AT1G55820

Protein of unknown function (DUF1296)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007082
Physical Location & Seq
Forward (+)
20864339 .. 20867761
3423 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55820.1

Sequence Viewer

Length: 1728 bp
ATGAGCTCCTCCGATGGCGGCTCCTCTAGGGTTTCGATTCCTTACCATCTCCGCAAAACCCTTCAGAAAATCAGAGAGTATACCGGAAAGCAGCACTCGGATGAGGATATCTTTGCCGTCTATAAGGATTCCTTCAATGATCCTCATGAGACCGCTCAGAAGCTCCTCTTCTTAGATACATTTCATGAGGTGAGAAGTAAAAGGGAGAAAAAGAAGGAGCCTATAGTGCCAGTTACACAACCAAGTGGCAGAGGTGGTCGGAGGAACTTTGCTTCAAGTAACTCTTATCAAGGTAGTGGAAGAAATGCTTCTTTTAAAAGGGAAAATGGAGCTAATCATGTAACAAGAGGTTCTAGAACTGCTCAGCCTGCCACTAACAAAGCAAGCAACATCACAGTACCTAATGAAACAAAGGTTTCTGGTCCTGCTAGTATTCCGAGTGAGGTCAGCAATCATAAAGCTCAAGATGATCCTTCTTTGATTTCTGCTTCACGTTGCAGTAGCAAGTCAGATCAAGCCATTGAAATTGAGACTGCGTCCAAACAAGGCAAAAATCAATCGCTTCCTAAGCCAGATGTTAGCGAACAGTCACACGTAACATTCCCTTTCCACCTTCAGGTTGCCAAAGGACTGCAAAATGGTCTGACGTTTGGCAGTTTTGATTCCAATTTTGTGAAAGAGGTATCTTCTAGCAATGGTGCTAGTGGGGGATATGACTCAAATTTTGAGTCTTCTCACGGGACAGGGGATGATGAGAGGGAATCTTCTCCCACTACCAATGGTATTACTGGGGTTGCTTCGGCTAGAGAAGAAACATCAACAGTTTCTGAAGATAAGGATTATGGGATATCAAATTCTGCAACTGGAGCTGAGCCTGTGGTGCACTCGGATCACATTGTCCCACCTGTAGAAGAAGTACCGAAGGAGGAAGCTTTATCAAACACAGAAACTCATCAAATTGCTTATGGTCAAGAAGCTCCACTCAGTGTGTTTGGTCTTGTCCCCTCGTTGTCAGCAATAGGCCAACCCGTTAACACAGAAGCAGCGGAGACTCAGCCCGGAAATTCCAACTCTCCACCTATTTCATTAGTATCATATCCTCCAGATCAGAGCTCCATAGCAGCAGCCACTCAACAGACAAATTTTCTTAGGCAGCAATACCCTCCCAATTTCTTCCCTTACGGCTATTACTCACCGTATTATATGCCACCGCCGTACATTCACCAGTTCTTGAGCCCAAACGGGATCCCTCAGCAGTCTTATTTTCCACAAGGAGCTGCTCTAACAGCACCTTCTCATGCAAAACCAGTTGACAACACTGAAAACCCTCCCACCACAAACCCTTACCTACACACTTCTCCCATGGTTGCTAGCAGCATCCCATCTACAACCACCTTAAATTCTATCCATAGTGAAGAAAAGGCATCTCACCTGACTGAAAGTGCAGCTGCATGGATTGGGCAGGGATTTGGCAACCTGCAGGTGAATCCAATGTATAACCTAGCATACCAAGGTCAGCCACTTGGTTTTCCAGTCGTGCAGGCTGGTCATGGTGGCCTCATGGGAATGCACCAACCAACACAGCCCATGGCAGCTGCTTCAACTACATATCAGACCTTACCACCACCGCCACACACAACAACGGCTATGGGTGAACCCATAGGACACCCGCACATTGCTTATCAGCAACCTCAAGCTGCTCTAACGAATTGGGTTAACAACTATTAG

Protein Analysis

575

Amino Acids

61.88

Weight (kDa)

5.92

Isoelectric Point (pI)

54.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GIP1_N PF06972 13 - 73 1e-26 GBF-interacting protein 1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1471
Acc36I ACCTGC 2 cut(s) 1471, 1485
AccBSI CCGCTC 1 cut(s) 155
AccI GTMKAC 1 cut(s) 80
AciI CCGC 7 cut(s) 18, 52, 153, 1046, 1211, 1628, 1670
AclWI GGATC 5 cut(s) 134, 464, 897, 1240, 1253
AcsI RAATTY 5 cut(s) 721, 853, 1063, 1141, 1399
AcuI CTGAAG 3 cut(s) 47, 599, 849
AdeI CACNNNGTG 1 cut(s) 986
AfaI GTAC 3 cut(s) 399, 918, 1217
AfiI CCNNNNNNNGG 1 cut(s) 616
AflIII ACRYGT 1 cut(s) 592
AgsI TTSAA 4 cut(s) 136, 276, 524, 1602
Alw21I GWGCWC 3 cut(s) 8, 885, 1115
Alw26I GTCTC 3 cut(s) 143, 524, 1043
Alw44I GTGCAC 1 cut(s) 881
AlwI GGATC 5 cut(s) 134, 464, 897, 1240, 1253
AlwNI CAGNNNCTG 1 cut(s) 827
AoxI GGCC 2 cut(s) 1021, 1555
ApaLI GTGCAC 1 cut(s) 881
ApoI RAATTY 5 cut(s) 721, 853, 1063, 1141, 1399
ArsI GACNNNNNNTTYG 4 cut(s) 707, 713, 739, 745
Asp700I GAANNNNTTC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 422
AsuC2I CCSGG 1 cut(s) 1059
AsuHPI GGTGA 6 cut(s) 202, 1185, 1214, 1421, 1495, 1664
AsuNHI GCTAGC 1 cut(s) 1370
AvaII GGWCC 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 885
BamHI GGATCC 1 cut(s) 1245
BanII GRGCYC 3 cut(s) 8, 1115, 1238
BbsI GAAGAC 1 cut(s) 723
Bbv12I GWGCWC 3 cut(s) 8, 885, 1115
BbvCI CCTCAGC 1 cut(s) 1251
BccI CCATC 3 cut(s) 8, 54, 1390
BceAI ACGGC 4 cut(s) 101, 1198, 1198, 1659
BcnI CCSGG 1 cut(s) 1059
BcoDI GTCTC 3 cut(s) 143, 524, 1043
BfaI CTAG 8 cut(s) 27, 354, 429, 690, 702, 804, 1371, 1502
BfmI CTRYAG 3 cut(s) 222, 906, 1478
BfuAI ACCTGC 2 cut(s) 1471, 1485
BlpI GCTNAGC 2 cut(s) 363, 870
Bme1390I CCNGG 1 cut(s) 1059
Bme18I GGWCC 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 3 cut(s) 22, 219, 1247
BmrFI CCNGG 1 cut(s) 1059
BmrI ACTGGG 1 cut(s) 798
BmsI GCATC 2 cut(s) 1386, 1433
BmtI GCTAGC 1 cut(s) 1374
BmuI ACTGGG 1 cut(s) 798
BpiI GAAGAC 1 cut(s) 723
BpmI CTGGAG 2 cut(s) 885, 1086
Bpu10I CCTNAGC 2 cut(s) 567, 1251
Bpu1102I GCTNAGC 2 cut(s) 363, 870
BpuEI CTTGAG 3 cut(s) 447, 1252, 1677
BpuMI CCSGG 1 cut(s) 1059
BsaAI YACGTR 1 cut(s) 595
BsaI GGTCTC 1 cut(s) 143
BsaJI CCNNGG 3 cut(s) 1362, 1510, 1587
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 6 cut(s) 230, 793, 868, 1225, 1307, 1532
Bse3DI GCAATG 2 cut(s) 700, 1674
BseDI CCNNGG 3 cut(s) 1362, 1510, 1587
BseGI GGATG 3 cut(s) 106, 754, 1377
BseLI CCNNNNNNNGG 1 cut(s) 616
BseMI GCAATG 2 cut(s) 700, 1674
BseMII CTCAG 6 cut(s) 170, 377, 861, 997, 1067, 1265
BseNI ACTGG 6 cut(s) 230, 793, 868, 1225, 1307, 1532
BseRI GAGGAG 2 cut(s) 13, 155
BseSI GKGCMC 1 cut(s) 885
BsgI GTGCAG 2 cut(s) 1464, 1559
BshFI GGCC 2 cut(s) 1023, 1557
BsiHKAI GWGCWC 3 cut(s) 8, 885, 1115
BsiSI CCGG 2 cut(s) 84, 1059
BslFI GGGAC 3 cut(s) 754, 884, 986
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 3 cut(s) 143, 524, 1043
BsmFI GGGAC 3 cut(s) 754, 884, 986
BsmI GAATGC 1 cut(s) 1572
BsnI GGCC 2 cut(s) 1023, 1557
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 4 cut(s) 8, 885, 1115, 1238
Bsp143I GATC 6 cut(s) 139, 469, 511, 889, 1105, 1245
Bsp1720I GCTNAGC 2 cut(s) 363, 870
Bsp19I CCATGG 2 cut(s) 1362, 1587
BspACI CCGC 7 cut(s) 18, 52, 153, 1046, 1211, 1628, 1670
BspANI GGCC 2 cut(s) 1023, 1557
BspCNI CTCAG 6 cut(s) 169, 376, 862, 996, 1066, 1264
BspHI TCATGA 2 cut(s) 145, 184
BspLI GGNNCC 3 cut(s) 22, 219, 1247
BspMAI CTGCAG 1 cut(s) 1482
BspMI ACCTGC 2 cut(s) 1471, 1485
BspOI GCTAGC 1 cut(s) 1374
BspPI GGATC 5 cut(s) 134, 464, 897, 1240, 1253
BspTNI GGTCTC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 700, 1674
BsrI ACTGG 6 cut(s) 230, 793, 868, 1225, 1307, 1532
BssECI CCNNGG 3 cut(s) 1362, 1510, 1587
BssMI GATC 6 cut(s) 139, 469, 511, 889, 1105, 1245
BssNAI GTATAC 1 cut(s) 81
BssT1I CCWWGG 3 cut(s) 1362, 1510, 1587
Bst1107I GTATAC 1 cut(s) 81
Bst4CI ACNGT 4 cut(s) 397, 588, 823, 1197
Bst6I CTCTTC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 595
BstC8I GCNNGC 4 cut(s) 369, 385, 1372, 1542
BstDEI CTNAG 9 cut(s) 156, 172, 363, 567, 870, 983, 1053, 1148, 1251
BstDSI CCRYGG 2 cut(s) 1362, 1587
BstF5I GGATG 3 cut(s) 106, 754, 1377
BstKTI GATC 6 cut(s) 142, 472, 514, 892, 1108, 1248
BstMAI GTCTC 3 cut(s) 143, 524, 1043
BstMBI GATC 6 cut(s) 139, 469, 511, 889, 1105, 1245
BstMWI GCNNNNNNNGC 6 cut(s) 226, 368, 568, 866, 880, 1286
BstSCI CCNGG 1 cut(s) 1057
BstSFI CTRYAG 3 cut(s) 222, 906, 1478
BstSLI GKGCMC 1 cut(s) 885
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 1 cut(s) 1245
BstYI RGATCY 1 cut(s) 1245
BstZ17I GTATAC 1 cut(s) 81
BsuRI GGCC 2 cut(s) 1023, 1557
BtgI CCRYGG 2 cut(s) 1362, 1587
BtsCI GGATG 3 cut(s) 106, 754, 1377
BtsIMutI CAGTG 2 cut(s) 991, 1317
BveI ACCTGC 2 cut(s) 1471, 1485
Cac8I GCNNGC 4 cut(s) 369, 385, 1372, 1542
CaiI CAGNNNCTG 1 cut(s) 827
CciI TCATGA 2 cut(s) 145, 184
Cfr13I GGNCC 1 cut(s) 422
CseI GACGC 1 cut(s) 525
Csp6I GTAC 3 cut(s) 398, 917, 1216
CviAII CATG 9 cut(s) 146, 185, 338, 1298, 1363, 1452, 1550, 1561, 1588
CviQI GTAC 3 cut(s) 398, 917, 1216
DdeI CTNAG 9 cut(s) 156, 172, 363, 567, 870, 983, 1053, 1148, 1251
DpnI GATC 6 cut(s) 141, 471, 513, 891, 1107, 1247
DpnII GATC 6 cut(s) 139, 469, 511, 889, 1105, 1245
DraI TTTAAA 1 cut(s) 316
DraIII CACNNNGTG 1 cut(s) 986
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Ecl136II GAGCTC 2 cut(s) 6, 1113
Eco130I CCWWGG 3 cut(s) 1362, 1510, 1587
Eco24I GRGCYC 3 cut(s) 8, 1115, 1238
Eco31I GGTCTC 1 cut(s) 143
Eco32I GATATC 2 cut(s) 109, 849
Eco47I GGWCC 1 cut(s) 422
Eco53kI GAGCTC 2 cut(s) 6, 1113
Eco57I CTGAAG 3 cut(s) 47, 599, 849
EcoICRI GAGCTC 2 cut(s) 6, 1113
EcoRV GATATC 2 cut(s) 109, 849
EcoT14I CCWWGG 3 cut(s) 1362, 1510, 1587
EcoT38I GRGCYC 3 cut(s) 8, 1115, 1238
ErhI CCWWGG 3 cut(s) 1362, 1510, 1587
FaeI CATG 9 cut(s) 149, 188, 341, 1301, 1366, 1455, 1553, 1564, 1591
FalI AAGNNNNNCTT 8 cut(s) 116, 148, 152, 184, 268, 300, 292, 324
FaqI GGGAC 3 cut(s) 754, 884, 986
FatI CATG 9 cut(s) 145, 184, 337, 1297, 1362, 1451, 1549, 1560, 1587
FauI CCCGC 1 cut(s) 1677
FblI GTMKAC 1 cut(s) 80
FokI GGATG 3 cut(s) 113, 761, 1364
FriOI GRGCYC 3 cut(s) 8, 1115, 1238
FspBI CTAG 8 cut(s) 27, 354, 429, 690, 702, 804, 1371, 1502
GsuI CTGGAG 2 cut(s) 885, 1086
HaeIII GGCC 2 cut(s) 1023, 1557
HapII CCGG 2 cut(s) 84, 1059
HgaI GACGC 1 cut(s) 525
Hin1II CATG 9 cut(s) 149, 188, 341, 1301, 1366, 1455, 1553, 1564, 1591
HincII GTYRAC 3 cut(s) 1033, 1312, 1717
HindII GTYRAC 3 cut(s) 1033, 1312, 1717
HindIII AAGCTT 1 cut(s) 930
HinfI GANTC 8 cut(s) 37, 128, 662, 716, 728, 761, 1051, 1486
HpaI GTTAAC 2 cut(s) 1033, 1717
HpaII CCGG 2 cut(s) 84, 1059
HphI GGTGA 6 cut(s) 202, 1185, 1214, 1421, 1495, 1664
Hpy166II GTNNAC 6 cut(s) 81, 883, 1033, 1312, 1655, 1717
Hpy188III TCNNGA 7 cut(s) 146, 185, 354, 464, 971, 1103, 1231
Hpy8I GTNNAC 6 cut(s) 81, 883, 1033, 1312, 1655, 1717
HpyAV CCTTC 7 cut(s) 71, 142, 208, 483, 623, 916, 1302
HpyCH4III ACNGT 4 cut(s) 397, 588, 823, 1197
HpyCH4IV ACGT 3 cut(s) 493, 594, 647
HpyF10VI GCNNNNNNNGC 6 cut(s) 226, 368, 568, 866, 880, 1286
HpyF3I CTNAG 9 cut(s) 156, 172, 363, 567, 870, 983, 1053, 1148, 1251
HpySE526I ACGT 3 cut(s) 493, 594, 647
Hsp92II CATG 9 cut(s) 149, 188, 341, 1301, 1366, 1455, 1553, 1564, 1591
KspAI GTTAAC 2 cut(s) 1033, 1717
Kzo9I GATC 6 cut(s) 139, 469, 511, 889, 1105, 1245
LmnI GCTCC 9 cut(s) 11, 26, 168, 217, 329, 866, 982, 1118, 1274
LweI GCATC 2 cut(s) 1386, 1433
MaeI CTAG 8 cut(s) 27, 354, 429, 690, 702, 804, 1371, 1502
MaeII ACGT 3 cut(s) 493, 594, 647
MaeIII GTNAC 5 cut(s) 232, 278, 340, 588, 595
MalI GATC 6 cut(s) 141, 471, 513, 891, 1107, 1247
MbiI CCGCTC 1 cut(s) 155
MboI GATC 6 cut(s) 139, 469, 511, 889, 1105, 1245
MflI RGATCY 1 cut(s) 1245
MhlI GDGCHC 4 cut(s) 8, 885, 1115, 1238
MlyI GAGTC 3 cut(s) 710, 737, 1045
MmeI TCCRAC 2 cut(s) 239, 1092
MroXI GAANNNNTTC 1 cut(s) 307
MseI TTAA 4 cut(s) 315, 1032, 1397, 1716
MslI CAYNNNNRTG 2 cut(s) 99, 1565
MspA1I CMGCKG 3 cut(s) 1046, 1448, 1595
MspI CCGG 2 cut(s) 84, 1059
MspR9I CCNGG 1 cut(s) 1059
Mva1269I GAATGC 1 cut(s) 1572
MwoI GCNNNNNNNGC 6 cut(s) 226, 368, 568, 866, 880, 1286
NciI CCSGG 1 cut(s) 1059
NcoI CCATGG 2 cut(s) 1362, 1587
NdeII GATC 6 cut(s) 139, 469, 511, 889, 1105, 1245
NheI GCTAGC 1 cut(s) 1370
NlaIII CATG 9 cut(s) 149, 188, 341, 1301, 1366, 1455, 1553, 1564, 1591
NlaIV GGNNCC 3 cut(s) 22, 219, 1247
NmuCI GTSAC 1 cut(s) 588
PagI TCATGA 2 cut(s) 145, 184
PaqCI CACCTGC 1 cut(s) 1471
PctI GAATGC 1 cut(s) 1572
PdmI GAANNNNTTC 1 cut(s) 307
PfeI GAWTC 5 cut(s) 37, 128, 662, 761, 1486
PflFI GACNNNGTC 1 cut(s) 535
PleI GAGTC 3 cut(s) 710, 736, 1045
PpsI GAGTC 3 cut(s) 710, 736, 1045
Ppu21I YACGTR 1 cut(s) 595
Psp124BI GAGCTC 2 cut(s) 8, 1115
PspN4I GGNNCC 3 cut(s) 22, 219, 1247
PspPI GGNCC 1 cut(s) 422
PstI CTGCAG 1 cut(s) 1482
PstNI CAGNNNCTG 1 cut(s) 827
PsuI RGATCY 1 cut(s) 1245
PsyI GACNNNGTC 1 cut(s) 535
PvuII CAGCTG 2 cut(s) 1448, 1595
RsaI GTAC 3 cut(s) 399, 918, 1217
RsaNI GTAC 3 cut(s) 398, 917, 1216
RseI CAYNNNNRTG 2 cut(s) 99, 1565
SacI GAGCTC 2 cut(s) 8, 1115
SaqAI TTAA 4 cut(s) 315, 1032, 1397, 1716
Sau3AI GATC 6 cut(s) 139, 469, 511, 889, 1105, 1245
Sau96I GGNCC 1 cut(s) 422
SbfI CCTGCAGG 1 cut(s) 1482
SchI GAGTC 3 cut(s) 710, 737, 1045
ScrFI CCNGG 1 cut(s) 1059
SdaI CCTGCAGG 1 cut(s) 1482
SduI GDGCHC 4 cut(s) 8, 885, 1115, 1238
SfaNI GCATC 2 cut(s) 1386, 1433
SfcI CTRYAG 3 cut(s) 222, 906, 1478
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 2 cut(s) 99, 1565
SmlI CTYRAG 3 cut(s) 462, 1231, 1692
SmoI CTYRAG 3 cut(s) 462, 1231, 1692
Sse8387I CCTGCAGG 1 cut(s) 1482
SsiI CCGC 7 cut(s) 18, 52, 153, 1046, 1211, 1628, 1670
SspMI CTAG 8 cut(s) 27, 354, 429, 690, 702, 804, 1371, 1502
SstI GAGCTC 2 cut(s) 8, 1115
StyD4I CCNGG 1 cut(s) 1057
StyI CCWWGG 3 cut(s) 1362, 1510, 1587
TaaI ACNGT 4 cut(s) 397, 588, 823, 1197
TaiI ACGT 3 cut(s) 496, 597, 650
TaqI TCGA 1 cut(s) 35
TauI GCSGC 1 cut(s) 21
TfiI GAWTC 5 cut(s) 37, 128, 662, 761, 1486
Tru1I TTAA 4 cut(s) 315, 1032, 1397, 1716
Tru9I TTAA 4 cut(s) 315, 1032, 1397, 1716
TscAI CASTG 2 cut(s) 991, 1324
TseFI GTSAC 1 cut(s) 588
Tsp45I GTSAC 1 cut(s) 588
TspDTI ATGAA 3 cut(s) 173, 420, 1074
TspRI CASTG 2 cut(s) 991, 1324
Tth111I GACNNNGTC 1 cut(s) 535
VneI GTGCAC 1 cut(s) 881
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 5 cut(s) 721, 853, 1063, 1141, 1399
XbaI TCTAGA 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 307
XspI CTAG 8 cut(s) 27, 354, 429, 690, 702, 804, 1371, 1502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.