FvH4_6g05230

Protein FANTASTIC FOUR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014217
Physical Location & Seq
Forward (+)
2955302 .. 2956222
921 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05230.t1

Sequence Viewer

Length: 921 bp
ATGATGAGCTTCTGTAGAAAGCTAACCCCTCACTCTCTTCTCGGCCTCACCACCACCACAACAACCACCGCTGCTCCCCCCACCACGAATGAAAACCTCCACCACTACATTCCCTCCCTGACGGGAGGGCTACTAGGGTTAGTCACTCCAACCGCCAATGACGTCACCCACTGTCAGCCTCTTGTTTTGGAATCTTCGTCCGAAAAGAAACAAACCTCCTTGCCACCGCTCCCGTCATTTTTGCCGCCTCCTGCGACCAAGGTGGTGTCTGCAGGAAGCGGTGACATCGGCGGGTTCGGCTTCTTAGACGAAGTCGGTGGCGGGAAGGACGGGTTTGTGTCATGCACGGAGAGTCTAGGGTTTGAGAGCTCGGACGAGATCATGCGAGTTGACGATCAGGTTGAGCCAGATGAGGAGGAGGTTGAGCTGAGCTTGATGAGGAAGTGTGAGAACAAGAGATCCGAATGGAGGAGAATGAGAGATAAGAGGTCAGTGGATAAAGACAACAATAAGTTTCCACCGCCGATCTCTTCCTTGAATAAGAACGGACACCCGAACTTCTATCTCCGGCCGGTGAGGAAGGACGGAAGGCTGGAGCTCACCGAGGTGAGGATCCATAGGCCGGAGATTCTGCGCGCTCATCGCGAAGATGGACGGTTGAGGCTGCATCTCATTAGCCATGACCAAGAGCAAGAAGAAGACATTGAAGAAGAAGGAGTTGATGTTGAAGATATTAGTAATGTCGAGGAGAATGTAGAAACAGAAAGTAGTGTAAATGATGGGGATCAGTGGAAGATGGGGGTGGCTGGAGGAGACGGGTTTAGGCGGTGTCATGTGGCGAGGAGTAGCCACCACCACCACCACCACCATCACCACCACAACAACCACCATGTGTGGAGCCAGCAGCATTGTGTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

307

Amino Acids

34.4

Weight (kDa)

5.76

Isoelectric Point (pI)

65.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 171 - 224 8.3e-21 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54740
fragaria_vesca FvH4_6g05230
malus_domestica MD04G1210600.v1.1 MD12G1224900.v1.1
prunus_persica Prupe.6G331500_v2.0.a1
pyrus_communis pycom04g18650 pycom12g21030
rosa_chinensis RchiOBHm_Chr3g0453941
rosa_laevigata RLG00000025493
rosa_multiflora Rmu_sc0003556.1_g000030
rosa_roxburghii Rroxscaffold_6G00430780
rosa_rugosa Rorug02G0651900
rosa_samantha Rh3AG054500 Rh3BG056100 Rh3CG055300 Rh3DG056600
rosa_wichuraiana Rw3G004180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AccBSI CCGCTC 1 cut(s) 229
AccII CGCG 2 cut(s) 636, 645
AciI CCGC 9 cut(s) 69, 153, 227, 245, 279, 291, 321, 521, 826
AclWI GGATC 4 cut(s) 453, 607, 620, 792
AcoI YGGCCR 1 cut(s) 569
AcyI GRCGYC 1 cut(s) 162
AdeI CACNNNGTG 1 cut(s) 892
AfiI CCNNNNNNNGG 3 cut(s) 468, 609, 622
AgsI TTSAA 3 cut(s) 538, 707, 728
AleI CACNNNNGTG 1 cut(s) 605
AloI GAACNNNNNNTCC 2 cut(s) 443, 475
AluBI AGCT 6 cut(s) 9, 22, 369, 427, 432, 598
AluI AGCT 6 cut(s) 9, 22, 369, 427, 432, 598
Alw21I GWGCWC 2 cut(s) 371, 600
Alw26I GTCTC 1 cut(s) 807
AlwI GGATC 4 cut(s) 453, 607, 620, 792
AoxI GGCC 3 cut(s) 43, 569, 620
ApeKI GCWGC 3 cut(s) 71, 664, 904
AspLEI GCGC 2 cut(s) 636, 638
AsuHPI GGTGA 7 cut(s) 40, 157, 293, 586, 592, 619, 863
BamHI GGATCC 1 cut(s) 612
BanII GRGCYC 2 cut(s) 371, 600
BbsI GAAGAC 1 cut(s) 705
Bbv12I GWGCWC 2 cut(s) 371, 600
BbvI GCAGC 3 cut(s) 58, 651, 916
BccI CCATC 4 cut(s) 644, 773, 790, 876
BcoDI GTCTC 1 cut(s) 807
BfaI CTAG 2 cut(s) 134, 356
BfmI CTRYAG 2 cut(s) 13, 270
BisI GCNGC 4 cut(s) 72, 245, 665, 905
BlpI GCTNAGC 1 cut(s) 428
BlsI GCNGC 4 cut(s) 73, 246, 666, 906
BmiI GGNNCC 2 cut(s) 614, 899
BmsI GCATC 1 cut(s) 676
BpiI GAAGAC 1 cut(s) 705
BpmI CTGGAG 2 cut(s) 614, 828
Bpu1102I GCTNAGC 1 cut(s) 428
BsaBI GATNNNNATC 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 258, 603
BsaXI ACNNNNNCTCC 6 cut(s) 58, 88, 98, 128, 708, 738
Bsc4I CCNNNNNNNGG 3 cut(s) 468, 609, 622
Bse118I RCCGGY 1 cut(s) 571
Bse8I GATNNNNATC 1 cut(s) 783
BseDI CCNNGG 2 cut(s) 258, 603
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 3 cut(s) 468, 609, 622
BseMII CTCAG 1 cut(s) 419
BsePI GCGCGC 1 cut(s) 634
BseRI GAGGAG 6 cut(s) 428, 431, 484, 761, 825, 856
BseX3I CGGCCG 1 cut(s) 569
BseXI GCAGC 3 cut(s) 58, 651, 916
Bsh1236I CGCG 2 cut(s) 636, 645
Bsh1285I CGRYCG 1 cut(s) 572
BshFI GGCC 3 cut(s) 45, 571, 622
BsiEI CGRYCG 1 cut(s) 572
BsiHKAI GWGCWC 2 cut(s) 371, 600
BsiSI CCGG 3 cut(s) 568, 572, 623
BslI CCNNNNNNNGG 3 cut(s) 468, 609, 622
BsmAI GTCTC 1 cut(s) 807
BsmBI CGTCTC 1 cut(s) 807
BsnI GGCC 3 cut(s) 45, 571, 622
Bsp1286I GDGCHC 2 cut(s) 371, 600
Bsp143I GATC 6 cut(s) 378, 394, 458, 525, 612, 784
Bsp1720I GCTNAGC 1 cut(s) 428
Bsp68I TCGCGA 1 cut(s) 645
BspACI CCGC 9 cut(s) 69, 153, 227, 245, 279, 291, 321, 521, 826
BspANI GGCC 3 cut(s) 45, 571, 622
BspCNI CTCAG 1 cut(s) 420
BspFNI CGCG 2 cut(s) 636, 645
BspLI GGNNCC 2 cut(s) 614, 899
BspMAI CTGCAG 1 cut(s) 274
BspPI GGATC 4 cut(s) 453, 607, 620, 792
BsrBI CCGCTC 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 571
BssAI RCCGGY 1 cut(s) 571
BssECI CCNNGG 2 cut(s) 258, 603
BssHII GCGCGC 1 cut(s) 634
BssMI GATC 6 cut(s) 378, 394, 458, 525, 612, 784
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 173, 657
Bst6I CTCTTC 2 cut(s) 42, 535
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 636, 902
BstDEI CTNAG 2 cut(s) 304, 428
BstFNI CGCG 2 cut(s) 636, 645
BstHHI GCGC 2 cut(s) 636, 638
BstKTI GATC 6 cut(s) 381, 397, 461, 528, 615, 787
BstMAI GTCTC 1 cut(s) 807
BstMBI GATC 6 cut(s) 378, 394, 458, 525, 612, 784
BstMCI CGRYCG 1 cut(s) 572
BstMWI GCNNNNNNNGC 2 cut(s) 297, 642
BstSFI CTRYAG 2 cut(s) 13, 270
BstUI CGCG 2 cut(s) 636, 645
BstV1I GCAGC 3 cut(s) 58, 651, 916
BstV2I GAAGAC 1 cut(s) 705
BstX2I RGATCY 2 cut(s) 458, 612
BstYI RGATCY 2 cut(s) 458, 612
BstZI CGGCCG 1 cut(s) 569
BsuRI GGCC 3 cut(s) 45, 571, 622
BtgZI GCGATG 1 cut(s) 626
BtsIMutI CAGTG 3 cut(s) 169, 498, 794
BtuMI TCGCGA 1 cut(s) 645
Cac8I GCNNGC 2 cut(s) 636, 902
CfoI GCGC 2 cut(s) 636, 638
Cfr10I RCCGGY 1 cut(s) 571
CviAII CATG 5 cut(s) 342, 382, 680, 833, 890
DdeI CTNAG 2 cut(s) 304, 428
DpnI GATC 6 cut(s) 380, 396, 460, 527, 614, 786
DpnII GATC 6 cut(s) 378, 394, 458, 525, 612, 784
DraIII CACNNNGTG 1 cut(s) 892
EaeI YGGCCR 1 cut(s) 569
EagI CGGCCG 1 cut(s) 569
Eam1104I CTCTTC 2 cut(s) 42, 535
EarI CTCTTC 2 cut(s) 42, 535
Ecl136II GAGCTC 2 cut(s) 369, 598
EclXI CGGCCG 1 cut(s) 569
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 2 cut(s) 371, 600
Eco52I CGGCCG 1 cut(s) 569
Eco53kI GAGCTC 2 cut(s) 369, 598
EcoICRI GAGCTC 2 cut(s) 369, 598
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 2 cut(s) 371, 600
ErhI CCWWGG 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 807
FaeI CATG 5 cut(s) 345, 385, 683, 836, 893
FaiI YATR 6 cut(s) 343, 383, 618, 681, 834, 891
FatI CATG 5 cut(s) 341, 381, 679, 832, 889
FauI CCCGC 2 cut(s) 284, 314
Fnu4HI GCNGC 4 cut(s) 72, 245, 665, 905
FriOI GRGCYC 2 cut(s) 371, 600
Fsp4HI GCNGC 4 cut(s) 72, 245, 665, 905
FspBI CTAG 2 cut(s) 134, 356
GlaI GCGC 2 cut(s) 635, 637
GluI GCNGC 4 cut(s) 72, 245, 665, 905
GsuI CTGGAG 2 cut(s) 614, 828
HaeIII GGCC 3 cut(s) 45, 571, 622
HapII CCGG 3 cut(s) 568, 572, 623
HhaI GCGC 2 cut(s) 636, 638
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 5 cut(s) 345, 385, 683, 836, 893
Hin6I GCGC 2 cut(s) 634, 636
HinP1I GCGC 2 cut(s) 634, 636
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HinfI GANTC 3 cut(s) 191, 352, 628
HpaII CCGG 3 cut(s) 568, 572, 623
HphI GGTGA 7 cut(s) 40, 157, 293, 586, 592, 619, 863
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 3 cut(s) 202, 373, 463
Hpy188III TCNNGA 1 cut(s) 644
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 4 cut(s) 319, 574, 582, 707
HpyCH4III ACNGT 2 cut(s) 173, 657
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 272, 345, 667
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 642
HpyF3I CTNAG 2 cut(s) 304, 428
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 5 cut(s) 345, 385, 683, 836, 893
HspAI GCGC 2 cut(s) 634, 636
Kzo9I GATC 6 cut(s) 378, 394, 458, 525, 612, 784
LmnI GCTCC 4 cut(s) 79, 234, 595, 897
Lsp1109I GCAGC 3 cut(s) 58, 651, 916
LweI GCATC 1 cut(s) 676
MaeI CTAG 2 cut(s) 134, 356
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 3 cut(s) 142, 163, 281
MalI GATC 6 cut(s) 380, 396, 460, 527, 614, 786
MbiI CCGCTC 1 cut(s) 229
MboI GATC 6 cut(s) 378, 394, 458, 525, 612, 784
MflI RGATCY 2 cut(s) 458, 612
MhlI GDGCHC 2 cut(s) 371, 600
MlyI GAGTC 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 605
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 3 cut(s) 568, 572, 623
MvnI CGCG 2 cut(s) 636, 645
MwoI GCNNNNNNNGC 2 cut(s) 297, 642
NdeII GATC 6 cut(s) 378, 394, 458, 525, 612, 784
NlaIII CATG 5 cut(s) 345, 385, 683, 836, 893
NlaIV GGNNCC 2 cut(s) 614, 899
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 3 cut(s) 142, 163, 281
NruI TCGCGA 1 cut(s) 645
OliI CACNNNNGTG 1 cut(s) 605
PauI GCGCGC 1 cut(s) 634
PfeI GAWTC 2 cut(s) 191, 628
PflFI GACNNNGTC 1 cut(s) 311
PkrI GCNGC 4 cut(s) 73, 246, 666, 906
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
Psp124BI GAGCTC 2 cut(s) 371, 600
PspN4I GGNNCC 2 cut(s) 614, 899
PstI CTGCAG 1 cut(s) 274
PsuI RGATCY 2 cut(s) 458, 612
PsyI GACNNNGTC 1 cut(s) 311
PteI GCGCGC 1 cut(s) 634
RruI TCGCGA 1 cut(s) 645
RseI CAYNNNNRTG 1 cut(s) 605
SacI GAGCTC 2 cut(s) 371, 600
SatI GCNGC 4 cut(s) 72, 245, 665, 905
Sau3AI GATC 6 cut(s) 378, 394, 458, 525, 612, 784
SchI GAGTC 1 cut(s) 361
SduI GDGCHC 2 cut(s) 371, 600
SfaNI GCATC 1 cut(s) 676
SfcI CTRYAG 2 cut(s) 13, 270
SmiMI CAYNNNNRTG 1 cut(s) 605
SsiI CCGC 9 cut(s) 69, 153, 227, 245, 279, 291, 321, 521, 826
SspMI CTAG 2 cut(s) 134, 356
SstI GAGCTC 2 cut(s) 371, 600
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 173, 657
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 744
TauI GCSGC 1 cut(s) 247
TfiI GAWTC 2 cut(s) 191, 628
TscAI CASTG 3 cut(s) 176, 498, 794
TseFI GTSAC 3 cut(s) 142, 163, 281
TseI GCWGC 3 cut(s) 71, 664, 904
Tsp45I GTSAC 3 cut(s) 142, 163, 281
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 3 cut(s) 362, 561, 600
TspRI CASTG 3 cut(s) 176, 498, 794
Tth111I GACNNNGTC 1 cut(s) 311
XspI CTAG 2 cut(s) 134, 356
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.