AT1G54740

Fantastic Four meristem regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014217
Physical Location & Seq
Forward (+)
20430769 .. 20431986
1218 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54740.1

Sequence Viewer

Length: 900 bp
ATGAGCTTCTACAAAAGAAGCTTTCACTCTTTCCTTGGCCAAACCAACACCAAAGGGATGCCGTTTGAATCCGGTCTTGGCCATGATGAGACACAATCACATGGCTTAATGTTGTGCACAGAGTATCTAGGGTTTGAGAGTTACGACATGAGGATGTCCGATAACGAGGTGGAGAACAAGATGACTTGTCATGCGGAGGTGGAGACCGAAAGGGTTGAAGCAAAGAGGAGGAAGACGAAGGAGAATGTGGTGGTGCAAGCGCAGAAAAAACAGTTTCCTCCGCCTCTCTCGTCATTAAACAGCCGTGGACAGCGATATTTTTATCTCCGTCCGGTGAGAAAAGACGGTAGATTGGAACTTACGCAAGTTATGGTCGATCGACCAGAGATTTTCCACGTTTCTAGAGTAGATGGACGGTTGAGATTACATTTTGTCGATGGTGTCGAGAATCCCATTAGAGCTTATTCTGGTCCTCAAGAAATTGTGGCCTTAGAAGAGGAACCTAAGGGTCTAGGTAATGAGAAAGAGGGAGGGGAGATTAGTAGATCTGATCTGGAATGTGGTAGAGAGATTAATGAAGACGACAATGATGGTGCATGTAATCAAGGAATGGATTTATCTATAATCAGTGATGATAGTGGTGCAAGAAGTTGGAGATGTAAAAGTAGTCATGATGTTTCGGTGAATAGTAATAATGATGTTGCACATTTCCATGATGACCATGACACGAGAGAATGGATGTACAACAGTGGTTTTAAGATCGTGGCAAGTAGGAACCATGATGAGAACAATCATCATCATTATCATCATCGTCATCGTCATCATATTCATCCATACCATCATCATAATAGTAACAATAACATGAATTTATGGACCCGGACGTACGTGAGGACCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

299

Amino Acids

34.83

Weight (kDa)

6.36

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 91 - 144 2.2e-18 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54740
fragaria_vesca FvH4_6g05230
malus_domestica MD04G1210600.v1.1 MD12G1224900.v1.1
prunus_persica Prupe.6G331500_v2.0.a1
pyrus_communis pycom04g18650 pycom12g21030
rosa_chinensis RchiOBHm_Chr3g0453941
rosa_laevigata RLG00000025493
rosa_multiflora Rmu_sc0003556.1_g000030
rosa_roxburghii Rroxscaffold_6G00430780
rosa_rugosa Rorug02G0651900
rosa_samantha Rh3AG054500 Rh3BG056100 Rh3CG055300 Rh3DG056600
rosa_wichuraiana Rw3G004180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 194, 281
AcoI YGGCCR 2 cut(s) 37, 79
AcsI RAATTY 1 cut(s) 865
AfaI GTAC 2 cut(s) 743, 884
AgsI TTSAA 2 cut(s) 68, 218
AjnI CCWGG 1 cut(s) 893
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AluBI AGCT 3 cut(s) 6, 21, 461
AluI AGCT 3 cut(s) 6, 21, 461
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 2 cut(s) 83, 197
Alw44I GTGCAC 1 cut(s) 115
AoxI GGCC 3 cut(s) 37, 79, 486
ApaLI GTGCAC 1 cut(s) 115
ApoI RAATTY 1 cut(s) 865
AseI ATTAAT 1 cut(s) 573
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 3 cut(s) 470, 873, 891
AsuC2I CCSGG 1 cut(s) 877
AsuHPI GGTGA 2 cut(s) 346, 694
AvaII GGWCC 3 cut(s) 470, 873, 891
AxyI CCTNAGG 1 cut(s) 504
BaeGI GKGCMC 1 cut(s) 119
BalI TGGCCA 2 cut(s) 39, 81
BauI CACGAG 1 cut(s) 727
BbsI GAAGAC 2 cut(s) 239, 585
Bbv12I GWGCWC 1 cut(s) 119
BccI CCATC 4 cut(s) 404, 431, 584, 846
BceAI ACGGC 2 cut(s) 46, 288
BciT130I CCWGG 1 cut(s) 895
BcnI CCSGG 1 cut(s) 877
BcoDI GTCTC 2 cut(s) 83, 197
BfaI CTAG 3 cut(s) 128, 402, 512
BglII AGATCT 1 cut(s) 545
Bme1390I CCNGG 2 cut(s) 877, 895
Bme18I GGWCC 3 cut(s) 470, 873, 891
BmgT120I GGNCC 3 cut(s) 470, 873, 891
BmiI GGNNCC 3 cut(s) 501, 776, 875
BmrFI CCNGG 2 cut(s) 877, 895
BmsI GCATC 1 cut(s) 48
BpiI GAAGAC 2 cut(s) 239, 585
BpuEI CTTGAG 1 cut(s) 459
BpuMI CCSGG 1 cut(s) 877
BsaAI YACGTR 1 cut(s) 886
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 34, 304
BsaWI WCCGGW 2 cut(s) 71, 331
Bse21I CCTNAGG 1 cut(s) 504
BseBI CCWGG 1 cut(s) 895
BseDI CCNNGG 2 cut(s) 34, 304
BseGI GGATG 4 cut(s) 63, 159, 744, 829
BseRI GAGGAG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 3 cut(s) 39, 81, 488
BsiEI CGRYCG 1 cut(s) 379
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 3 cut(s) 72, 332, 877
BsiWI CGTACG 1 cut(s) 882
BsmAI GTCTC 2 cut(s) 83, 197
BsnI GGCC 3 cut(s) 39, 81, 488
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 119
Bsp1407I TGTACA 1 cut(s) 741
Bsp143I GATC 4 cut(s) 376, 545, 550, 759
BspACI CCGC 2 cut(s) 194, 281
BspANI GGCC 3 cut(s) 39, 81, 488
BspHI TCATGA 1 cut(s) 670
BspLI GGNNCC 3 cut(s) 501, 776, 875
BspTNI GGTCTC 1 cut(s) 197
BsrGI TGTACA 1 cut(s) 741
BssECI CCNNGG 2 cut(s) 34, 304
BssMI GATC 4 cut(s) 376, 545, 550, 759
BssSI CACGAG 1 cut(s) 727
BssT1I CCWWGG 1 cut(s) 34
Bst2BI CACGAG 1 cut(s) 727
Bst2UI CCWGG 1 cut(s) 895
Bst4CI ACNGT 4 cut(s) 273, 347, 417, 749
Bst6I CTCTTC 1 cut(s) 489
BstAUI TGTACA 1 cut(s) 741
BstBAI YACGTR 1 cut(s) 886
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 2 cut(s) 490, 504
BstDSI CCRYGG 1 cut(s) 304
BstF5I GGATG 4 cut(s) 63, 159, 744, 829
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 4 cut(s) 379, 548, 553, 762
BstMAI GTCTC 2 cut(s) 83, 197
BstMBI GATC 4 cut(s) 376, 545, 550, 759
BstMCI CGRYCG 1 cut(s) 379
BstNI CCWGG 1 cut(s) 895
BstNSI RCATGY 1 cut(s) 600
BstSCI CCNGG 2 cut(s) 875, 893
BstSLI GKGCMC 1 cut(s) 119
BstV2I GAAGAC 2 cut(s) 239, 585
BstX2I RGATCY 1 cut(s) 545
BstYI RGATCY 1 cut(s) 545
Bsu36I CCTNAGG 1 cut(s) 504
BsuRI GGCC 3 cut(s) 39, 81, 488
BtgI CCRYGG 1 cut(s) 304
BtsCI GGATG 4 cut(s) 63, 159, 744, 829
BtsIMutI CAGTG 2 cut(s) 634, 754
Cac8I GCNNGC 1 cut(s) 258
CciI TCATGA 1 cut(s) 670
CfoI GCGC 1 cut(s) 262
Cfr13I GGNCC 3 cut(s) 470, 873, 891
CsiI ACCWGGT 1 cut(s) 893
Csp6I GTAC 2 cut(s) 742, 883
CviJI RGCY 8 cut(s) 6, 21, 39, 81, 105, 303, 461, 488
CviKI_1 RGCY 8 cut(s) 6, 21, 39, 81, 105, 303, 461, 488
CviQI GTAC 2 cut(s) 742, 883
DdeI CTNAG 2 cut(s) 490, 504
DpnI GATC 4 cut(s) 378, 547, 552, 761
DpnII GATC 4 cut(s) 376, 545, 550, 759
EaeI YGGCCR 2 cut(s) 37, 79
Eam1104I CTCTTC 1 cut(s) 489
EarI CTCTTC 1 cut(s) 489
EciI GGCGGA 1 cut(s) 270
Eco130I CCWWGG 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 3 cut(s) 470, 873, 891
Eco81I CCTNAGG 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 893
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FokI GGATG 4 cut(s) 70, 166, 751, 816
FspBI CTAG 3 cut(s) 128, 402, 512
GlaI GCGC 1 cut(s) 261
HaeIII GGCC 3 cut(s) 39, 81, 488
HapII CCGG 3 cut(s) 72, 332, 877
HhaI GCGC 1 cut(s) 262
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 2 cut(s) 68, 448
HpaII CCGG 3 cut(s) 72, 332, 877
HphI GGTGA 2 cut(s) 346, 694
Hpy166II GTNNAC 2 cut(s) 117, 308
Hpy188I TCNGA 2 cut(s) 160, 550
Hpy188III TCNNGA 5 cut(s) 402, 445, 476, 554, 671
Hpy8I GTNNAC 2 cut(s) 117, 308
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 4 cut(s) 273, 347, 417, 749
HpyCH4IV ACGT 3 cut(s) 396, 881, 885
HpyCH4V TGCA 5 cut(s) 117, 256, 596, 644, 704
HpyF3I CTNAG 2 cut(s) 490, 504
HpySE526I ACGT 3 cut(s) 396, 881, 885
HspAI GCGC 1 cut(s) 260
Kzo9I GATC 4 cut(s) 376, 545, 550, 759
LpnPI CCDG 7 cut(s) 85, 345, 396, 453, 539, 880, 890
LweI GCATC 1 cut(s) 48
MabI ACCWGGT 1 cut(s) 893
MaeI CTAG 3 cut(s) 128, 402, 512
MaeII ACGT 3 cut(s) 396, 881, 885
MaeIII GTNAC 2 cut(s) 140, 851
MalI GATC 4 cut(s) 378, 547, 552, 761
MboI GATC 4 cut(s) 376, 545, 550, 759
MboII GAAGA 3 cut(s) 244, 506, 590
MflI RGATCY 1 cut(s) 545
MhlI GDGCHC 1 cut(s) 119
MlsI TGGCCA 2 cut(s) 39, 81
MluCI AATT 2 cut(s) 480, 865
MluNI TGGCCA 2 cut(s) 39, 81
MmeI TCCRAC 1 cut(s) 632
Mox20I TGGCCA 2 cut(s) 39, 81
MscI TGGCCA 2 cut(s) 39, 81
MseI TTAA 4 cut(s) 107, 296, 573, 756
MslI CAYNNNNRTG 2 cut(s) 152, 711
Msp20I TGGCCA 2 cut(s) 39, 81
MspI CCGG 3 cut(s) 72, 332, 877
MspR9I CCNGG 2 cut(s) 877, 895
MvaI CCWGG 1 cut(s) 895
NciI CCSGG 1 cut(s) 877
NdeII GATC 4 cut(s) 376, 545, 550, 759
NlaIV GGNNCC 3 cut(s) 501, 776, 875
NspI RCATGY 1 cut(s) 600
PagI TCATGA 1 cut(s) 670
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PfeI GAWTC 2 cut(s) 68, 448
Pfl23II CGTACG 1 cut(s) 882
Ple19I CGATCG 1 cut(s) 379
Ppu21I YACGTR 1 cut(s) 886
PshBI ATTAAT 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 893
PspGI CCWGG 1 cut(s) 893
PspLI CGTACG 1 cut(s) 882
PspN4I GGNNCC 3 cut(s) 501, 776, 875
PspPI GGNCC 3 cut(s) 470, 873, 891
PsuI RGATCY 1 cut(s) 545
PvuI CGATCG 1 cut(s) 379
RsaI GTAC 2 cut(s) 743, 884
RsaNI GTAC 2 cut(s) 742, 883
RseI CAYNNNNRTG 2 cut(s) 152, 711
SaqAI TTAA 4 cut(s) 107, 296, 573, 756
Sau3AI GATC 4 cut(s) 376, 545, 550, 759
Sau96I GGNCC 3 cut(s) 470, 873, 891
ScrFI CCNGG 2 cut(s) 877, 895
SduI GDGCHC 1 cut(s) 119
SexAI ACCWGGT 1 cut(s) 893
SfaNI GCATC 1 cut(s) 48
SinI GGWCC 3 cut(s) 470, 873, 891
SmiMI CAYNNNNRTG 2 cut(s) 152, 711
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
Sse9I AATT 2 cut(s) 480, 865
SsiI CCGC 2 cut(s) 194, 281
SspMI CTAG 3 cut(s) 128, 402, 512
StyD4I CCNGG 2 cut(s) 875, 893
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 4 cut(s) 273, 347, 417, 749
TaiI ACGT 3 cut(s) 399, 884, 888
TaqI TCGA 4 cut(s) 375, 379, 435, 444
TaqII GACCGA 1 cut(s) 221
TasI AATT 2 cut(s) 480, 865
TatI WGTACW 1 cut(s) 741
TfiI GAWTC 2 cut(s) 68, 448
Tru1I TTAA 4 cut(s) 107, 296, 573, 756
Tru9I TTAA 4 cut(s) 107, 296, 573, 756
TscAI CASTG 2 cut(s) 634, 754
TspDTI ATGAA 3 cut(s) 591, 818, 878
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 2 cut(s) 634, 754
VneI GTGCAC 1 cut(s) 115
VpaK11BI GGWCC 3 cut(s) 470, 873, 891
VspI ATTAAT 1 cut(s) 573
XapI RAATTY 1 cut(s) 865
XbaI TCTAGA 1 cut(s) 401
XceI RCATGY 1 cut(s) 600
XspI CTAG 3 cut(s) 128, 402, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.