Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003417.1

Orthogroup ID

OG0005031

Physical Location & Seq

Genomic Coordinates Forward (+)

118738 .. 120710

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003417.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atggctctcagtcaaggcaagtggatcaagcttgatcaaggtggaactgggcctggagcaagaagctcacatgccataacccttgttggacaaaaggcctatgcctttggtggcgaattccagccacgtgtcccggtggacaacaagatgcacgtgtttgacctcaaagagctgacgtggtcttcaatttccggcaccggcgatatcccaccgccacgtgtcggtgtgacgatggcaactattggaaaaaccatttatgtatttggtggcagggacaacgagcataaggagctcaatgagctttactcctttgacacatctacaaacaagtggaccctaatttccagtggggatgcaggcccccctcaccggagctaccactcggtgactaccgacgaccgtcatgtgtatatttttgggggctgcggagtggccggccgcctcaatgatctatgggcttacgatgttgttgatcaaaagtggatccaatacccaacaccgggggacaatttgaagggaagaggtgggcctggactcctagtgtcccaaggaaagatatgggttgtgtatggctttgctggagaggaagcagatgatgtgcacacatttgatctagaccataaagagtggacccaagttgagacaattggggagaaaccaaccgcccgaagcgtattttctactgttgcaattgggaaatacataattgtatacggtggagaagttgaccccagtgatctaggtcacatgggtgccggaaagtttaccgctcaagcttatgcactggacacagagacattgctgtggaagcaattggatgatggcttggagtcgagccatcatcctggacctcgcggttggtgtgcatttacgggtggggaaagagatggccgagtgggacttttggtctatggtgggaattcgccgagtaatgatcggcttgatgacattttctttttcactccttatttcgaagcagatgaaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_1 Kelch_3 Kelch_4

Protein Analysis

329

Amino Acids

36.0

Weight (kDa)

5.26

Isoelectric Point (pI)

24.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005031)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54040 AT1G54040 AT1G54040 AT2G33070 AT2G33070 AT2G33070 AT3G07720 AT3G16390 AT3G16390 AT3G16400 AT3G16400 AT3G16410
fragaria_vesca	FvH4_6g40583
malus_domestica	MD09G1127800.v1.1 MD17G1117500.v1.1
prunus_persica	Prupe.3G197100_v2.0.a1
pyrus_communis	pycom09g05160 pycom17g10810
rosa_chinensis	RchiOBHm_Chr2g0155891
rosa_laevigata	RLG00000020873
rosa_multiflora	Rmu_co8129152.1_g000001 Rmu_sc0003417.1_g000024
rosa_roxburghii	Rroxscaffold_2G00093420
rosa_rugosa	Rorug02G0450600
rosa_samantha	Rh2AG517200 Rh2BG528000 Rh2CG501900 Rh2DG537200
rosa_wichuraiana	Rw2G042530 Rw2G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	194, 752
AccBSI	CCGCTC	1 cut(s)	770
AccI	GTMKAC	1 cut(s)	711
AccII	CGCG	1 cut(s)	855
AciI	CCGC	6 cut(s)	212, 426, 439, 663, 768, 855
AclWI	GGATC	3 cut(s)	32, 478, 491
AcoI	YGGCCR	3 cut(s)	432, 436, 889
AcsI	RAATTY	2 cut(s)	116, 919
AcvI	CACGTG	3 cut(s)	128, 154, 218
AdeI	CACNNNGTG	1 cut(s)	385
AfiI	CCNNNNNNNGG	4 cut(s)	221, 369, 499, 500
AflIII	ACRYGT	3 cut(s)	127, 153, 217
AgsI	TTSAA	2 cut(s)	186, 514
AhdI	GACNNNNNGTC	1 cut(s)	905
AjiI	CACGTC	1 cut(s)	177
AjnI	CCWGG	3 cut(s)	52, 529, 844
AleI	CACNNNNGTG	1 cut(s)	750
AluBI	AGCT	7 cut(s)	31, 66, 172, 292, 301, 375, 776
AluI	AGCT	7 cut(s)	31, 66, 172, 292, 301, 375, 776
Alw21I	GWGCWC	2 cut(s)	294, 603
Alw26I	GTCTC	2 cut(s)	635, 788
Alw44I	GTGCAC	1 cut(s)	599
AlwI	GGATC	3 cut(s)	32, 478, 491
AoxI	GGCC	7 cut(s)	50, 96, 358, 432, 436, 527, 889
ApaLI	GTGCAC	1 cut(s)	599
ApeKI	GCWGC	1 cut(s)	423
ApoI	RAATTY	2 cut(s)	116, 919
AspS9I	GGNCC	6 cut(s)	50, 333, 359, 527, 630, 848
AsuC2I	CCSGG	2 cut(s)	134, 501
AsuHPI	GGTGA	2 cut(s)	359, 397
AsuII	TTCGAA	1 cut(s)	972
AvaII	GGWCC	3 cut(s)	333, 630, 848
BaeGI	GKGCMC	1 cut(s)	603
BamHI	GGATCC	1 cut(s)	483
BanI	GGYRCC	2 cut(s)	194, 752
BanII	GRGCYC	1 cut(s)	294
BbrPI	CACGTG	3 cut(s)	128, 154, 218
BbsI	GAAGAC	1 cut(s)	174
Bbv12I	GWGCWC	2 cut(s)	294, 603
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	4 cut(s)	226, 815, 846, 881
BciT130I	CCWGG	3 cut(s)	54, 531, 846
BclI	TGATCA	2 cut(s)	34, 472
BcnI	CCSGG	2 cut(s)	134, 501
BcoDI	GTCTC	2 cut(s)	635, 788
BfaI	CTAG	3 cut(s)	539, 614, 740
BisI	GCNGC	2 cut(s)	424, 439
BlsI	GCNGC	2 cut(s)	425, 440
Bme1390I	CCNGG	5 cut(s)	54, 134, 501, 531, 846
Bme18I	GGWCC	3 cut(s)	333, 630, 848
BmeRI	GACNNNNNGTC	1 cut(s)	905
BmgBI	CACGTC	1 cut(s)	177
BmgT120I	GGNCC	6 cut(s)	50, 333, 359, 527, 630, 848
BmiI	GGNNCC	6 cut(s)	196, 335, 361, 485, 632, 754
BmrFI	CCNGG	5 cut(s)	54, 134, 501, 531, 846
BmrI	ACTGGG	2 cut(s)	57, 726
BmsI	GCATC	2 cut(s)	138, 343
BmuI	ACTGGG	2 cut(s)	57, 726
BoxI	GACNNNNGTC	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	174
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpmI	CTGGAG	2 cut(s)	75, 600
Bpu14I	TTCGAA	1 cut(s)	972
BpuEI	CTTGAG	1 cut(s)	756
BpuMI	CCSGG	2 cut(s)	134, 501
BsaAI	YACGTR	3 cut(s)	128, 154, 218
BsaJI	CCNNGG	2 cut(s)	500, 547
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	4 cut(s)	221, 369, 499, 500
Bse118I	RCCGGY	2 cut(s)	197, 434
Bse1I	ACTGG	4 cut(s)	52, 345, 732, 789
Bse3DI	GCAATG	1 cut(s)	797
BseBI	CCWGG	3 cut(s)	54, 531, 846
BseDI	CCNNGG	2 cut(s)	500, 547
BseGI	GGATG	3 cut(s)	358, 823, 841
BseLI	CCNNNNNNNGG	4 cut(s)	221, 369, 499, 500
BseMI	GCAATG	1 cut(s)	797
BseMII	CTCAG	1 cut(s)	22
BseNI	ACTGG	4 cut(s)	52, 345, 732, 789
BseSI	GKGCMC	1 cut(s)	603
BseX3I	CGGCCG	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	410
Bsh1236I	CGCG	1 cut(s)	855
Bsh1285I	CGRYCG	2 cut(s)	400, 439
BshFI	GGCC	7 cut(s)	52, 98, 360, 434, 438, 529, 891
BshNI	GGYRCC	2 cut(s)	194, 752
BsiEI	CGRYCG	2 cut(s)	400, 439
BsiHKAI	GWGCWC	2 cut(s)	294, 603
BsiSI	CCGG	7 cut(s)	134, 192, 198, 370, 435, 500, 756
BslFI	GGGAC	5 cut(s)	116, 287, 518, 529, 912
BslI	CCNNNNNNNGG	4 cut(s)	221, 369, 499, 500
BsmAI	GTCTC	2 cut(s)	635, 788
BsmFI	GGGAC	5 cut(s)	116, 287, 518, 529, 912
BsnI	GGCC	7 cut(s)	52, 98, 360, 434, 438, 529, 891
Bsp119I	TTCGAA	1 cut(s)	972
Bsp1286I	GDGCHC	2 cut(s)	294, 603
Bsp143I	GATC	8 cut(s)	24, 34, 448, 472, 483, 610, 736, 934
BspACI	CCGC	6 cut(s)	212, 426, 439, 663, 768, 855
BspANI	GGCC	7 cut(s)	52, 98, 360, 434, 438, 529, 891
BspCNI	CTCAG	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	855
BspLI	GGNNCC	6 cut(s)	196, 335, 361, 485, 632, 754
BspPI	GGATC	3 cut(s)	32, 478, 491
BspT104I	TTCGAA	1 cut(s)	972
BspT107I	GGYRCC	2 cut(s)	194, 752
BsrBI	CCGCTC	1 cut(s)	770
BsrDI	GCAATG	1 cut(s)	797
BsrFI	RCCGGY	2 cut(s)	197, 434
BsrI	ACTGG	4 cut(s)	52, 345, 732, 789
BssAI	RCCGGY	2 cut(s)	197, 434
BssECI	CCNNGG	2 cut(s)	500, 547
BssMI	GATC	8 cut(s)	24, 34, 448, 472, 483, 610, 736, 934
BssNAI	GTATAC	1 cut(s)	712
BssT1I	CCWWGG	1 cut(s)	547
Bst1107I	GTATAC	1 cut(s)	712
Bst2UI	CCWGG	3 cut(s)	54, 531, 846
Bst4CI	ACNGT	3 cut(s)	401, 685, 716
Bst6I	CTCTTC	1 cut(s)	514
BstBAI	YACGTR	3 cut(s)	128, 154, 218
BstBI	TTCGAA	1 cut(s)	972
BstC8I	GCNNGC	2 cut(s)	358, 436
BstDEI	CTNAG	1 cut(s)	8
BstF5I	GGATG	3 cut(s)	358, 823, 841
BstFNI	CGCG	1 cut(s)	855
BstKTI	GATC	8 cut(s)	27, 37, 451, 475, 486, 613, 739, 937
BstMAI	GTCTC	2 cut(s)	635, 788
BstMBI	GATC	8 cut(s)	24, 34, 448, 472, 483, 610, 736, 934
BstMCI	CGRYCG	2 cut(s)	400, 439
BstMWI	GCNNNNNNNGC	3 cut(s)	289, 298, 808
BstNI	CCWGG	3 cut(s)	54, 531, 846
BstNSI	RCATGY	1 cut(s)	74
BstPAI	GACNNNNGTC	1 cut(s)	399
BstSCI	CCNGG	5 cut(s)	52, 132, 499, 529, 844
BstSLI	GKGCMC	1 cut(s)	603
BstUI	CGCG	1 cut(s)	855
BstV1I	GCAGC	1 cut(s)	410
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	483
BstXI	CCANNNNNNTGG	1 cut(s)	845
BstYI	RGATCY	1 cut(s)	483
BstZ17I	GTATAC	1 cut(s)	712
BstZI	CGGCCG	1 cut(s)	436
BsuRI	GGCC	7 cut(s)	52, 98, 360, 434, 438, 529, 891
BtrI	CACGTC	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	358, 823, 841
BtsIMutI	CAGTG	3 cut(s)	352, 739, 782
Cac8I	GCNNGC	2 cut(s)	358, 436
Cfr10I	RCCGGY	2 cut(s)	197, 434
Cfr13I	GGNCC	6 cut(s)	50, 333, 359, 527, 630, 848
CspCI	CAANNNNNGTGG	1 cut(s)	37
CviAII	CATG	3 cut(s)	71, 404, 748
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	8 cut(s)	26, 36, 450, 474, 485, 612, 738, 936
DpnII	GATC	8 cut(s)	24, 34, 448, 472, 483, 610, 736, 934
DraIII	CACNNNGTG	1 cut(s)	385
DriI	GACNNNNNGTC	1 cut(s)	905
EaeI	YGGCCR	3 cut(s)	432, 436, 889
EagI	CGGCCG	1 cut(s)	436
Eam1104I	CTCTTC	1 cut(s)	514
Eam1105I	GACNNNNNGTC	1 cut(s)	905
EarI	CTCTTC	1 cut(s)	514
Ecl136II	GAGCTC	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	547
Eco147I	AGGCCT	1 cut(s)	98
Eco24I	GRGCYC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	205
Eco47I	GGWCC	3 cut(s)	333, 630, 848
Eco52I	CGGCCG	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	292
Eco72I	CACGTG	3 cut(s)	128, 154, 218
EcoICRI	GAGCTC	1 cut(s)	292
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRI	GAATTC	2 cut(s)	116, 919
EcoRII	CCWGG	3 cut(s)	52, 529, 844
EcoRV	GATATC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	547
FaeI	CATG	3 cut(s)	74, 407, 751
FaqI	GGGAC	5 cut(s)	116, 287, 518, 529, 912
FatI	CATG	3 cut(s)	70, 403, 747
FbaI	TGATCA	2 cut(s)	34, 472
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	2 cut(s)	424, 439
FokI	GGATG	3 cut(s)	365, 828, 830
FriOI	GRGCYC	1 cut(s)	294
FseI	GGCCGGCC	1 cut(s)	438
Fsp4HI	GCNGC	2 cut(s)	424, 439
FspBI	CTAG	3 cut(s)	539, 614, 740
GluI	GCNGC	2 cut(s)	424, 439
GsuI	CTGGAG	2 cut(s)	75, 600
HaeIII	GGCC	7 cut(s)	52, 98, 360, 434, 438, 529, 891
HapII	CCGG	7 cut(s)	134, 192, 198, 370, 435, 500, 756
Hin1II	CATG	3 cut(s)	74, 407, 751
HincII	GTYRAC	1 cut(s)	727
HindII	GTYRAC	1 cut(s)	727
HindIII	AAGCTT	2 cut(s)	29, 774
HinfI	GANTC	2 cut(s)	534, 830
HpaII	CCGG	7 cut(s)	134, 192, 198, 370, 435, 500, 756
HphI	GGTGA	2 cut(s)	359, 397
Hpy166II	GTNNAC	7 cut(s)	139, 333, 601, 630, 712, 727, 765
Hpy188III	TCNNGA	1 cut(s)	614
Hpy8I	GTNNAC	7 cut(s)	139, 333, 601, 630, 712, 727, 765
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	3 cut(s)	401, 685, 716
HpyCH4IV	ACGT	4 cut(s)	127, 153, 176, 217
HpyCH4V	TGCA	6 cut(s)	151, 356, 601, 689, 782, 866
HpyF10VI	GCNNNNNNNGC	3 cut(s)	289, 298, 808
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	4 cut(s)	127, 153, 176, 217
Hsp92II	CATG	3 cut(s)	74, 407, 751
KroI	GCCGGC	1 cut(s)	434
KroNI	GCCGGC	1 cut(s)	436
Ksp22I	TGATCA	2 cut(s)	34, 472
Kzo9I	GATC	8 cut(s)	24, 34, 448, 472, 483, 610, 736, 934
LmnI	GCTCC	3 cut(s)	56, 289, 372
Lsp1109I	GCAGC	1 cut(s)	410
LweI	GCATC	2 cut(s)	138, 343
MaeI	CTAG	3 cut(s)	539, 614, 740
MaeII	ACGT	4 cut(s)	127, 153, 176, 217
MaeIII	GTNAC	3 cut(s)	226, 385, 743
MalI	GATC	8 cut(s)	26, 36, 450, 474, 485, 612, 738, 936
MbiI	CCGCTC	1 cut(s)	770
MboI	GATC	8 cut(s)	24, 34, 448, 472, 483, 610, 736, 934
MboII	GAAGA	2 cut(s)	174, 531
MfeI	CAATTG	3 cut(s)	645, 690, 812
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	2 cut(s)	294, 603
MluCI	AATT	9 cut(s)	116, 186, 339, 508, 645, 690, 705, 812, 919
MlyI	GAGTC	2 cut(s)	528, 839
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	6 cut(s)	173, 375, 452, 515, 577, 861
MroNI	GCCGGC	1 cut(s)	434
MslI	CAYNNNNRTG	2 cut(s)	750, 802
MspI	CCGG	7 cut(s)	134, 192, 198, 370, 435, 500, 756
MspR9I	CCNGG	5 cut(s)	54, 134, 501, 531, 846
MunI	CAATTG	3 cut(s)	645, 690, 812
MvaI	CCWGG	3 cut(s)	54, 531, 846
MvnI	CGCG	1 cut(s)	855
MwoI	GCNNNNNNNGC	3 cut(s)	289, 298, 808
NaeI	GCCGGC	1 cut(s)	436
NciI	CCSGG	2 cut(s)	134, 501
NdeII	GATC	8 cut(s)	24, 34, 448, 472, 483, 610, 736, 934
NgoMIV	GCCGGC	1 cut(s)	434
NlaIII	CATG	3 cut(s)	74, 407, 751
NlaIV	GGNNCC	6 cut(s)	196, 335, 361, 485, 632, 754
NmeAIII	GCCGAG	2 cut(s)	917, 951
NmuCI	GTSAC	3 cut(s)	226, 385, 743
NspI	RCATGY	1 cut(s)	74
NspV	TTCGAA	1 cut(s)	972
OliI	CACNNNNGTG	1 cut(s)	750
PceI	AGGCCT	1 cut(s)	98
PdiI	GCCGGC	1 cut(s)	436
PflFI	GACNNNGTC	1 cut(s)	178
PfoI	TCCNGGA	1 cut(s)	844
PkrI	GCNGC	2 cut(s)	425, 440
PleI	GAGTC	2 cut(s)	528, 838
PmaCI	CACGTG	3 cut(s)	128, 154, 218
PmlI	CACGTG	3 cut(s)	128, 154, 218
PpsI	GAGTC	2 cut(s)	528, 838
Ppu21I	YACGTR	3 cut(s)	128, 154, 218
PshAI	GACNNNNGTC	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	294
Psp6I	CCWGG	3 cut(s)	52, 529, 844
PspCI	CACGTG	3 cut(s)	128, 154, 218
PspGI	CCWGG	3 cut(s)	52, 529, 844
PspN4I	GGNNCC	6 cut(s)	196, 335, 361, 485, 632, 754
PspPI	GGNCC	6 cut(s)	50, 333, 359, 527, 630, 848
PsuI	RGATCY	1 cut(s)	483
PsyI	GACNNNGTC	1 cut(s)	178
RigI	GGCCGGCC	1 cut(s)	438
RseI	CAYNNNNRTG	2 cut(s)	750, 802
SacI	GAGCTC	1 cut(s)	294
SatI	GCNGC	2 cut(s)	424, 439
Sau3AI	GATC	8 cut(s)	24, 34, 448, 472, 483, 610, 736, 934
Sau96I	GGNCC	6 cut(s)	50, 333, 359, 527, 630, 848
SchI	GAGTC	2 cut(s)	528, 839
ScrFI	CCNGG	5 cut(s)	54, 134, 501, 531, 846
SduI	GDGCHC	2 cut(s)	294, 603
SfaNI	GCATC	2 cut(s)	138, 343
SfuI	TTCGAA	1 cut(s)	972
SgrAI	CRCCGGYG	1 cut(s)	197
SinI	GGWCC	3 cut(s)	333, 630, 848
SmiMI	CAYNNNNRTG	2 cut(s)	750, 802
SmlI	CTYRAG	1 cut(s)	771
SmoI	CTYRAG	1 cut(s)	771
Sse9I	AATT	9 cut(s)	116, 186, 339, 508, 645, 690, 705, 812, 919
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	6 cut(s)	212, 426, 439, 663, 768, 855
SspMI	CTAG	3 cut(s)	539, 614, 740
SstI	GAGCTC	1 cut(s)	294
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	5 cut(s)	52, 132, 499, 529, 844
StyI	CCWWGG	1 cut(s)	547
TaaI	ACNGT	3 cut(s)	401, 685, 716
TaiI	ACGT	4 cut(s)	130, 156, 179, 220
TaqI	TCGA	2 cut(s)	833, 972
TasI	AATT	9 cut(s)	116, 186, 339, 508, 645, 690, 705, 812, 919
TauI	GCSGC	1 cut(s)	441
TscAI	CASTG	3 cut(s)	352, 739, 789
TseFI	GTSAC	3 cut(s)	226, 385, 743
TseI	GCWGC	1 cut(s)	423
Tsp45I	GTSAC	3 cut(s)	226, 385, 743
TspRI	CASTG	3 cut(s)	352, 739, 789
Tth111I	GACNNNGTC	1 cut(s)	178
VneI	GTGCAC	1 cut(s)	599
VpaK11BI	GGWCC	3 cut(s)	333, 630, 848
XapI	RAATTY	2 cut(s)	116, 919
XbaI	TCTAGA	1 cut(s)	613
XceI	RCATGY	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	3 cut(s)	539, 614, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.