Rw3G004180

Protein FANTASTIC FOUR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0014217
Physical Location & Seq
Forward (+)
3681303 .. 3683125
1823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G004180.1

Sequence Viewer

Length: 1038 bp
ATGACCCTTTTTGTTCTAATCGTTCCACTACTGACTTTTCTCTTCCTCTCTCCTGCGGCTTATTACAAGCTTCTTAATCTCCCAATCATGATGAGCTTCTGTAGAAAAATCACCCCTCACTCTCTTCTCGGCCTCACCGCCACCACCACAACCACCGCAACTCCTTCCACCACCAATGAAAACCTCCACCACTACATTCCTTCTCTGACGGGAGGACTATTAGGGTTAGTTACTGCAACCGCCAATGACGTCACGCAGCGTCATCCTCTTGTTTTGGAATCTTCCTCCGTAAAGAAACAGATCTCGTTGTCATCTCTCCCATCGTTTTTACCACCTCCTGCAACCAAGGCTGTAGGAGGCGGTGACATCGGCGGGTTCGGCTTCCTAGACGAAGTCGGTGGCGGCGTGGACGGGTTTGTGTCATGCACCGAGAGTCTAGGGTTTGAGAGCTCGGATGAGATCATGCGAGTGGACGATCAGGTTGAGCAGGATGACGAGAAGGATGAGCTCAGGTTGATGAGGCAGTCTGAGAACAAGAGGACCAAATGGAGGAGGATGAGAGATAAGAGGTCGTCGGTGGATAAGGTCAACAATAAGTTTCCGCCGCCGATCTCTTCCTTGAATAAGAACGGACACCCGAATTTCTATCTCCGGCCGGTGAGGAAAGACGGGAGGTTGGAACTCACAGAGGTGAAGATTCATAGGCCAGAGGTTCTACGCGCTCATCGCGAAGATGGACGGTTGACGTTGCATCTTATTACCCATGACCAAGAAGAAGACTTAATAGAAGAAGAGCAAGAAGAAGAAATTGAAGAGGAAGGAGTTGATGTTGAAGATATTAATAAGGTCGAGGAAGGGAAAGAGAATGTAGAAATAGAAAGTAGTGTGAATGTTGGGGATCAGTGGAAGATGGGGTTGGCTGGAGGAGAAGGGTTTAGGCGGTGTCAGGATGTGGCCGGGAGTAGCCACCATGTGTACCACCATCACCACCACCACAACACCCACCCTGTGTGGAGCCAGCAGCATTGTGTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

345

Amino Acids

38.72

Weight (kDa)

5.6

Isoelectric Point (pI)

64.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 199 - 252 9.7e-21 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54740
fragaria_vesca FvH4_6g05230
malus_domestica MD04G1210600.v1.1 MD12G1224900.v1.1
prunus_persica Prupe.6G331500_v2.0.a1
pyrus_communis pycom04g18650 pycom12g21030
rosa_chinensis RchiOBHm_Chr3g0453941
rosa_laevigata RLG00000025493
rosa_multiflora Rmu_sc0003556.1_g000030
rosa_roxburghii Rroxscaffold_6G00430780
rosa_rugosa Rorug02G0651900
rosa_samantha Rh3AG054500 Rh3BG056100 Rh3CG055300 Rh3DG056600
rosa_wichuraiana Rw3G004180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 252
AccII CGCG 2 cut(s) 720, 729
AclWI GGATC 1 cut(s) 906
AcoI YGGCCR 2 cut(s) 653, 954
AcsI RAATTY 1 cut(s) 640
AcyI GRCGYC 1 cut(s) 249
AdeI CACNNNGTG 2 cut(s) 973, 1009
AfaI GTAC 1 cut(s) 977
AfiI CCNNNNNNNGG 1 cut(s) 549
AgsI TTSAA 3 cut(s) 622, 812, 833
AjuI GAANNNNNNNTTGG 2 cut(s) 899, 931
AleI CACNNNNGTG 1 cut(s) 689
AluBI AGCT 4 cut(s) 70, 96, 450, 508
AluI AGCT 4 cut(s) 70, 96, 450, 508
Alw21I GWGCWC 2 cut(s) 452, 510
AlwI GGATC 1 cut(s) 906
AoxI GGCC 4 cut(s) 130, 653, 704, 954
ApeKI GCWGC 2 cut(s) 256, 1021
ApoI RAATTY 1 cut(s) 640
AseI ATTAAT 1 cut(s) 840
AspLEI GCGC 1 cut(s) 722
AspS9I GGNCC 1 cut(s) 540
AsuC2I CCSGG 1 cut(s) 958
AsuHPI GGTGA 6 cut(s) 103, 127, 374, 670, 703, 977
AvaII GGWCC 1 cut(s) 540
BanII GRGCYC 2 cut(s) 452, 510
BbsI GAAGAC 1 cut(s) 783
Bbv12I GWGCWC 2 cut(s) 452, 510
BbvI GCAGC 2 cut(s) 268, 1033
BccI CCATC 4 cut(s) 328, 728, 904, 990
BcnI CCSGG 1 cut(s) 958
BfaI CTAG 2 cut(s) 386, 437
BfmI CTRYAG 2 cut(s) 100, 351
BglII AGATCT 1 cut(s) 300
BisI GCNGC 5 cut(s) 57, 257, 403, 605, 1022
BlsI GCNGC 5 cut(s) 58, 258, 404, 606, 1023
Bme1390I CCNGG 1 cut(s) 958
Bme18I GGWCC 1 cut(s) 540
BmgT120I GGNCC 1 cut(s) 540
BmiI GGNNCC 1 cut(s) 1016
BmrFI CCNGG 1 cut(s) 958
BmsI GCATC 1 cut(s) 760
BpiI GAAGAC 1 cut(s) 783
BpmI CTGGAG 1 cut(s) 942
Bpu10I CCTNAGC 1 cut(s) 509
BpuMI CCSGG 1 cut(s) 958
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 345
BsaXI ACNNNNNCTCC 4 cut(s) 145, 175, 813, 843
Bsc4I CCNNNNNNNGG 1 cut(s) 549
Bse118I RCCGGY 1 cut(s) 655
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 6 cut(s) 262, 460, 496, 508, 561, 955
BseLI CCNNNNNNNGG 1 cut(s) 549
BseMII CTCAG 2 cut(s) 519, 523
BseRI GAGGAG 2 cut(s) 565, 939
BseX3I CGGCCG 1 cut(s) 653
BseXI GCAGC 2 cut(s) 268, 1033
Bsh1236I CGCG 2 cut(s) 720, 729
Bsh1285I CGRYCG 1 cut(s) 656
BshFI GGCC 4 cut(s) 132, 655, 706, 956
BsiEI CGRYCG 1 cut(s) 656
BsiHKAI GWGCWC 2 cut(s) 452, 510
BsiSI CCGG 3 cut(s) 652, 656, 957
BslI CCNNNNNNNGG 1 cut(s) 549
BsnI GGCC 4 cut(s) 132, 655, 706, 956
Bsp1286I GDGCHC 2 cut(s) 452, 510
Bsp143I GATC 5 cut(s) 300, 459, 475, 609, 898
Bsp68I TCGCGA 1 cut(s) 729
BspANI GGCC 4 cut(s) 132, 655, 706, 956
BspCNI CTCAG 2 cut(s) 520, 522
BspFNI CGCG 2 cut(s) 720, 729
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 1016
BspPI GGATC 1 cut(s) 906
BspQI GCTCTTC 1 cut(s) 786
BsrFI RCCGGY 1 cut(s) 655
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 5 cut(s) 300, 459, 475, 609, 898
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 345
Bst4CI ACNGT 1 cut(s) 741
Bst6I CTCTTC 5 cut(s) 47, 129, 619, 786, 807
BstACI GRCGYC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 1019
BstDEI CTNAG 2 cut(s) 509, 528
BstF5I GGATG 6 cut(s) 262, 460, 496, 508, 561, 955
BstFNI CGCG 2 cut(s) 720, 729
BstHHI GCGC 1 cut(s) 722
BstKTI GATC 5 cut(s) 303, 462, 478, 612, 901
BstMBI GATC 5 cut(s) 300, 459, 475, 609, 898
BstMCI CGRYCG 1 cut(s) 656
BstMWI GCNNNNNNNGC 3 cut(s) 347, 378, 726
BstSCI CCNGG 1 cut(s) 956
BstSFI CTRYAG 2 cut(s) 100, 351
BstUI CGCG 2 cut(s) 720, 729
BstV1I GCAGC 2 cut(s) 268, 1033
BstV2I GAAGAC 1 cut(s) 783
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
BstZI CGGCCG 1 cut(s) 653
BsuRI GGCC 4 cut(s) 132, 655, 706, 956
BtgZI GCGATG 1 cut(s) 710
BtsCI GGATG 6 cut(s) 262, 460, 496, 508, 561, 955
BtsIMutI CAGTG 1 cut(s) 908
BtuMI TCGCGA 1 cut(s) 729
Cac8I GCNNGC 1 cut(s) 1019
CciI TCATGA 1 cut(s) 87
CfoI GCGC 1 cut(s) 722
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 1 cut(s) 540
CseI GACGC 1 cut(s) 248
Csp6I GTAC 1 cut(s) 976
CviAII CATG 5 cut(s) 88, 423, 463, 764, 971
CviQI GTAC 1 cut(s) 976
DdeI CTNAG 2 cut(s) 509, 528
DpnI GATC 5 cut(s) 302, 461, 477, 611, 900
DpnII GATC 5 cut(s) 300, 459, 475, 609, 898
DraIII CACNNNGTG 2 cut(s) 973, 1009
EaeI YGGCCR 2 cut(s) 653, 954
EagI CGGCCG 1 cut(s) 653
Eam1104I CTCTTC 5 cut(s) 47, 129, 619, 786, 807
EarI CTCTTC 5 cut(s) 47, 129, 619, 786, 807
EciI GGCGGA 1 cut(s) 591
Ecl136II GAGCTC 2 cut(s) 450, 508
EclXI CGGCCG 1 cut(s) 653
Eco130I CCWWGG 1 cut(s) 345
Eco24I GRGCYC 2 cut(s) 452, 510
Eco47I GGWCC 1 cut(s) 540
Eco52I CGGCCG 1 cut(s) 653
Eco53kI GAGCTC 2 cut(s) 450, 508
EcoICRI GAGCTC 2 cut(s) 450, 508
EcoT14I CCWWGG 1 cut(s) 345
EcoT38I GRGCYC 2 cut(s) 452, 510
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 5 cut(s) 91, 426, 466, 767, 974
FaiI YATR 6 cut(s) 89, 424, 464, 702, 765, 972
FatI CATG 5 cut(s) 87, 422, 462, 763, 970
FauI CCCGC 1 cut(s) 365
Fnu4HI GCNGC 5 cut(s) 57, 257, 403, 605, 1022
FokI GGATG 6 cut(s) 249, 467, 503, 515, 568, 962
FriOI GRGCYC 2 cut(s) 452, 510
Fsp4HI GCNGC 5 cut(s) 57, 257, 403, 605, 1022
FspBI CTAG 2 cut(s) 386, 437
GlaI GCGC 1 cut(s) 721
GluI GCNGC 5 cut(s) 57, 257, 403, 605, 1022
GsuI CTGGAG 1 cut(s) 942
HaeIII GGCC 4 cut(s) 132, 655, 706, 956
HapII CCGG 3 cut(s) 652, 656, 957
HgaI GACGC 1 cut(s) 248
HhaI GCGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 5 cut(s) 91, 426, 466, 767, 974
Hin6I GCGC 1 cut(s) 720
HinP1I GCGC 1 cut(s) 720
HincII GTYRAC 2 cut(s) 589, 744
HindII GTYRAC 2 cut(s) 589, 744
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 3 cut(s) 278, 433, 697
HpaII CCGG 3 cut(s) 652, 656, 957
HphI GGTGA 6 cut(s) 103, 127, 374, 670, 703, 977
Hpy166II GTNNAC 5 cut(s) 409, 472, 589, 744, 976
Hpy188I TCNGA 3 cut(s) 207, 454, 529
Hpy188III TCNNGA 3 cut(s) 88, 728, 947
Hpy8I GTNNAC 5 cut(s) 409, 472, 589, 744, 976
Hpy99I CGWCG 1 cut(s) 577
HpyAV CCTTC 6 cut(s) 174, 210, 493, 812, 848, 923
HpyCH4III ACNGT 1 cut(s) 741
HpyCH4IV ACGT 2 cut(s) 249, 746
HpyCH4V TGCA 4 cut(s) 236, 341, 426, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 347, 378, 726
HpyF3I CTNAG 2 cut(s) 509, 528
HpySE526I ACGT 2 cut(s) 249, 746
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 5 cut(s) 91, 426, 466, 767, 974
HspAI GCGC 1 cut(s) 720
Kzo9I GATC 5 cut(s) 300, 459, 475, 609, 898
LguI GCTCTTC 1 cut(s) 786
LmnI GCTCC 1 cut(s) 1014
Lsp1109I GCAGC 2 cut(s) 268, 1033
LweI GCATC 1 cut(s) 760
MaeI CTAG 2 cut(s) 386, 437
MaeII ACGT 2 cut(s) 249, 746
MaeIII GTNAC 3 cut(s) 229, 250, 362
MalI GATC 5 cut(s) 302, 461, 477, 611, 900
MboI GATC 5 cut(s) 300, 459, 475, 609, 898
MflI RGATCY 1 cut(s) 300
MhlI GDGCHC 2 cut(s) 452, 510
MluCI AATT 2 cut(s) 640, 807
MlyI GAGTC 1 cut(s) 442
MmeI TCCRAC 1 cut(s) 657
MseI TTAA 3 cut(s) 75, 782, 840
MslI CAYNNNNRTG 2 cut(s) 467, 689
MspI CCGG 3 cut(s) 652, 656, 957
MspR9I CCNGG 1 cut(s) 958
MvnI CGCG 2 cut(s) 720, 729
MwoI GCNNNNNNNGC 3 cut(s) 347, 378, 726
NciI CCSGG 1 cut(s) 958
NdeII GATC 5 cut(s) 300, 459, 475, 609, 898
NlaIII CATG 5 cut(s) 91, 426, 466, 767, 974
NlaIV GGNNCC 1 cut(s) 1016
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 2 cut(s) 250, 362
NruI TCGCGA 1 cut(s) 729
OliI CACNNNNGTG 1 cut(s) 689
PagI TCATGA 1 cut(s) 87
PciSI GCTCTTC 1 cut(s) 786
PcsI WCGNNNNNNNCGW 1 cut(s) 402
PfeI GAWTC 2 cut(s) 278, 697
PflFI GACNNNGTC 1 cut(s) 392
PkrI GCNGC 5 cut(s) 58, 258, 404, 606, 1023
PleI GAGTC 1 cut(s) 441
PpsI GAGTC 1 cut(s) 441
PshBI ATTAAT 1 cut(s) 840
Psp124BI GAGCTC 2 cut(s) 452, 510
PspN4I GGNNCC 1 cut(s) 1016
PspPI GGNCC 1 cut(s) 540
PsuI RGATCY 1 cut(s) 300
PsyI GACNNNGTC 1 cut(s) 392
RruI TCGCGA 1 cut(s) 729
RsaI GTAC 1 cut(s) 977
RsaNI GTAC 1 cut(s) 976
RseI CAYNNNNRTG 2 cut(s) 467, 689
SacI GAGCTC 2 cut(s) 452, 510
SapI GCTCTTC 1 cut(s) 786
SaqAI TTAA 3 cut(s) 75, 782, 840
SatI GCNGC 5 cut(s) 57, 257, 403, 605, 1022
Sau3AI GATC 5 cut(s) 300, 459, 475, 609, 898
Sau96I GGNCC 1 cut(s) 540
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 1 cut(s) 958
SduI GDGCHC 2 cut(s) 452, 510
SfaNI GCATC 1 cut(s) 760
SfcI CTRYAG 2 cut(s) 100, 351
SinI GGWCC 1 cut(s) 540
SmiMI CAYNNNNRTG 2 cut(s) 467, 689
Sse9I AATT 2 cut(s) 640, 807
SspMI CTAG 2 cut(s) 386, 437
SstI GAGCTC 2 cut(s) 452, 510
StyD4I CCNGG 1 cut(s) 956
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 741
TaiI ACGT 2 cut(s) 252, 749
TaqI TCGA 1 cut(s) 849
TasI AATT 2 cut(s) 640, 807
TauI GCSGC 3 cut(s) 59, 405, 607
TfiI GAWTC 2 cut(s) 278, 697
Tru1I TTAA 3 cut(s) 75, 782, 840
Tru9I TTAA 3 cut(s) 75, 782, 840
TscAI CASTG 1 cut(s) 908
TseFI GTSAC 2 cut(s) 250, 362
TseI GCWGC 2 cut(s) 256, 1021
Tsp45I GTSAC 2 cut(s) 250, 362
TspDTI ATGAA 2 cut(s) 192, 689
TspGWI ACGGA 2 cut(s) 277, 645
TspRI CASTG 1 cut(s) 908
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 540
VspI ATTAAT 1 cut(s) 840
XapI RAATTY 1 cut(s) 640
XspI CTAG 2 cut(s) 386, 437
ZraI GACGTC 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.