Rorug02G0449200

Protein of unknown function (DUF1296)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007082
Physical Location & Seq
Reverse (-)
57626587 .. 57628782
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0449200.1

Sequence Viewer

Length: 1110 bp
ATGGCAAACACCAGTTTCCATAACTTTATCTTTGGTTTCTGTACAAGCCTTCTCATCATCACAACCCTTAGCCACAGCGAGCGTGGGTCGTCGAAGAAGGAACATGCACCTATTTTCATCTTCGGGGATTCAATATTTGATGCTGGAAACAATAACTACATCAACACTAGTTTGCGGGCAAATTTTCGGCCATATGGTGATGTCTTTTTTAAATATCCAACGGGAAGATTTTCGAATGGTCGTTTAATTTCAGATTTTATAGCTGAGTATGCAAAACTACCTATTATTCCACCATATCTACAACCCGGCAACCATCAATTTACATATGGTGCAAACTTTGCATCTGCAGGAGCTGGTGCTCTAGTTGAAACTAGCCAAGGTTTGGTGATAGACCTTACTTCCCAGCTTTCATATTTTGAGCAAGTTCGTAAGTCATTGAGGAAGAATTTAGGGGATGAAGAAGCTAAGACTCTGATATCAAGAGCTATTTACTTGTTTAGTGTCGGAGGCAACGATTATTCATACATATTTGGTACAAACTCCAGCATCCTTCGAACCTACTCTCATAGGGAATTTGTAGGAACAGTTCTAGGCAACATAACTGCAGCAATCGAAGAAATATACAAGAAAGGAGGAAGAAATTTTGGGTTTCTTAGCCTTGATCCTCTTGGTTGTTTACCGTTCGCAAGAGCAGTTGAGCAGGAACAAAAAGGTCATGGATGCTTTGAAGAAATTACACCGTATGTAAAACTCCACAACAAAGCACTTCCAAAACTCCTTCAGAAGCTGGAGACTAAACTCAAGGGATTCAGATACTCACTTTCTGACTATAATGAGTTTCTGAGAGATAGGATGAATCACCCTTCTAAATATGGTTTTGAGGAGGGGAAGGTGGCATGTTGTGGAAGTGGTGCATATAGAGGAATTTTAAGCTGCGGAGGCGAGAGAGGTATCAAAGAGTATTATTTGTGCCCTAATGCAAGTAAATATGTCTTCTTTGACTCTGCCCATCCAACAGAAAGGGTCAATCAGCAATTTGCTAGGCTATTCTGGAGTGGAACTCCCAATTCCACTGCTCCTTACAATCTCAAAGCACTATTCGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1296

Protein Analysis

369

Amino Acids

41.35

Weight (kDa)

8.88

Isoelectric Point (pI)

29.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 38 - 349 9.5e-31 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 382
AciI CCGC 2 cut(s) 175, 936
AclWI GGATC 1 cut(s) 656
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 5 cut(s) 181, 445, 572, 640, 924
AcuI CTGAAG 1 cut(s) 764
AfaI GTAC 2 cut(s) 43, 535
AfiI CCNNNNNNNGG 1 cut(s) 382
AgsI TTSAA 3 cut(s) 132, 368, 728
AhlI ACTAGT 1 cut(s) 167
AluBI AGCT 7 cut(s) 263, 353, 406, 464, 485, 787, 933
AluI AGCT 7 cut(s) 263, 353, 406, 464, 485, 787, 933
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 1 cut(s) 785
AlwI GGATC 1 cut(s) 656
AlwNI CAGNNNCTG 2 cut(s) 353, 787
AoxI GGCC 1 cut(s) 188
ApeKI GCWGC 2 cut(s) 605, 933
ApoI RAATTY 5 cut(s) 181, 445, 572, 640, 924
Asp700I GAANNNNTTC 1 cut(s) 229
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 3 cut(s) 209, 397, 851
AsuII TTCGAA 3 cut(s) 233, 553, 1101
BaeGI GKGCMC 1 cut(s) 974
BbsI GAAGAC 1 cut(s) 985
Bbv12I GWGCWC 1 cut(s) 361
BbvI GCAGC 2 cut(s) 617, 920
BccI CCATC 2 cut(s) 321, 1017
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 785
BcuI ACTAGT 1 cut(s) 167
BfaI CTAG 5 cut(s) 168, 362, 372, 590, 1041
BfmI CTRYAG 2 cut(s) 345, 603
BisI GCNGC 2 cut(s) 606, 934
BlsI GCNGC 2 cut(s) 607, 935
Bme1390I CCNGG 1 cut(s) 306
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 4 cut(s) 130, 350, 555, 710
BpiI GAAGAC 1 cut(s) 985
BplI GAGNNNNNCTC 2 cut(s) 1045, 1077
BpmI CTGGAG 3 cut(s) 526, 809, 1072
Bpu10I CCTNAGC 1 cut(s) 68
Bpu14I TTCGAA 3 cut(s) 233, 553, 1101
BpuEI CTTGAG 1 cut(s) 785
BpuMI CCSGG 1 cut(s) 306
BsaJI CCNNGG 1 cut(s) 376
Bsc4I CCNNNNNNNGG 1 cut(s) 382
Bse1I ACTGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 5 cut(s) 460, 546, 725, 858, 1009
BseLI CCNNNNNNNGG 1 cut(s) 382
BseMII CTCAG 2 cut(s) 255, 833
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 896
BseSI GKGCMC 1 cut(s) 974
BseXI GCAGC 2 cut(s) 617, 920
BseYI CCCAGC 1 cut(s) 402
BshFI GGCC 1 cut(s) 190
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 382
BsmAI GTCTC 1 cut(s) 785
BsnI GGCC 1 cut(s) 190
Bsp119I TTCGAA 3 cut(s) 233, 553, 1101
Bsp1286I GDGCHC 2 cut(s) 361, 974
Bsp1407I TGTACA 1 cut(s) 41
Bsp143I GATC 1 cut(s) 661
BspACI CCGC 2 cut(s) 175, 936
BspANI GGCC 1 cut(s) 190
BspCNI CTCAG 2 cut(s) 256, 834
BspMAI CTGCAG 2 cut(s) 349, 607
BspPI GGATC 1 cut(s) 656
BspT104I TTCGAA 3 cut(s) 233, 553, 1101
BsrGI TGTACA 1 cut(s) 41
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 1 cut(s) 661
BssT1I CCWWGG 1 cut(s) 376
Bst4CI ACNGT 3 cut(s) 586, 681, 741
BstAPI GCANNNNNTGC 1 cut(s) 338
BstAUI TGTACA 1 cut(s) 41
BstBI TTCGAA 3 cut(s) 233, 553, 1101
BstC8I GCNNGC 2 cut(s) 80, 177
BstDEI CTNAG 5 cut(s) 68, 264, 465, 653, 842
BstF5I GGATG 5 cut(s) 460, 546, 725, 858, 1009
BstKTI GATC 1 cut(s) 664
BstMAI GTCTC 1 cut(s) 785
BstMBI GATC 1 cut(s) 661
BstMWI GCNNNNNNNGC 3 cut(s) 269, 338, 939
BstNSI RCATGY 2 cut(s) 107, 900
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 2 cut(s) 345, 603
BstSLI GKGCMC 1 cut(s) 974
BstV1I GCAGC 2 cut(s) 617, 920
BstV2I GAAGAC 1 cut(s) 985
BsuRI GGCC 1 cut(s) 190
BtsCI GGATG 5 cut(s) 460, 546, 725, 858, 1009
BtsI GCAGTG 1 cut(s) 1071
BtsIMutI CAGTG 1 cut(s) 1071
Cac8I GCNNGC 2 cut(s) 80, 177
CaiI CAGNNNCTG 2 cut(s) 353, 787
Csp6I GTAC 2 cut(s) 42, 534
CviAII CATG 3 cut(s) 104, 716, 897
CviQI GTAC 2 cut(s) 42, 534
DdeI CTNAG 5 cut(s) 68, 264, 465, 653, 842
DpnI GATC 1 cut(s) 663
DpnII GATC 1 cut(s) 661
DraI TTTAAA 1 cut(s) 211
EaeI YGGCCR 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 376
Eco32I GATATC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 764
EcoRV GATATC 1 cut(s) 477
EcoT14I CCWWGG 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 3 cut(s) 107, 719, 900
FatI CATG 3 cut(s) 103, 715, 896
FauI CCCGC 1 cut(s) 168
FauNDI CATATG 2 cut(s) 193, 325
Fnu4HI GCNGC 2 cut(s) 606, 934
FokI GGATG 5 cut(s) 467, 533, 732, 865, 996
Fsp4HI GCNGC 2 cut(s) 606, 934
FspBI CTAG 5 cut(s) 168, 362, 372, 590, 1041
GluI GCNGC 2 cut(s) 606, 934
GsaI CCCAGC 1 cut(s) 406
GsuI CTGGAG 3 cut(s) 526, 809, 1072
HaeIII GGCC 1 cut(s) 190
HapII CCGG 1 cut(s) 306
Hin1II CATG 3 cut(s) 107, 719, 900
HinfI GANTC 5 cut(s) 128, 469, 807, 856, 1001
HpaII CCGG 1 cut(s) 306
HphI GGTGA 3 cut(s) 209, 397, 851
Hpy166II GTNNAC 1 cut(s) 677
Hpy188I TCNGA 7 cut(s) 253, 474, 506, 783, 812, 826, 843
Hpy188III TCNNGA 2 cut(s) 480, 1051
Hpy8I GTNNAC 1 cut(s) 677
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 6 cut(s) 59, 91, 560, 788, 873, 883
HpyCH4III ACNGT 3 cut(s) 586, 681, 741
HpyCH4V TGCA 8 cut(s) 107, 272, 332, 341, 347, 605, 914, 980
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 338, 939
HpyF3I CTNAG 5 cut(s) 68, 264, 465, 653, 842
Hsp92II CATG 3 cut(s) 107, 719, 900
Kzo9I GATC 1 cut(s) 661
LmnI GCTCC 2 cut(s) 350, 1081
Lsp1109I GCAGC 2 cut(s) 617, 920
LweI GCATC 4 cut(s) 130, 350, 555, 710
MaeI CTAG 5 cut(s) 168, 362, 372, 590, 1041
MalI GATC 1 cut(s) 663
MboI GATC 1 cut(s) 661
MboII GAAGA 9 cut(s) 106, 112, 237, 454, 470, 626, 648, 740, 985
MhlI GDGCHC 2 cut(s) 361, 974
MlyI GAGTC 2 cut(s) 463, 995
MmeI TCCRAC 3 cut(s) 242, 484, 1037
MnlI CCTC 9 cut(s) 432, 500, 626, 675, 874, 877, 914, 932, 941
MroXI GAANNNNTTC 1 cut(s) 229
MseI TTAA 3 cut(s) 210, 245, 929
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 306
MwoI GCNNNNNNNGC 3 cut(s) 269, 338, 939
NciI CCSGG 1 cut(s) 306
NdeI CATATG 2 cut(s) 193, 325
NdeII GATC 1 cut(s) 661
NlaIII CATG 3 cut(s) 107, 719, 900
NspI RCATGY 2 cut(s) 107, 900
NspV TTCGAA 3 cut(s) 233, 553, 1101
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 3 cut(s) 128, 807, 856
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 2 cut(s) 607, 935
PleI GAGTC 2 cut(s) 463, 995
PpsI GAGTC 2 cut(s) 463, 995
PspFI CCCAGC 1 cut(s) 402
PsrI GAACNNNNNNTAC 2 cut(s) 570, 602
PstI CTGCAG 2 cut(s) 349, 607
PstNI CAGNNNCTG 2 cut(s) 353, 787
RsaI GTAC 2 cut(s) 43, 535
RsaNI GTAC 2 cut(s) 42, 534
SaqAI TTAA 3 cut(s) 210, 245, 929
SatI GCNGC 2 cut(s) 606, 934
Sau3AI GATC 1 cut(s) 661
SchI GAGTC 2 cut(s) 463, 995
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 2 cut(s) 361, 974
SfaNI GCATC 4 cut(s) 130, 350, 555, 710
SfcI CTRYAG 2 cut(s) 345, 603
SfuI TTCGAA 3 cut(s) 233, 553, 1101
SmlI CTYRAG 1 cut(s) 800
SmoI CTYRAG 1 cut(s) 800
SpeI ACTAGT 1 cut(s) 167
SsiI CCGC 2 cut(s) 175, 936
SspI AATATT 1 cut(s) 135
SspMI CTAG 5 cut(s) 168, 362, 372, 590, 1041
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 3 cut(s) 586, 681, 741
TaqI TCGA 5 cut(s) 92, 233, 553, 612, 1101
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 3 cut(s) 128, 807, 856
Tru1I TTAA 3 cut(s) 210, 245, 929
Tru9I TTAA 3 cut(s) 210, 245, 929
TscAI CASTG 1 cut(s) 1078
TseI GCWGC 2 cut(s) 605, 933
TspDTI ATGAA 5 cut(s) 106, 399, 471, 510, 869
TspRI CASTG 1 cut(s) 1078
Van91I CCANNNNNTGG 1 cut(s) 382
XapI RAATTY 5 cut(s) 181, 445, 572, 640, 924
XceI RCATGY 2 cut(s) 107, 900
XcmI CCANNNNNNNNNTGG 1 cut(s) 80
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 5 cut(s) 168, 362, 372, 590, 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.