Rroxscaffold_6G00430780

Protein FANTASTIC FOUR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014217
Physical Location & Seq
Forward (+)
50896319 .. 50897272
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00430780.1

Sequence Viewer

Length: 954 bp
ATGATGAGCTTCTGTAGAAAAATCACCCCTCACTCTCTTCTCGGCCTCACCGCCACCACCACAACCACCGCAACTCCTTCCACCACCAATGAAAACCTCCACCACTACATTCCTTCTCTGACGGGAGGACTATTAGGGTTAGTTACTGCAACCGCCAATGACGTCACGCAGCGTCATCATCTTGTTTTGGAATCTTCCTCCGTAAAGAAACAGAGCTCGTTGTCATCGCTCCCGTCGTTTTTACCGCCTCCTGCAACCAAGGCTGTAGGAGGAGGTGACATCGGCGGGTTCGGCTTCCTAGACGAAATCGGTGGCGGCGTGGACGGGTTTGTGTCATGCACCGAGAGTCTAGGGTTTGAGAGCTCGGATGAGATCATGCGAGTGGACGATCAGGTTGAGCAGGATGACGAGAAGGATGAGCTCAGGTTGATGAGGCAGTCTGAGAACAAGAGGACCAAATGGAGGAGGATGAGAGATAAGAGGTCGTCGGTGGATAAGGTCAACAATAAATTTCCGCCGCCGATCTCTTCCTTGAATAAGAACGGACACCCGAATTTCTATCTCCGGCCAGTGAGGAAAGACGGGAGGTTGGAACTCACCGAGGTGAAGATTCATAGGCCAGAGATTCTACGCGCTCATCGCGAAGATGGACGGTTGAGGTTGCATCTTATTAGCCATGACCAGGAAGAAGACTTAATAGAAGAAGAGCAGGAAGAAGAAATTGAAGAGGAAGGAGTTGATGTTGAAGATATTAATAATGTCGAGGAAGGGAAAGAGAATGTAGAAATAGAAAGTAGTTTGAATGTTGGGGATCAGTGGAAGATGGGGGTGGCTGGAGGAGAAGGGTTTAGGCGGTGTCAGGATGTGGCGGGGAGTAGCCACCATGTGCACCACCACCACCACCACCACCACAACACCCACCCTGTGTGGAGCCAGCAGCATTGTGTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

317

Amino Acids

35.59

Weight (kDa)

5.67

Isoelectric Point (pI)

70.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 170 - 223 4.7e-21 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54740
fragaria_vesca FvH4_6g05230
malus_domestica MD04G1210600.v1.1 MD12G1224900.v1.1
prunus_persica Prupe.6G331500_v2.0.a1
pyrus_communis pycom04g18650 pycom12g21030
rosa_chinensis RchiOBHm_Chr3g0453941
rosa_laevigata RLG00000025493
rosa_multiflora Rmu_sc0003556.1_g000030
rosa_roxburghii Rroxscaffold_6G00430780
rosa_rugosa Rorug02G0651900
rosa_samantha Rh3AG054500 Rh3BG056100 Rh3CG055300 Rh3DG056600
rosa_wichuraiana Rw3G004180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
AccII CGCG 2 cut(s) 633, 642
AclWI GGATC 1 cut(s) 819
AcoI YGGCCR 1 cut(s) 566
AcsI RAATTY 2 cut(s) 509, 553
AcyI GRCGYC 1 cut(s) 162
AdeI CACNNNGTG 2 cut(s) 886, 925
AfiI CCNNNNNNNGG 2 cut(s) 462, 682
AgsI TTSAA 4 cut(s) 535, 725, 746, 802
AjnI CCWGG 1 cut(s) 681
AleI CACNNNNGTG 1 cut(s) 602
AluBI AGCT 4 cut(s) 9, 216, 363, 421
AluI AGCT 4 cut(s) 9, 216, 363, 421
Alw21I GWGCWC 4 cut(s) 218, 365, 423, 891
Alw44I GTGCAC 1 cut(s) 887
AlwI GGATC 1 cut(s) 819
AoxI GGCC 3 cut(s) 43, 566, 617
ApaLI GTGCAC 1 cut(s) 887
ApeKI GCWGC 2 cut(s) 169, 937
ApoI RAATTY 2 cut(s) 509, 553
AseI ATTAAT 1 cut(s) 753
AspLEI GCGC 1 cut(s) 635
AspS9I GGNCC 1 cut(s) 453
AsuHPI GGTGA 5 cut(s) 16, 40, 287, 589, 616
AvaII GGWCC 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 891
BanII GRGCYC 3 cut(s) 218, 365, 423
BbsI GAAGAC 1 cut(s) 696
Bbv12I GWGCWC 4 cut(s) 218, 365, 423, 891
BbvI GCAGC 2 cut(s) 181, 949
BccI CCATC 2 cut(s) 641, 817
BciT130I CCWGG 1 cut(s) 683
BfaI CTAG 2 cut(s) 299, 350
BfmI CTRYAG 2 cut(s) 13, 264
BisI GCNGC 4 cut(s) 170, 316, 518, 938
BlsI GCNGC 4 cut(s) 171, 317, 519, 939
Bme1390I CCNGG 1 cut(s) 683
Bme18I GGWCC 1 cut(s) 453
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 932
BmrFI CCNGG 1 cut(s) 683
BmsI GCATC 1 cut(s) 673
BpiI GAAGAC 1 cut(s) 696
BpmI CTGGAG 1 cut(s) 855
Bpu10I CCTNAGC 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 258, 600
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 726, 756
Bsc4I CCNNNNNNNGG 2 cut(s) 462, 682
Bse1I ACTGG 1 cut(s) 569
BseBI CCWGG 1 cut(s) 683
BseDI CCNNGG 2 cut(s) 258, 600
BseGI GGATG 5 cut(s) 373, 409, 421, 474, 868
BseLI CCNNNNNNNGG 2 cut(s) 462, 682
BseMII CTCAG 2 cut(s) 432, 436
BseNI ACTGG 1 cut(s) 569
BseRI GAGGAG 3 cut(s) 285, 478, 852
BseSI GKGCMC 1 cut(s) 891
BseXI GCAGC 2 cut(s) 181, 949
Bsh1236I CGCG 2 cut(s) 633, 642
BshFI GGCC 3 cut(s) 45, 568, 619
BsiHKAI GWGCWC 4 cut(s) 218, 365, 423, 891
BsiSI CCGG 1 cut(s) 565
BslI CCNNNNNNNGG 2 cut(s) 462, 682
BsnI GGCC 3 cut(s) 45, 568, 619
Bsp1286I GDGCHC 4 cut(s) 218, 365, 423, 891
Bsp143I GATC 4 cut(s) 372, 388, 522, 811
Bsp68I TCGCGA 1 cut(s) 642
BspANI GGCC 3 cut(s) 45, 568, 619
BspCNI CTCAG 2 cut(s) 433, 435
BspFNI CGCG 2 cut(s) 633, 642
BspLI GGNNCC 1 cut(s) 932
BspPI GGATC 1 cut(s) 819
BspQI GCTCTTC 1 cut(s) 699
BsrI ACTGG 1 cut(s) 569
BssECI CCNNGG 2 cut(s) 258, 600
BssMI GATC 4 cut(s) 372, 388, 522, 811
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 683
Bst4CI ACNGT 1 cut(s) 654
Bst6I CTCTTC 4 cut(s) 42, 532, 699, 720
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 1 cut(s) 935
BstDEI CTNAG 2 cut(s) 422, 441
BstF5I GGATG 5 cut(s) 373, 409, 421, 474, 868
BstFNI CGCG 2 cut(s) 633, 642
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 4 cut(s) 375, 391, 525, 814
BstMBI GATC 4 cut(s) 372, 388, 522, 811
BstMWI GCNNNNNNNGC 3 cut(s) 260, 291, 639
BstNI CCWGG 1 cut(s) 683
BstSCI CCNGG 1 cut(s) 681
BstSFI CTRYAG 2 cut(s) 13, 264
BstSLI GKGCMC 1 cut(s) 891
BstUI CGCG 2 cut(s) 633, 642
BstV1I GCAGC 2 cut(s) 181, 949
BstV2I GAAGAC 1 cut(s) 696
BsuRI GGCC 3 cut(s) 45, 568, 619
BtgZI GCGATG 2 cut(s) 210, 623
BtsCI GGATG 5 cut(s) 373, 409, 421, 474, 868
BtsIMutI CAGTG 2 cut(s) 576, 821
BtuMI TCGCGA 1 cut(s) 642
Cac8I GCNNGC 1 cut(s) 935
CfoI GCGC 1 cut(s) 635
Cfr13I GGNCC 1 cut(s) 453
CseI GACGC 1 cut(s) 161
CviAII CATG 4 cut(s) 336, 376, 677, 884
DdeI CTNAG 2 cut(s) 422, 441
DpnI GATC 4 cut(s) 374, 390, 524, 813
DpnII GATC 4 cut(s) 372, 388, 522, 811
DraIII CACNNNGTG 2 cut(s) 886, 925
EaeI YGGCCR 1 cut(s) 566
Eam1104I CTCTTC 4 cut(s) 42, 532, 699, 720
EarI CTCTTC 4 cut(s) 42, 532, 699, 720
EciI GGCGGA 1 cut(s) 504
Ecl136II GAGCTC 3 cut(s) 216, 363, 421
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 3 cut(s) 218, 365, 423
Eco47I GGWCC 1 cut(s) 453
Eco53kI GAGCTC 3 cut(s) 216, 363, 421
EcoICRI GAGCTC 3 cut(s) 216, 363, 421
EcoRII CCWGG 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 3 cut(s) 218, 365, 423
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 4 cut(s) 339, 379, 680, 887
FaiI YATR 5 cut(s) 337, 377, 615, 678, 885
FatI CATG 4 cut(s) 335, 375, 676, 883
FauI CCCGC 2 cut(s) 278, 862
Fnu4HI GCNGC 4 cut(s) 170, 316, 518, 938
FokI GGATG 5 cut(s) 380, 416, 428, 481, 875
FriOI GRGCYC 3 cut(s) 218, 365, 423
Fsp4HI GCNGC 4 cut(s) 170, 316, 518, 938
FspBI CTAG 2 cut(s) 299, 350
GlaI GCGC 1 cut(s) 634
GluI GCNGC 4 cut(s) 170, 316, 518, 938
GsuI CTGGAG 1 cut(s) 855
HaeIII GGCC 3 cut(s) 45, 568, 619
HapII CCGG 1 cut(s) 565
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 635
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 4 cut(s) 339, 379, 680, 887
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 4 cut(s) 191, 346, 610, 625
HpaII CCGG 1 cut(s) 565
HphI GGTGA 5 cut(s) 16, 40, 287, 589, 616
Hpy166II GTNNAC 4 cut(s) 322, 385, 502, 889
Hpy188I TCNGA 3 cut(s) 120, 367, 442
Hpy188III TCNNGA 2 cut(s) 641, 860
Hpy8I GTNNAC 4 cut(s) 322, 385, 502, 889
Hpy99I CGWCG 2 cut(s) 238, 490
HpyAV CCTTC 6 cut(s) 87, 123, 406, 725, 761, 836
HpyCH4III ACNGT 1 cut(s) 654
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 5 cut(s) 149, 254, 339, 664, 889
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 291, 639
HpyF3I CTNAG 2 cut(s) 422, 441
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 4 cut(s) 339, 379, 680, 887
HspAI GCGC 1 cut(s) 633
Kzo9I GATC 4 cut(s) 372, 388, 522, 811
LguI GCTCTTC 1 cut(s) 699
LmnI GCTCC 2 cut(s) 234, 930
Lsp1109I GCAGC 2 cut(s) 181, 949
LweI GCATC 1 cut(s) 673
MaeI CTAG 2 cut(s) 299, 350
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 3 cut(s) 142, 163, 275
MalI GATC 4 cut(s) 374, 390, 524, 813
MboI GATC 4 cut(s) 372, 388, 522, 811
MhlI GDGCHC 4 cut(s) 218, 365, 423, 891
MluCI AATT 3 cut(s) 509, 553, 720
MlyI GAGTC 1 cut(s) 355
MmeI TCCRAC 1 cut(s) 570
MseI TTAA 2 cut(s) 695, 753
MslI CAYNNNNRTG 2 cut(s) 380, 602
MspI CCGG 1 cut(s) 565
MspR9I CCNGG 1 cut(s) 683
MvaI CCWGG 1 cut(s) 683
MvnI CGCG 2 cut(s) 633, 642
MwoI GCNNNNNNNGC 3 cut(s) 260, 291, 639
NdeII GATC 4 cut(s) 372, 388, 522, 811
NlaIII CATG 4 cut(s) 339, 379, 680, 887
NlaIV GGNNCC 1 cut(s) 932
NmeAIII GCCGAG 1 cut(s) 21
NmuCI GTSAC 2 cut(s) 163, 275
NruI TCGCGA 1 cut(s) 642
OliI CACNNNNGTG 1 cut(s) 602
PciSI GCTCTTC 1 cut(s) 699
PcsI WCGNNNNNNNCGW 2 cut(s) 233, 315
PfeI GAWTC 3 cut(s) 191, 610, 625
PkrI GCNGC 4 cut(s) 171, 317, 519, 939
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
PshBI ATTAAT 1 cut(s) 753
Psp124BI GAGCTC 3 cut(s) 218, 365, 423
Psp6I CCWGG 1 cut(s) 681
PspGI CCWGG 1 cut(s) 681
PspN4I GGNNCC 1 cut(s) 932
PspPI GGNCC 1 cut(s) 453
RruI TCGCGA 1 cut(s) 642
RseI CAYNNNNRTG 2 cut(s) 380, 602
SacI GAGCTC 3 cut(s) 218, 365, 423
SapI GCTCTTC 1 cut(s) 699
SaqAI TTAA 2 cut(s) 695, 753
SatI GCNGC 4 cut(s) 170, 316, 518, 938
Sau3AI GATC 4 cut(s) 372, 388, 522, 811
Sau96I GGNCC 1 cut(s) 453
SchI GAGTC 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 683
SduI GDGCHC 4 cut(s) 218, 365, 423, 891
SfaNI GCATC 1 cut(s) 673
SfcI CTRYAG 2 cut(s) 13, 264
SinI GGWCC 1 cut(s) 453
SmiMI CAYNNNNRTG 2 cut(s) 380, 602
Sse9I AATT 3 cut(s) 509, 553, 720
SspMI CTAG 2 cut(s) 299, 350
SstI GAGCTC 3 cut(s) 218, 365, 423
StyD4I CCNGG 1 cut(s) 681
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 654
TaiI ACGT 1 cut(s) 165
TaqI TCGA 1 cut(s) 762
TasI AATT 3 cut(s) 509, 553, 720
TauI GCSGC 2 cut(s) 318, 520
TfiI GAWTC 3 cut(s) 191, 610, 625
Tru1I TTAA 2 cut(s) 695, 753
Tru9I TTAA 2 cut(s) 695, 753
TscAI CASTG 2 cut(s) 576, 821
TseFI GTSAC 2 cut(s) 163, 275
TseI GCWGC 2 cut(s) 169, 937
Tsp45I GTSAC 2 cut(s) 163, 275
TspDTI ATGAA 2 cut(s) 105, 602
TspGWI ACGGA 2 cut(s) 190, 558
TspRI CASTG 2 cut(s) 576, 821
VneI GTGCAC 1 cut(s) 887
VpaK11BI GGWCC 1 cut(s) 453
VspI ATTAAT 1 cut(s) 753
XapI RAATTY 2 cut(s) 509, 553
XspI CTAG 2 cut(s) 299, 350
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.