768
BlsI	GCNGC	5 cut(s)	213, 422, 425, 440, 769
Bme1390I	CCNGG	6 cut(s)	54, 501, 531, 757, 846, 847
Bme18I	GGWCC	3 cut(s)	333, 630, 727
BmeT110I	CYCGRG	3 cut(s)	164, 832, 845
BmgBI	CACGTC	1 cut(s)	177
BmiI	GGNNCC	8 cut(s)	196, 335, 361, 362, 485, 632, 729, 754
BmrFI	CCNGG	6 cut(s)	54, 501, 531, 757, 846, 847
BmrI	ACTGGG	2 cut(s)	57, 608
BmuI	ACTGGG	2 cut(s)	57, 608
BpmI	CTGGAG	2 cut(s)	75, 600
Bpu10I	CCTNAGC	1 cut(s)	771
BpuMI	CCSGG	4 cut(s)	501, 757, 846, 847
BsaAI	YACGTR	3 cut(s)	128, 154, 218
BsaJI	CCNNGG	4 cut(s)	619, 845, 874, 940
BsaWI	WCCGGW	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	6 cut(s)	221, 369, 499, 500, 541, 620
Bse118I	RCCGGY	2 cut(s)	197, 434
Bse1I	ACTGG	4 cut(s)	52, 335, 614, 789
BseBI	CCWGG	2 cut(s)	54, 531
BseDI	CCNNGG	4 cut(s)	619, 845, 874, 940
BseGI	GGATG	3 cut(s)	823, 841, 892
BseLI	CCNNNNNNNGG	6 cut(s)	221, 369, 499, 500, 541, 620
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	4 cut(s)	52, 335, 614, 789
BseRI	GAGGAG	1 cut(s)	182
BseSI	GKGCMC	2 cut(s)	363, 603
BseX3I	CGGCCG	1 cut(s)	436
BseXI	GCAGC	2 cut(s)	410, 754
BseYI	CCCAGC	1 cut(s)	826
Bsh1236I	CGCG	2 cut(s)	855, 876
Bsh1285I	CGRYCG	1 cut(s)	439
BshNI	GGYRCC	1 cut(s)	752
BshTI	ACCGGT	1 cut(s)	197
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	3 cut(s)	294, 303, 603
BsiHKCI	CYCGRG	3 cut(s)	164, 832, 845
BsiSI	CCGG	5 cut(s)	198, 435, 500, 756, 846
BslFI	GGGAC	4 cut(s)	116, 191, 287, 365
BslI	CCNNNNNNNGG	6 cut(s)	221, 369, 499, 500, 541, 620
BsmAI	GTCTC	2 cut(s)	635, 788
BsmBI	CGTCTC	1 cut(s)	788
BsmFI	GGGAC	4 cut(s)	116, 191, 287, 365
BsoBI	CYCGRG	3 cut(s)	164, 832, 845
Bsp120I	GGGCCC	1 cut(s)	359
Bsp1286I	GDGCHC	5 cut(s)	294, 303, 363, 603, 833
Bsp143I	GATC	6 cut(s)	24, 34, 186, 448, 483, 934
Bsp19I	CCATGG	1 cut(s)	619
BspCNI	CTCAG	1 cut(s)	763
BspFNI	CGCG	2 cut(s)	855, 876
BspLI	GGNNCC	8 cut(s)	196, 335, 361, 362, 485, 632, 729, 754
BspPI	GGATC	3 cut(s)	32, 478, 491
BspT107I	GGYRCC	1 cut(s)	752
BsrFI	RCCGGY	2 cut(s)	197, 434
BsrI	ACTGG	4 cut(s)	52, 335, 614, 789
BssAI	RCCGGY	2 cut(s)	197, 434
BssECI	CCNNGG	4 cut(s)	619, 845, 874, 940
BssMI	GATC	6 cut(s)	24, 34, 186, 448, 483, 934
BssT1I	CCWWGG	2 cut(s)	619, 940
Bst2UI	CCWGG	2 cut(s)	54, 531
Bst4CI	ACNGT	2 cut(s)	685, 716
BstBAI	YACGTR	3 cut(s)	128, 154, 218
BstC8I	GCNNGC	5 cut(s)	436, 527, 536, 874, 878
BstDEI	CTNAG	1 cut(s)	771
BstDSI	CCRYGG	2 cut(s)	619, 874
BstF5I	GGATG	3 cut(s)	823, 841, 892
BstFNI	CGCG	2 cut(s)	855, 876
BstKTI	GATC	6 cut(s)	27, 37, 189, 451, 486, 937
BstMAI	GTCTC	2 cut(s)	635, 788
BstMBI	GATC	6 cut(s)	24, 34, 186, 448, 483, 934
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	3 cut(s)	298, 531, 535
BstNI	CCWGG	2 cut(s)	54, 531
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	6 cut(s)	52, 499, 529, 755, 844, 845
BstSLI	GKGCMC	2 cut(s)	363, 603
BstUI	CGCG	2 cut(s)	855, 876
BstV1I	GCAGC	2 cut(s)	410, 754
BstX2I	RGATCY	1 cut(s)	483
BstYI	RGATCY	1 cut(s)	483
BstZI	CGGCCG	1 cut(s)	436
BtgI	CCRYGG	2 cut(s)	619, 874
BtrI	CACGTC	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	823, 841, 892
BtsI	GCAGTG	1 cut(s)	887
BtsIMutI	CAGTG	2 cut(s)	782, 887
Cac8I	GCNNGC	5 cut(s)	436, 527, 536, 874, 878
Cfr10I	RCCGGY	2 cut(s)	197, 434
Cfr42I	CCGCGG	1 cut(s)	877
Cfr9I	CCCGGG	1 cut(s)	845
CspAI	ACCGGT	1 cut(s)	197
CviAII	CATG	4 cut(s)	71, 404, 620, 748
DdeI	CTNAG	1 cut(s)	771
DpnI	GATC	6 cut(s)	26, 36, 188, 450, 485, 936
DpnII	GATC	6 cut(s)	24, 34, 186, 448, 483, 934
EaeI	YGGCCR	2 cut(s)	432, 436
EagI	CGGCCG	1 cut(s)	436
Ecl136II	GAGCTC	2 cut(s)	292, 301
EclXI	CGGCCG	1 cut(s)	436
Eco130I	CCWWGG	2 cut(s)	619, 940
Eco24I	GRGCYC	4 cut(s)	294, 303, 363, 833
Eco47I	GGWCC	3 cut(s)	333, 630, 727
Eco52I	CGGCCG	1 cut(s)	436
Eco53kI	GAGCTC	2 cut(s)	292, 301
Eco72I	CACGTG	3 cut(s)	128, 154, 218
Eco88I	CYCGRG	3 cut(s)	164, 832, 845
EcoICRI	GAGCTC	2 cut(s)	292, 301
EcoO109I	RGGNCCY	1 cut(s)	360
EcoRI	GAATTC	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	52, 529
EcoT14I	CCWWGG	2 cut(s)	619, 940
EcoT38I	GRGCYC	4 cut(s)	294, 303, 363, 833
ErhI	CCWWGG	2 cut(s)	619, 940
Esp3I	CGTCTC	1 cut(s)	788
FaeI	CATG	4 cut(s)	74, 407, 623, 751
FalI	AAGNNNNNCTT	2 cut(s)	885, 917
FaqI	GGGAC	4 cut(s)	116, 191, 287, 365
FatI	CATG	4 cut(s)	70, 403, 619, 747
FauI	CCCGC	6 cut(s)	216, 518, 848, 869, 881, 908
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	5 cut(s)	212, 421, 424, 439, 768
FokI	GGATG	3 cut(s)	828, 830, 899
FriOI	GRGCYC	4 cut(s)	294, 303, 363, 833
FseI	GGCCGGCC	1 cut(s)	438
Fsp4HI	GCNGC	5 cut(s)	212, 421, 424, 439, 768
FspBI	CTAG	4 cut(s)	83, 345, 539, 732
GluI	GCNGC	5 cut(s)	212, 421, 424, 439, 768
GsaI	CCCAGC	1 cut(s)	830
GsuI	CTGGAG	2 cut(s)	75, 600
HapII	CCGG	5 cut(s)	198, 435, 500, 756, 846
Hin1II	CATG	4 cut(s)	74, 407, 623, 751
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	29
HpaII	CCGG	5 cut(s)	198, 435, 500, 756, 846
HphI	GGTGA	5 cut(s)	212, 515, 635, 915, 956
Hpy166II	GTNNAC	4 cut(s)	139, 601, 630, 727
Hpy188I	TCNGA	2 cut(s)	669, 695
Hpy8I	GTNNAC	4 cut(s)	139, 601, 630, 727
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	4 cut(s)	88, 508, 542, 616
HpyCH4III	ACNGT	2 cut(s)	685, 716
HpyCH4IV	ACGT	5 cut(s)	127, 153, 176, 217, 797
HpyCH4V	TGCA	4 cut(s)	13, 601, 782, 866
HpyF10VI	GCNNNNNNNGC	3 cut(s)	298, 531, 535
HpyF3I	CTNAG	1 cut(s)	771
HpySE526I	ACGT	5 cut(s)	127, 153, 176, 217, 797
Hsp92II	CATG	4 cut(s)	74, 407, 623, 751
KroI	GCCGGC	1 cut(s)	434
KroNI	GCCGGC	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	34
KspI	CCGCGG	1 cut(s)	877
Kzo9I	GATC	6 cut(s)	24, 34, 186, 448, 483, 934
LmnI	GCTCC	4 cut(s)	56, 153, 169, 372
Lsp1109I	GCAGC	2 cut(s)	410, 754
MaeI	CTAG	4 cut(s)	83, 345, 539, 732
MaeII	ACGT	5 cut(s)	127, 153, 176, 217, 797
MaeIII	GTNAC	4 cut(s)	226, 385, 503, 734
MalI	GATC	6 cut(s)	26, 36, 188, 450, 485, 936
MboI	GATC	6 cut(s)	24, 34, 186, 448, 483, 934
MboII	GAAGA	3 cut(s)	820, 946, 949
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	5 cut(s)	294, 303, 363, 603, 833
MluCI	AATT	5 cut(s)	116, 339, 508, 636, 761
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	8 cut(s)	160, 173, 184, 375, 515, 577, 766, 861
MroNI	GCCGGC	1 cut(s)	434
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	750
MspA1I	CMGCKG	1 cut(s)	876
MspI	CCGG	5 cut(s)	198, 435, 500, 756, 846
MspR9I	CCNGG	6 cut(s)	54, 501, 531, 757, 846, 847
MvaI	CCWGG	2 cut(s)	54, 531
MvnI	CGCG	2 cut(s)	855, 876
MwoI	GCNNNNNNNGC	3 cut(s)	298, 531, 535
NaeI	GCCGGC	1 cut(s)	436
NciI	CCSGG	4 cut(s)	501, 757, 846, 847
NcoI	CCATGG	1 cut(s)	619
NdeII	GATC	6 cut(s)	24, 34, 186, 448, 483, 934
NgoMIV	GCCGGC	1 cut(s)	434
NlaIII	CATG	4 cut(s)	74, 407, 623, 751
NlaIV	GGNNCC	8 cut(s)	196, 335, 361, 362, 485, 632, 729, 754
NmuCI	GTSAC	4 cut(s)	226, 385, 503, 734
NspI	RCATGY	1 cut(s)	74
OliI	CACNNNNGTG	1 cut(s)	750
PaeR7I	CTCGAG	1 cut(s)	164
PdiI	GCCGGC	1 cut(s)	436
PflFI	GACNNNGTC	2 cut(s)	178, 614
PflMI	CCANNNNNTGG	2 cut(s)	221, 620
PinAI	ACCGGT	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	213, 422, 425, 440, 769
PmaCI	CACGTG	3 cut(s)	128, 154, 218
PmlI	CACGTG	3 cut(s)	128, 154, 218
Ppu21I	YACGTR	3 cut(s)	128, 154, 218
Psp124BI	GAGCTC	2 cut(s)	294, 303
Psp6I	CCWGG	2 cut(s)	52, 529
PspCI	CACGTG	3 cut(s)	128, 154, 218
PspFI	CCCAGC	1 cut(s)	826
PspGI	CCWGG	2 cut(s)	52, 529
PspN4I	GGNNCC	8 cut(s)	196, 335, 361, 362, 485, 632, 729, 754
PspOMI	GGGCCC	1 cut(s)	359
PspXI	VCTCGAGB	1 cut(s)	164
PsuI	RGATCY	1 cut(s)	483
PsyI	GACNNNGTC	2 cut(s)	178, 614
RigI	GGCCGGCC	1 cut(s)	438
RseI	CAYNNNNRTG	1 cut(s)	750
SacI	GAGCTC	2 cut(s)	294, 303
SacII	CCGCGG	1 cut(s)	877
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	5 cut(s)	212, 421, 424, 439, 768
Sau3AI	GATC	6 cut(s)	24, 34, 186, 448, 483, 934
ScrFI	CCNGG	6 cut(s)	54, 501, 531, 757, 846, 847
SduI	GDGCHC	5 cut(s)	294, 303, 363, 603, 833
Sfr274I	CTCGAG	1 cut(s)	164
Sfr303I	CCGCGG	1 cut(s)	877
SgrBI	CCGCGG	1 cut(s)	877
SinI	GGWCC	3 cut(s)	333, 630, 727
SlaI	CTCGAG	1 cut(s)	164
SmaI	CCCGGG	1 cut(s)	847
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	5 cut(s)	116, 339, 508, 636, 761
SspMI	CTAG	4 cut(s)	83, 345, 539, 732
SstI	GAGCTC	2 cut(s)	294, 303
StyD4I	CCNGG	6 cut(s)	52, 499, 529, 755, 844, 845
StyI	CCWWGG	2 cut(s)	619, 940
TaaI	ACNGT	2 cut(s)	685, 716
TaiI	ACGT	5 cut(s)	130, 156, 179, 220, 800
TaqI	TCGA	5 cut(s)	138, 165, 189, 546, 609
TasI	AATT	5 cut(s)	116, 339, 508, 636, 761
TauI	GCSGC	3 cut(s)	214, 423, 441
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	789, 887
TseFI	GTSAC	4 cut(s)	226, 385, 503, 734
TseI	GCWGC	2 cut(s)	423, 767
Tsp45I	GTSAC	4 cut(s)	226, 385, 503, 734
TspGWI	ACGGA	2 cut(s)	373, 806
TspMI	CCCGGG	1 cut(s)	845
TspRI	CASTG	2 cut(s)	789, 887
Tth111I	GACNNNGTC	2 cut(s)	178, 614
Van91I	CCANNNNNTGG	2 cut(s)	221, 620
VneI	GTGCAC	1 cut(s)	599
VpaK11BI	GGWCC	3 cut(s)	333, 630, 727
XapI	RAATTY	2 cut(s)	116, 761
XceI	RCATGY	1 cut(s)	74
XhoI	CTCGAG	1 cut(s)	164
XmaI	CCCGGG	1 cut(s)	845
XmiI	GTMKAC	1 cut(s)	138
XspI	CTAG	4 cut(s)	83, 345, 539, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.