Rh3AG054500

Protein FANTASTIC FOUR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0014217
Physical Location & Seq
Forward (+)
3858825 .. 3861432
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG054500.1

Sequence Viewer

Length: 1227 bp
ATGCTGGCACTCTCCTCCACCATAACCCACTCCTCTCTCTCCTCTACCTCTCTCTCTATCTCTCTCTCTCATTTTCTATCTCTATCTTTAGGCCTCAGACCACTCTCCTCCCTCCCTATTAATACCTCCTCTTCCTCCACTCCATCCTCTACATTTTTCATCCCCACAAAAACGTATCCAACATTTTTCATGACCCTTTTTGTTCTAATCGTTCCACTACTGACTTTTCTCTTCCTCTCTTCTGCGGCTTATTACAAGCTTCTTAATCTCCCAATCATGATGAGCTTCTGTAGAAAAATCACCCCTCACTCTCTTCTCGGCCTCACCGCCACCACCACAACCACCGCAACTCCTTCCACCACCAATGAAAACCTCCACCACTACATTCCTTCTCTGACGGGAGGACTATTAGGGTTAGTTACTACAACCGCCAATGACGTCACGCAGCGTCATCCTCTTGTTTTGGAATCTTCCTCCGTAAAGAAACAGAGCTCGTTGTCATCGCTCCCGTCGTTTTTACCGCCTCCTGCAACCAAGGCTGTAGGAGGCGGTGACATAGGCGGGTTCGGCTTCCTAGACGAAGTTGGTGGCGGCGTGGACGGGTTTGTGTCATGCACCGAGAGTCTAGGGTTTGAGAGCTCGGATGAGATCATGCGAGTGGACGATCAGGTTGAGCAGGATGACGAGAAGGATGAGCTCAGGTTAATGAGGCAGTCTGAGAACAAGAGGACCAAATGGAGGAGGATGAGAGATAAGAGGTCGTCGGTGGATAAGGTCAACAATAAGTTTCCGCCGCCGATCTCTTCCTTGAATAAGAACGGACACCCGAATTTCTATCTCCGGCCGGTGAGGAAAGACGGGAGGTTGGAACTCACAGAGGTGAAGATTCATAGGCCAGAGGTTCTACGCGCTCATCGCGAAGATGGACGGTTGAGGTTGCATCTTATTACCCATGACCAAGAAGAAGACTTAATAGAAGAAGAGCAAGAAGAAGAAATTGAAGAGGAAGGAGTTGATGTTGAAGATATTAATAATGTCGAGGAAGGGAAAGAGAATGTAGAAATAGAAAGTAGTGTGAATGTTGGGGATCAGTGGAAGATGGGGTTGGCTGGAGGAGAAGGGTTTAGGCGGTGTCAGGATGTGGCCGGGAGTAGCCACCATGTGCACCACCATCACCACCACCACAACACCCACCCTGTGTGGAGCCAGCAGCATTGTGTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAF

Protein Analysis

408

Amino Acids

45.39

Weight (kDa)

5.86

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF PF11250 262 - 315 9.3e-21 Fantastic Four meristem regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54740
fragaria_vesca FvH4_6g05230
malus_domestica MD04G1210600.v1.1 MD12G1224900.v1.1
prunus_persica Prupe.6G331500_v2.0.a1
pyrus_communis pycom04g18650 pycom12g21030
rosa_chinensis RchiOBHm_Chr3g0453941
rosa_laevigata RLG00000025493
rosa_multiflora Rmu_sc0003556.1_g000030
rosa_roxburghii Rroxscaffold_6G00430780
rosa_rugosa Rorug02G0651900
rosa_samantha Rh3AG054500 Rh3BG056100 Rh3CG055300 Rh3DG056600
rosa_wichuraiana Rw3G004180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 441
AccII CGCG 2 cut(s) 909, 918
AclWI GGATC 1 cut(s) 1095
AcoI YGGCCR 2 cut(s) 842, 1143
AcsI RAATTY 1 cut(s) 829
AcyI GRCGYC 1 cut(s) 438
AdeI CACNNNGTG 2 cut(s) 1162, 1198
AfiI CCNNNNNNNGG 1 cut(s) 738
AgsI TTSAA 3 cut(s) 811, 1001, 1022
AjuI GAANNNNNNNTTGG 2 cut(s) 1088, 1120
AleI CACNNNNGTG 1 cut(s) 878
AluBI AGCT 5 cut(s) 259, 285, 492, 639, 697
AluI AGCT 5 cut(s) 259, 285, 492, 639, 697
Alw21I GWGCWC 4 cut(s) 494, 641, 699, 1167
Alw44I GTGCAC 1 cut(s) 1163
AlwI GGATC 1 cut(s) 1095
AoxI GGCC 5 cut(s) 91, 319, 842, 893, 1143
ApaLI GTGCAC 1 cut(s) 1163
ApeKI GCWGC 2 cut(s) 445, 1210
ApoI RAATTY 1 cut(s) 829
AseI ATTAAT 2 cut(s) 120, 1029
AspLEI GCGC 1 cut(s) 911
AspS9I GGNCC 1 cut(s) 729
AsuC2I CCSGG 1 cut(s) 1147
AsuHPI GGTGA 6 cut(s) 292, 316, 563, 859, 892, 1166
AvaII GGWCC 1 cut(s) 729
BaeGI GKGCMC 1 cut(s) 1167
BanII GRGCYC 3 cut(s) 494, 641, 699
BbsI GAAGAC 1 cut(s) 972
Bbv12I GWGCWC 4 cut(s) 494, 641, 699, 1167
BbvI GCAGC 2 cut(s) 457, 1222
BccI CCATC 4 cut(s) 151, 917, 1093, 1179
BciVI GTATCC 1 cut(s) 186
BcnI CCSGG 1 cut(s) 1147
BfaI CTAG 2 cut(s) 575, 626
BfmI CTRYAG 2 cut(s) 289, 540
BfuI GTATCC 1 cut(s) 186
BisI GCNGC 5 cut(s) 246, 446, 592, 794, 1211
BlsI GCNGC 5 cut(s) 247, 447, 593, 795, 1212
Bme1390I CCNGG 1 cut(s) 1147
Bme18I GGWCC 1 cut(s) 729
BmgT120I GGNCC 1 cut(s) 729
BmiI GGNNCC 1 cut(s) 1205
BmrFI CCNGG 1 cut(s) 1147
BmsI GCATC 1 cut(s) 949
BpiI GAAGAC 1 cut(s) 972
BpmI CTGGAG 1 cut(s) 1131
Bpu10I CCTNAGC 1 cut(s) 698
BpuMI CCSGG 1 cut(s) 1147
BsaHI GRCGYC 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 534
BsaXI ACNNNNNCTCC 4 cut(s) 334, 364, 1002, 1032
Bsc4I CCNNNNNNNGG 1 cut(s) 738
Bse118I RCCGGY 1 cut(s) 844
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 8 cut(s) 143, 159, 451, 649, 685, 697, 750, 1144
BseLI CCNNNNNNNGG 1 cut(s) 738
BseMII CTCAG 3 cut(s) 109, 708, 712
BseRI GAGGAG 7 cut(s) 4, 22, 31, 97, 118, 754, 1128
BseSI GKGCMC 1 cut(s) 1167
BseX3I CGGCCG 1 cut(s) 842
BseXI GCAGC 2 cut(s) 457, 1222
Bsh1236I CGCG 2 cut(s) 909, 918
Bsh1285I CGRYCG 1 cut(s) 845
BshFI GGCC 5 cut(s) 93, 321, 844, 895, 1145
BsiEI CGRYCG 1 cut(s) 845
BsiHKAI GWGCWC 4 cut(s) 494, 641, 699, 1167
BsiSI CCGG 3 cut(s) 841, 845, 1146
BslI CCNNNNNNNGG 1 cut(s) 738
BsnI GGCC 5 cut(s) 93, 321, 844, 895, 1145
Bsp1286I GDGCHC 4 cut(s) 494, 641, 699, 1167
Bsp143I GATC 4 cut(s) 648, 664, 798, 1087
Bsp68I TCGCGA 1 cut(s) 918
BspANI GGCC 5 cut(s) 93, 321, 844, 895, 1145
BspCNI CTCAG 3 cut(s) 108, 709, 711
BspFNI CGCG 2 cut(s) 909, 918
BspHI TCATGA 2 cut(s) 189, 276
BspLI GGNNCC 1 cut(s) 1205
BspPI GGATC 1 cut(s) 1095
BspQI GCTCTTC 1 cut(s) 975
BsrFI RCCGGY 1 cut(s) 844
BssAI RCCGGY 1 cut(s) 844
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 4 cut(s) 648, 664, 798, 1087
BssNI GRCGYC 1 cut(s) 438
BssT1I CCWWGG 1 cut(s) 534
Bst4CI ACNGT 1 cut(s) 930
Bst6I CTCTTC 7 cut(s) 136, 236, 244, 318, 808, 975, 996
BstACI GRCGYC 1 cut(s) 438
BstC8I GCNNGC 2 cut(s) 6, 1208
BstDEI CTNAG 3 cut(s) 95, 698, 717
BstF5I GGATG 8 cut(s) 143, 159, 451, 649, 685, 697, 750, 1144
BstFNI CGCG 2 cut(s) 909, 918
BstHHI GCGC 1 cut(s) 911
BstKTI GATC 4 cut(s) 651, 667, 801, 1090
BstMBI GATC 4 cut(s) 648, 664, 798, 1087
BstMCI CGRYCG 1 cut(s) 845
BstMWI GCNNNNNNNGC 3 cut(s) 536, 567, 915
BstSCI CCNGG 1 cut(s) 1145
BstSFI CTRYAG 2 cut(s) 289, 540
BstSLI GKGCMC 1 cut(s) 1167
BstUI CGCG 2 cut(s) 909, 918
BstV1I GCAGC 2 cut(s) 457, 1222
BstV2I GAAGAC 1 cut(s) 972
BstZI CGGCCG 1 cut(s) 842
BsuI GTATCC 1 cut(s) 186
BsuRI GGCC 5 cut(s) 93, 321, 844, 895, 1145
BtgZI GCGATG 2 cut(s) 486, 899
BtsCI GGATG 8 cut(s) 143, 159, 451, 649, 685, 697, 750, 1144
BtsIMutI CAGTG 1 cut(s) 1097
BtuMI TCGCGA 1 cut(s) 918
Cac8I GCNNGC 2 cut(s) 6, 1208
CciI TCATGA 2 cut(s) 189, 276
CfoI GCGC 1 cut(s) 911
Cfr10I RCCGGY 1 cut(s) 844
Cfr13I GGNCC 1 cut(s) 729
CseI GACGC 1 cut(s) 437
CviAII CATG 6 cut(s) 190, 277, 612, 652, 953, 1160
DdeI CTNAG 3 cut(s) 95, 698, 717
DpnI GATC 4 cut(s) 650, 666, 800, 1089
DpnII GATC 4 cut(s) 648, 664, 798, 1087
DraIII CACNNNGTG 2 cut(s) 1162, 1198
EaeI YGGCCR 2 cut(s) 842, 1143
EagI CGGCCG 1 cut(s) 842
Eam1104I CTCTTC 7 cut(s) 136, 236, 244, 318, 808, 975, 996
EarI CTCTTC 7 cut(s) 136, 236, 244, 318, 808, 975, 996
EciI GGCGGA 1 cut(s) 780
Ecl136II GAGCTC 3 cut(s) 492, 639, 697
EclXI CGGCCG 1 cut(s) 842
Eco130I CCWWGG 1 cut(s) 534
Eco147I AGGCCT 1 cut(s) 93
Eco24I GRGCYC 3 cut(s) 494, 641, 699
Eco47I GGWCC 1 cut(s) 729
Eco52I CGGCCG 1 cut(s) 842
Eco53kI GAGCTC 3 cut(s) 492, 639, 697
EcoICRI GAGCTC 3 cut(s) 492, 639, 697
EcoT14I CCWWGG 1 cut(s) 534
EcoT38I GRGCYC 3 cut(s) 494, 641, 699
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 6 cut(s) 193, 280, 615, 655, 956, 1163
FaiI YATR 9 cut(s) 23, 191, 278, 557, 613, 653, 891, 954, 1161
FatI CATG 6 cut(s) 189, 276, 611, 651, 952, 1159
FauI CCCGC 1 cut(s) 554
Fnu4HI GCNGC 5 cut(s) 246, 446, 592, 794, 1211
FokI GGATG 8 cut(s) 130, 146, 438, 656, 692, 704, 757, 1151
FriOI GRGCYC 3 cut(s) 494, 641, 699
Fsp4HI GCNGC 5 cut(s) 246, 446, 592, 794, 1211
FspBI CTAG 2 cut(s) 575, 626
GlaI GCGC 1 cut(s) 910
GluI GCNGC 5 cut(s) 246, 446, 592, 794, 1211
GsuI CTGGAG 1 cut(s) 1131
HaeIII GGCC 5 cut(s) 93, 321, 844, 895, 1145
HapII CCGG 3 cut(s) 841, 845, 1146
HgaI GACGC 1 cut(s) 437
HhaI GCGC 1 cut(s) 911
Hin1I GRCGYC 1 cut(s) 438
Hin1II CATG 6 cut(s) 193, 280, 615, 655, 956, 1163
Hin6I GCGC 1 cut(s) 909
HinP1I GCGC 1 cut(s) 909
HincII GTYRAC 1 cut(s) 778
HindII GTYRAC 1 cut(s) 778
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 3 cut(s) 467, 622, 886
HpaII CCGG 3 cut(s) 841, 845, 1146
HphI GGTGA 6 cut(s) 292, 316, 563, 859, 892, 1166
Hpy166II GTNNAC 4 cut(s) 598, 661, 778, 1165
Hpy188I TCNGA 4 cut(s) 98, 396, 643, 718
Hpy188III TCNNGA 4 cut(s) 190, 277, 917, 1136
Hpy8I GTNNAC 4 cut(s) 598, 661, 778, 1165
Hpy99I CGWCG 2 cut(s) 514, 766
HpyAV CCTTC 6 cut(s) 363, 399, 682, 1001, 1037, 1112
HpyCH4III ACNGT 1 cut(s) 930
HpyCH4IV ACGT 2 cut(s) 173, 438
HpyCH4V TGCA 4 cut(s) 530, 615, 940, 1165
HpyF10VI GCNNNNNNNGC 3 cut(s) 536, 567, 915
HpyF3I CTNAG 3 cut(s) 95, 698, 717
HpySE526I ACGT 2 cut(s) 173, 438
Hsp92I GRCGYC 1 cut(s) 438
Hsp92II CATG 6 cut(s) 193, 280, 615, 655, 956, 1163
HspAI GCGC 1 cut(s) 909
Kzo9I GATC 4 cut(s) 648, 664, 798, 1087
LguI GCTCTTC 1 cut(s) 975
LmnI GCTCC 2 cut(s) 510, 1203
Lsp1109I GCAGC 2 cut(s) 457, 1222
LweI GCATC 1 cut(s) 949
MaeI CTAG 2 cut(s) 575, 626
MaeII ACGT 2 cut(s) 173, 438
MaeIII GTNAC 3 cut(s) 418, 439, 551
MalI GATC 4 cut(s) 650, 666, 800, 1089
MboI GATC 4 cut(s) 648, 664, 798, 1087
MhlI GDGCHC 4 cut(s) 494, 641, 699, 1167
MluCI AATT 2 cut(s) 829, 996
MlyI GAGTC 1 cut(s) 631
MmeI TCCRAC 2 cut(s) 203, 846
MseI TTAA 5 cut(s) 120, 264, 704, 971, 1029
MslI CAYNNNNRTG 2 cut(s) 656, 878
MspI CCGG 3 cut(s) 841, 845, 1146
MspR9I CCNGG 1 cut(s) 1147
MvnI CGCG 2 cut(s) 909, 918
MwoI GCNNNNNNNGC 3 cut(s) 536, 567, 915
NciI CCSGG 1 cut(s) 1147
NdeII GATC 4 cut(s) 648, 664, 798, 1087
NlaIII CATG 6 cut(s) 193, 280, 615, 655, 956, 1163
NlaIV GGNNCC 1 cut(s) 1205
NmeAIII GCCGAG 1 cut(s) 297
NmuCI GTSAC 2 cut(s) 439, 551
NruI TCGCGA 1 cut(s) 918
OliI CACNNNNGTG 1 cut(s) 878
PagI TCATGA 2 cut(s) 189, 276
PceI AGGCCT 1 cut(s) 93
PciSI GCTCTTC 1 cut(s) 975
PcsI WCGNNNNNNNCGW 1 cut(s) 509
PfeI GAWTC 2 cut(s) 467, 886
PkrI GCNGC 5 cut(s) 247, 447, 593, 795, 1212
PleI GAGTC 1 cut(s) 630
PpsI GAGTC 1 cut(s) 630
PshBI ATTAAT 2 cut(s) 120, 1029
Psp124BI GAGCTC 3 cut(s) 494, 641, 699
PspN4I GGNNCC 1 cut(s) 1205
PspPI GGNCC 1 cut(s) 729
RruI TCGCGA 1 cut(s) 918
RseI CAYNNNNRTG 2 cut(s) 656, 878
SacI GAGCTC 3 cut(s) 494, 641, 699
SapI GCTCTTC 1 cut(s) 975
SaqAI TTAA 5 cut(s) 120, 264, 704, 971, 1029
SatI GCNGC 5 cut(s) 246, 446, 592, 794, 1211
Sau3AI GATC 4 cut(s) 648, 664, 798, 1087
Sau96I GGNCC 1 cut(s) 729
SchI GAGTC 1 cut(s) 631
ScrFI CCNGG 1 cut(s) 1147
SduI GDGCHC 4 cut(s) 494, 641, 699, 1167
SfaNI GCATC 1 cut(s) 949
SfcI CTRYAG 2 cut(s) 289, 540
SinI GGWCC 1 cut(s) 729
SmiMI CAYNNNNRTG 2 cut(s) 656, 878
Sse9I AATT 2 cut(s) 829, 996
SseBI AGGCCT 1 cut(s) 93
SspMI CTAG 2 cut(s) 575, 626
SstI GAGCTC 3 cut(s) 494, 641, 699
StuI AGGCCT 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 1145
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 1 cut(s) 930
TaiI ACGT 2 cut(s) 176, 441
TaqI TCGA 1 cut(s) 1038
TasI AATT 2 cut(s) 829, 996
TauI GCSGC 3 cut(s) 248, 594, 796
TfiI GAWTC 2 cut(s) 467, 886
Tru1I TTAA 5 cut(s) 120, 264, 704, 971, 1029
Tru9I TTAA 5 cut(s) 120, 264, 704, 971, 1029
TscAI CASTG 1 cut(s) 1097
TseFI GTSAC 2 cut(s) 439, 551
TseI GCWGC 2 cut(s) 445, 1210
Tsp45I GTSAC 2 cut(s) 439, 551
TspDTI ATGAA 4 cut(s) 148, 178, 381, 878
TspGWI ACGGA 2 cut(s) 466, 834
TspRI CASTG 1 cut(s) 1097
VneI GTGCAC 1 cut(s) 1163
VpaK11BI GGWCC 1 cut(s) 729
VspI ATTAAT 2 cut(s) 120, 1029
XapI RAATTY 1 cut(s) 829
XspI CTAG 2 cut(s) 575, 626
ZraI GACGTC 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.