Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8129152.1

Orthogroup ID

OG0005031

Physical Location & Seq

Genomic Coordinates Reverse (-)

97 .. 628

Gene Structure 532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8129152.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 532 bp

ttacgatgttgttgatcaaaagtggatccaatacccaacaccgggggacaatttgaagggaagaggtgggcctggactcctagtgtcccaaggaaagatatgggttgtgtatggctttgctggagaggaagcagatgatgtgcacacatttgatctagaccataaagagtggacccaagttgagacaattggggagaaaccaaccgcccgaagcgtattttctactgttgcaattgggaaatacataattgtatacggtggagaagttgaccccagtgatctaggtcacatgggtgccggaaagtttaccgctcaagcttatgcactggacacagagacattgctgtggaagcaattggatgatggcttggagtcgagccatcatcctggacctcgcggttggtgtgcatttacgggtggggaaagagatggccgagtgggacttttggtctatggtgggaattcgccgagtaatgatcggcttgatgacattttctttttcactccttatttcgaagcagatgaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_3 Kelch_4

Protein Analysis

176

Amino Acids

19.39

Weight (kDa)

4.61

Isoelectric Point (pI)

16.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54040 AT1G54040 AT1G54040 AT2G33070 AT2G33070 AT2G33070 AT3G07720 AT3G16390 AT3G16390 AT3G16400 AT3G16400 AT3G16410
fragaria_vesca	FvH4_6g40583
malus_domestica	MD09G1127800.v1.1 MD17G1117500.v1.1
prunus_persica	Prupe.3G197100_v2.0.a1
pyrus_communis	pycom09g05160 pycom17g10810
rosa_chinensis	RchiOBHm_Chr2g0155891
rosa_laevigata	RLG00000020873
rosa_multiflora	Rmu_co8129152.1_g000001 Rmu_sc0003417.1_g000024
rosa_roxburghii	Rroxscaffold_2G00093420
rosa_rugosa	Rorug02G0450600
rosa_samantha	Rh2AG517200 Rh2BG528000 Rh2CG501900 Rh2DG537200
rosa_wichuraiana	Rw2G042530 Rw2G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	294
AccBSI	CCGCTC	1 cut(s)	312
AccI	GTMKAC	1 cut(s)	253
AccII	CGCG	1 cut(s)	397
AciI	CCGC	3 cut(s)	205, 310, 397
AclWI	GGATC	2 cut(s)	20, 33
AcoI	YGGCCR	1 cut(s)	431
AcsI	RAATTY	1 cut(s)	461
AfiI	CCNNNNNNNGG	2 cut(s)	41, 42
AgsI	TTSAA	1 cut(s)	56
AhdI	GACNNNNNGTC	1 cut(s)	447
AjnI	CCWGG	2 cut(s)	71, 386
AleI	CACNNNNGTG	1 cut(s)	292
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	2 cut(s)	177, 330
Alw44I	GTGCAC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	20, 33
AoxI	GGCC	2 cut(s)	69, 431
ApaLI	GTGCAC	1 cut(s)	141
ApoI	RAATTY	1 cut(s)	461
AspS9I	GGNCC	3 cut(s)	69, 172, 390
AsuC2I	CCSGG	1 cut(s)	43
AsuII	TTCGAA	1 cut(s)	514
AvaII	GGWCC	2 cut(s)	172, 390
BaeGI	GKGCMC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	145
BccI	CCATC	3 cut(s)	357, 388, 423
BciT130I	CCWGG	2 cut(s)	73, 388
BclI	TGATCA	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	177, 330
BfaI	CTAG	3 cut(s)	81, 156, 282
Bme1390I	CCNGG	3 cut(s)	43, 73, 388
Bme18I	GGWCC	2 cut(s)	172, 390
BmeRI	GACNNNNNGTC	1 cut(s)	447
BmgT120I	GGNCC	3 cut(s)	69, 172, 390
BmiI	GGNNCC	3 cut(s)	27, 174, 296
BmrFI	CCNGG	3 cut(s)	43, 73, 388
BmrI	ACTGGG	1 cut(s)	268
BmuI	ACTGGG	1 cut(s)	268
BpmI	CTGGAG	1 cut(s)	142
Bpu14I	TTCGAA	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	2 cut(s)	42, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 42
Bse1I	ACTGG	2 cut(s)	274, 331
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	2 cut(s)	73, 388
BseDI	CCNNGG	2 cut(s)	42, 89
BseGI	GGATG	2 cut(s)	365, 383
BseLI	CCNNNNNNNGG	2 cut(s)	41, 42
BseMI	GCAATG	1 cut(s)	339
BseNI	ACTGG	2 cut(s)	274, 331
BseSI	GKGCMC	1 cut(s)	145
Bsh1236I	CGCG	1 cut(s)	397
BshFI	GGCC	2 cut(s)	71, 433
BshNI	GGYRCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	42, 298
BslFI	GGGAC	3 cut(s)	60, 71, 454
BslI	CCNNNNNNNGG	2 cut(s)	41, 42
BsmAI	GTCTC	2 cut(s)	177, 330
BsmFI	GGGAC	3 cut(s)	60, 71, 454
BsnI	GGCC	2 cut(s)	71, 433
Bsp119I	TTCGAA	1 cut(s)	514
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	5 cut(s)	14, 25, 152, 278, 476
BspACI	CCGC	3 cut(s)	205, 310, 397
BspANI	GGCC	2 cut(s)	71, 433
BspFNI	CGCG	1 cut(s)	397
BspLI	GGNNCC	3 cut(s)	27, 174, 296
BspPI	GGATC	2 cut(s)	20, 33
BspT104I	TTCGAA	1 cut(s)	514
BspT107I	GGYRCC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	312
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	274, 331
BssECI	CCNNGG	2 cut(s)	42, 89
BssMI	GATC	5 cut(s)	14, 25, 152, 278, 476
BssNAI	GTATAC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	89
Bst1107I	GTATAC	1 cut(s)	254
Bst2UI	CCWGG	2 cut(s)	73, 388
Bst4CI	ACNGT	2 cut(s)	227, 258
Bst6I	CTCTTC	1 cut(s)	56
BstBI	TTCGAA	1 cut(s)	514
BstF5I	GGATG	2 cut(s)	365, 383
BstFNI	CGCG	1 cut(s)	397
BstKTI	GATC	5 cut(s)	17, 28, 155, 281, 479
BstMAI	GTCTC	2 cut(s)	177, 330
BstMBI	GATC	5 cut(s)	14, 25, 152, 278, 476
BstMWI	GCNNNNNNNGC	1 cut(s)	350
BstNI	CCWGG	2 cut(s)	73, 388
BstSCI	CCNGG	3 cut(s)	41, 71, 386
BstSLI	GKGCMC	1 cut(s)	145
BstUI	CGCG	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	25
BstZ17I	GTATAC	1 cut(s)	254
BsuRI	GGCC	2 cut(s)	71, 433
BtsCI	GGATG	2 cut(s)	365, 383
BtsIMutI	CAGTG	2 cut(s)	281, 324
Cfr13I	GGNCC	3 cut(s)	69, 172, 390
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	7 cut(s)	71, 115, 318, 367, 379, 433, 482
CviKI_1	RGCY	7 cut(s)	71, 115, 318, 367, 379, 433, 482
DpnI	GATC	5 cut(s)	16, 27, 154, 280, 478
DpnII	GATC	5 cut(s)	14, 25, 152, 278, 476
DriI	GACNNNNNGTC	1 cut(s)	447
EaeI	YGGCCR	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	56
Eam1105I	GACNNNNNGTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	89
Eco47I	GGWCC	2 cut(s)	172, 390
EcoRI	GAATTC	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	71, 386
EcoT14I	CCWWGG	1 cut(s)	89
ErhI	CCWWGG	1 cut(s)	89
FaeI	CATG	1 cut(s)	293
FaiI	YATR	8 cut(s)	101, 112, 163, 246, 254, 291, 322, 454
FaqI	GGGAC	3 cut(s)	60, 71, 454
FatI	CATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	14
FblI	GTMKAC	1 cut(s)	253
FokI	GGATG	2 cut(s)	370, 372
FspBI	CTAG	3 cut(s)	81, 156, 282
GsuI	CTGGAG	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	71, 433
HapII	CCGG	2 cut(s)	42, 298
Hin1II	CATG	1 cut(s)	293
HincII	GTYRAC	1 cut(s)	269
HindII	GTYRAC	1 cut(s)	269
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	2 cut(s)	76, 372
HpaII	CCGG	2 cut(s)	42, 298
Hpy166II	GTNNAC	5 cut(s)	143, 172, 254, 269, 307
Hpy188III	TCNNGA	1 cut(s)	156
Hpy8I	GTNNAC	5 cut(s)	143, 172, 254, 269, 307
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	2 cut(s)	227, 258
HpyCH4V	TGCA	4 cut(s)	143, 231, 324, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	350
Hsp92II	CATG	1 cut(s)	293
Ksp22I	TGATCA	1 cut(s)	14
Kzo9I	GATC	5 cut(s)	14, 25, 152, 278, 476
LpnPI	CCDG	9 cut(s)	55, 58, 85, 106, 287, 311, 312, 373, 400
MaeI	CTAG	3 cut(s)	81, 156, 282
MaeIII	GTNAC	1 cut(s)	285
MalI	GATC	5 cut(s)	16, 27, 154, 280, 478
MbiI	CCGCTC	1 cut(s)	312
MboI	GATC	5 cut(s)	14, 25, 152, 278, 476
MboII	GAAGA	1 cut(s)	73
MfeI	CAATTG	3 cut(s)	187, 232, 354
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	6 cut(s)	50, 187, 232, 247, 354, 461
MlyI	GAGTC	2 cut(s)	70, 381
MnlI	CCTC	3 cut(s)	57, 119, 403
MslI	CAYNNNNRTG	2 cut(s)	292, 344
MspI	CCGG	2 cut(s)	42, 298
MspR9I	CCNGG	3 cut(s)	43, 73, 388
MunI	CAATTG	3 cut(s)	187, 232, 354
MvaI	CCWGG	2 cut(s)	73, 388
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	350
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	5 cut(s)	14, 25, 152, 278, 476
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	3 cut(s)	27, 174, 296
NmeAIII	GCCGAG	2 cut(s)	459, 493
NmuCI	GTSAC	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	514
OliI	CACNNNNGTG	1 cut(s)	292
PfoI	TCCNGGA	1 cut(s)	386
PleI	GAGTC	2 cut(s)	70, 380
PpsI	GAGTC	2 cut(s)	70, 380
Psp6I	CCWGG	2 cut(s)	71, 386
PspGI	CCWGG	2 cut(s)	71, 386
PspN4I	GGNNCC	3 cut(s)	27, 174, 296
PspPI	GGNCC	3 cut(s)	69, 172, 390
PsuI	RGATCY	1 cut(s)	25
RseI	CAYNNNNRTG	2 cut(s)	292, 344
Sau3AI	GATC	5 cut(s)	14, 25, 152, 278, 476
Sau96I	GGNCC	3 cut(s)	69, 172, 390
SchI	GAGTC	2 cut(s)	70, 381
ScrFI	CCNGG	3 cut(s)	43, 73, 388
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	4 cut(s)	68, 287, 320, 395
SfuI	TTCGAA	1 cut(s)	514
SinI	GGWCC	2 cut(s)	172, 390
SmiMI	CAYNNNNRTG	2 cut(s)	292, 344
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	6 cut(s)	50, 187, 232, 247, 354, 461
SsiI	CCGC	3 cut(s)	205, 310, 397
SspMI	CTAG	3 cut(s)	81, 156, 282
StyD4I	CCNGG	3 cut(s)	41, 71, 386
StyI	CCWWGG	1 cut(s)	89
TaaI	ACNGT	2 cut(s)	227, 258
TaqI	TCGA	2 cut(s)	375, 514
TasI	AATT	6 cut(s)	50, 187, 232, 247, 354, 461
TscAI	CASTG	2 cut(s)	281, 331
TseFI	GTSAC	1 cut(s)	285
Tsp45I	GTSAC	1 cut(s)	285
TspRI	CASTG	2 cut(s)	281, 331
VneI	GTGCAC	1 cut(s)	141
VpaK11BI	GGWCC	2 cut(s)	172, 390
XapI	RAATTY	1 cut(s)	461
XbaI	TCTAGA	1 cut(s)	155
XmiI	GTMKAC	1 cut(s)	253
XspI	CTAG	3 cut(s)	81, 156, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.