Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007082

Physical Location & Seq

Genomic Coordinates Forward (+)

20481970 .. 20486074

Gene Structure 4105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G193000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGGTGAAAAACAGATATGGATAGGACACTACTCTAGCTCTCATAAGATATTGTTGGTTGGAGAGGGAGACTTCTCATTTTCTGCTTGTTTGGCTCGAGCTTTTCGCTCTGCCACTAACATGGTTGCAACCACTCTTGAATCGGAAGATACTCTATTGAAGGAACATTGGAGCAGTGAGGCACATGTGGATGAGTTGCAGAGAAGAGGATGCAAAGTGTTGCATGAAGTTGATGTATATGACATGGACCAGCATCCCACCCTTATGTTCAAGAAATTTGATATGATCGTCTTCAACTTTCCTCATGCAGGCCATGACTATTGGCTATGCGAAAGAGACAATGAGCTCATACGAAGGCACAGGGGTTTGCTAGAAGCATTTTTCCGAAGTGCCAGTGGGATGCTGGGCGAAGGTGGGGAAATTCATGTTTCACACAGAGAAGGCTACCCTTATGATAAATGGAAGTTGAAGGAGCTTGCTAAGAAAGCCGGCCTGGTTTTGAAAGAGAAAGTGTGGTTCGAAAAGTCGGACTACCCTGGGTACCACCAGAAGAGAGGTGGAGGCATCGAGAGCAACAAAACATTTCCTCTCAAAGAATGTTACACCTTCAAGTTTTCACTGAAACATGAAACAAGTGTCCTTGATTCAGAAGAAGCAACTTCAAAATTGCAGAGGAAGCTAGAGGAATTACACCTTCCCCAGCACAAAACATTTATTCCTCCAAATCACATCCATGTTCCTGAATCTGAAAGATTCAAGTTGACTTTTGGAAGTTTTGGGGCTGCTGACTTTGTCAGTGGTCCTGAGACTGATAAGAGCTCGCATATTATGAGTGGATGTGGGTTCAGGGTTTCAATCTCAAACAGAGTGAGGAAGGCGATCCAGGACAGCAAGGAGATAACGGGAAATCATAGTGAGGAGGAAATCTATGCAATGCTCAAGAGATGTTACATGGATCCCAACGAGACAGCCCAGAAGCTTCTCTATCAAGATCCATTTCATGAGGTCAAAGGGAAACGTGACAAGAGAAAAGAGAAACTGAACAACATAGAGTCTGCAGAGTCGCCGTGGAGATCTGGAATGCAGGGACGGGAAGATGCTGGTGATGGTGGAAATTCCGCTCCTCGATTTGCTCCCTCTCTTCCAATCTCTCGTAAGACAAAAAATAAACAGCGAAGTCTGGTAACAAGCTCTGGACCGATCATTGTGGATGGTCCAACCAATGTGGCTGATGGATGGTCGCCTGTTGTGCTTCCCTCCCATTTATCTGGATGGGATTTATGCACATCAGCTGATGGATGGTCTGATGTGCATCCCTCCCATTTATCTGATGGATGGTCTGATGTGCATGCCCCCCCTTTAGCTACTGGATGGGAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

461

Amino Acids

52.07

Weight (kDa)

6.57

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55820 AT3G13222
fragaria_vesca	FvH4_6g40450 FvH4_6g40450 FvH4_6g40450 FvH4_6g40450 FvH4_6g40450
prunus_persica	Prupe.3G193000_v2.0.a1 Prupe.3G193000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0155681
rosa_laevigata	RLG00000020854
rosa_multiflora	Rmu_co8254459.1_g000001 Rmu_co8366137.1_g000001 Rmu_sc0014073.1_g000001 Rmu_sc0042011.1_g000001 Rmu_ssc0000223.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093560
rosa_rugosa	Rorug02G0449100 Rorug02G0449200 Rorug02G0449300
rosa_samantha	Rh2AG515200 Rh2BG526300 Rh2CG500100 Rh2DG535100
rosa_wichuraiana	Rw2G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1381
Acc65I	GGTACC	1 cut(s)	540
AccB1I	GGYRCC	1 cut(s)	540
AccBSI	CCGCTC	1 cut(s)	1121
AciI	CCGC	1 cut(s)	1119
AclWI	GGATC	4 cut(s)	874, 950, 963, 986
AcsI	RAATTY	3 cut(s)	275, 420, 1114
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	184
AjnI	CCWGG	3 cut(s)	492, 535, 882
Alw21I	GWGCWC	2 cut(s)	348, 821
Alw26I	GTCTC	4 cut(s)	63, 330, 800, 959
AlwI	GGATC	4 cut(s)	874, 950, 963, 986
Ama87I	CYCGRG	1 cut(s)	96
AoxI	GGCC	2 cut(s)	310, 490
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	3 cut(s)	275, 420, 1114
Asp718I	GGTACC	1 cut(s)	540
AspS9I	GGNCC	4 cut(s)	247, 800, 1196, 1214
AsuHPI	GGTGA	2 cut(s)	17, 1115
AsuII	TTCGAA	1 cut(s)	519
AvaI	CYCGRG	1 cut(s)	96
AvaII	GGWCC	4 cut(s)	247, 800, 1196, 1214
BamHI	GGATCC	1 cut(s)	955
BanI	GGYRCC	1 cut(s)	540
BanII	GRGCYC	2 cut(s)	348, 821
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	2 cut(s)	348, 821
BbvI	GCAGC	1 cut(s)	769
BceAI	ACGGC	1 cut(s)	1051
BciT130I	CCWGG	3 cut(s)	494, 537, 884
BcoDI	GTCTC	4 cut(s)	63, 330, 800, 959
BfaI	CTAG	3 cut(s)	36, 371, 680
BfmI	CTRYAG	1 cut(s)	1056
BglII	AGATCT	1 cut(s)	1073
BisI	GCNGC	1 cut(s)	783
BlsI	GCNGC	1 cut(s)	784
Bme1390I	CCNGG	3 cut(s)	494, 537, 884
Bme18I	GGWCC	4 cut(s)	247, 800, 1196, 1214
BmeT110I	CYCGRG	1 cut(s)	96
BmgT120I	GGNCC	4 cut(s)	247, 800, 1196, 1214
BmiI	GGNNCC	2 cut(s)	542, 957
BmrFI	CCNGG	3 cut(s)	494, 537, 884
BmsI	GCATC	6 cut(s)	200, 262, 390, 573, 1087, 1321
BpiI	GAAGAC	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	519
BpuEI	CTTGAG	1 cut(s)	923
BsaBI	GATNNNNATC	1 cut(s)	1311
BsaJI	CCNNGG	3 cut(s)	535, 536, 1067
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	2 cut(s)	393, 1372
Bse3DI	GCAATG	1 cut(s)	939
Bse8I	GATNNNNATC	1 cut(s)	1311
BseBI	CCWGG	3 cut(s)	494, 537, 884
BseDI	CCNNGG	3 cut(s)	535, 536, 1067
BseJI	GATNNNNATC	1 cut(s)	1311
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMI	GCAATG	1 cut(s)	939
BseMII	CTCAG	1 cut(s)	795
BseNI	ACTGG	2 cut(s)	393, 1372
BseRI	GAGGAG	2 cut(s)	932, 1113
BseXI	GCAGC	1 cut(s)	769
BseYI	CCCAGC	2 cut(s)	403, 699
BshFI	GGCC	2 cut(s)	312, 492
BshNI	GGYRCC	1 cut(s)	540
BsiHKAI	GWGCWC	2 cut(s)	348, 821
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	489
BslFI	GGGAC	1 cut(s)	1101
BslI	CCNNNNNNNGG	1 cut(s)	308
BsmAI	GTCTC	4 cut(s)	63, 330, 800, 959
BsmFI	GGGAC	1 cut(s)	1101
BsmI	GAATGC	1 cut(s)	1086
BsnI	GGCC	2 cut(s)	312, 492
BsoBI	CYCGRG	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	519
Bsp1286I	GDGCHC	2 cut(s)	348, 821
Bsp143I	GATC	6 cut(s)	285, 879, 955, 991, 1073, 1200
BspACI	CCGC	1 cut(s)	1119
BspANI	GGCC	2 cut(s)	312, 492
BspCNI	CTCAG	1 cut(s)	796
BspHI	TCATGA	1 cut(s)	1000
BspLI	GGNNCC	2 cut(s)	542, 957
BspMAI	CTGCAG	1 cut(s)	1060
BspPI	GGATC	4 cut(s)	874, 950, 963, 986
BspT104I	TTCGAA	1 cut(s)	519
BspT107I	GGYRCC	1 cut(s)	540
BsrBI	CCGCTC	1 cut(s)	1121
BsrDI	GCAATG	1 cut(s)	939
BsrFI	RCCGGY	1 cut(s)	488
BsrI	ACTGG	2 cut(s)	393, 1372
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	3 cut(s)	535, 536, 1067
BssMI	GATC	6 cut(s)	285, 879, 955, 991, 1073, 1200
Bst2UI	CCWGG	3 cut(s)	494, 537, 884
Bst6I	CTCTTC	3 cut(s)	199, 545, 1146
BstBI	TTCGAA	1 cut(s)	519
BstC8I	GCNNGC	5 cut(s)	310, 477, 490, 821, 1350
BstDEI	CTNAG	2 cut(s)	480, 804
BstDSI	CCRYGG	1 cut(s)	1067
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstKTI	GATC	6 cut(s)	288, 882, 958, 994, 1076, 1203
BstMAI	GTCTC	4 cut(s)	63, 330, 800, 959
BstMBI	GATC	6 cut(s)	285, 879, 955, 991, 1073, 1200
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 485, 570, 676, 1249
BstNI	CCWGG	3 cut(s)	494, 537, 884
BstNSI	RCATGY	2 cut(s)	188, 1352
BstSCI	CCNGG	3 cut(s)	492, 535, 882
BstSFI	CTRYAG	1 cut(s)	1056
BstV1I	GCAGC	1 cut(s)	769
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	3 cut(s)	955, 991, 1073
BstXI	CCANNNNNNTGG	2 cut(s)	121, 1268
BstYI	RGATCY	3 cut(s)	955, 991, 1073
BsuRI	GGCC	2 cut(s)	312, 492
BtgI	CCRYGG	1 cut(s)	1067
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	4 cut(s)	181, 400, 617, 802
Cac8I	GCNNGC	5 cut(s)	310, 477, 490, 821, 1350
CciI	TCATGA	1 cut(s)	1000
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	4 cut(s)	247, 800, 1196, 1214
Csp6I	GTAC	1 cut(s)	541
CspCI	CAANNNNNGTGG	2 cut(s)	1206, 1241
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	2 cut(s)	480, 804
DpnI	GATC	6 cut(s)	287, 881, 957, 993, 1075, 1202
DpnII	GATC	6 cut(s)	285, 879, 955, 991, 1073, 1200
Eam1104I	CTCTTC	3 cut(s)	199, 545, 1146
EarI	CTCTTC	3 cut(s)	199, 545, 1146
Ecl136II	GAGCTC	2 cut(s)	346, 819
Eco24I	GRGCYC	2 cut(s)	348, 821
Eco47I	GGWCC	4 cut(s)	247, 800, 1196, 1214
Eco53kI	GAGCTC	2 cut(s)	346, 819
Eco88I	CYCGRG	1 cut(s)	96
EcoICRI	GAGCTC	2 cut(s)	346, 819
EcoNI	CCTNNNNNAGG	1 cut(s)	306
EcoRII	CCWGG	3 cut(s)	492, 535, 882
EcoT38I	GRGCYC	2 cut(s)	348, 821
FaqI	GGGAC	1 cut(s)	1101
Fnu4HI	GCNGC	1 cut(s)	783
FriOI	GRGCYC	2 cut(s)	348, 821
Fsp4HI	GCNGC	1 cut(s)	783
FspBI	CTAG	3 cut(s)	36, 371, 680
GluI	GCNGC	1 cut(s)	783
GsaI	CCCAGC	2 cut(s)	407, 703
HaeIII	GGCC	2 cut(s)	312, 492
HapII	CCGG	1 cut(s)	489
HincII	GTYRAC	1 cut(s)	762
HindII	GTYRAC	1 cut(s)	762
HindIII	AAGCTT	1 cut(s)	977
HinfI	GANTC	6 cut(s)	140, 644, 743, 753, 1052, 1061
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	2 cut(s)	17, 1115
Hpy166II	GTNNAC	1 cut(s)	762
Hpy188I	TCNGA	8 cut(s)	145, 386, 529, 649, 748, 1306, 1330, 1342
Hpy8I	GTNNAC	1 cut(s)	762
HpyAV	CCTTC	8 cut(s)	154, 348, 404, 434, 463, 616, 704, 868
HpyCH4IV	ACGT	1 cut(s)	1018
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 485, 570, 676, 1249
HpyF3I	CTNAG	2 cut(s)	480, 804
HpySE526I	ACGT	1 cut(s)	1018
KpnI	GGTACC	1 cut(s)	544
KroI	GCCGGC	1 cut(s)	488
KroNI	GCCGGC	1 cut(s)	490
Kzo9I	GATC	6 cut(s)	285, 879, 955, 991, 1073, 1200
LmnI	GCTCC	4 cut(s)	171, 472, 1126, 1138
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	6 cut(s)	200, 262, 390, 573, 1087, 1321
MaeI	CTAG	3 cut(s)	36, 371, 680
MaeII	ACGT	1 cut(s)	1018
MaeIII	GTNAC	4 cut(s)	599, 947, 1019, 1183
MalI	GATC	6 cut(s)	287, 881, 957, 993, 1075, 1202
MbiI	CCGCTC	1 cut(s)	1121
MboI	GATC	6 cut(s)	285, 879, 955, 991, 1073, 1200
MboII	GAAGA	7 cut(s)	158, 216, 283, 562, 662, 1106, 1133
MflI	RGATCY	3 cut(s)	955, 991, 1073
MhlI	GDGCHC	2 cut(s)	348, 821
MluCI	AATT	6 cut(s)	275, 420, 665, 686, 1114, 1376
MlyI	GAGTC	2 cut(s)	1061, 1070
MmeI	TCCRAC	3 cut(s)	40, 507, 1241
MroNI	GCCGGC	1 cut(s)	488
MslI	CAYNNNNRTG	4 cut(s)	119, 189, 263, 732
MspA1I	CMGCKG	1 cut(s)	1292
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	3 cut(s)	494, 537, 884
Mva1269I	GAATGC	1 cut(s)	1086
MvaI	CCWGG	3 cut(s)	494, 537, 884
MwoI	GCNNNNNNNGC	5 cut(s)	92, 485, 570, 676, 1249
NaeI	GCCGGC	1 cut(s)	490
NdeII	GATC	6 cut(s)	285, 879, 955, 991, 1073, 1200
NgoMIV	GCCGGC	1 cut(s)	488
NlaIV	GGNNCC	2 cut(s)	542, 957
NmuCI	GTSAC	1 cut(s)	1019
NspI	RCATGY	2 cut(s)	188, 1352
NspV	TTCGAA	1 cut(s)	519
PaeI	GCATGC	1 cut(s)	1352
PaeR7I	CTCGAG	1 cut(s)	96
PagI	TCATGA	1 cut(s)	1000
PasI	CCCWGGG	1 cut(s)	536
PciI	ACATGT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	1086
PdiI	GCCGGC	1 cut(s)	490
PfeI	GAWTC	4 cut(s)	140, 644, 743, 753
PflFI	GACNNNGTC	1 cut(s)	791
PfoI	TCCNGGA	1 cut(s)	882
PkrI	GCNGC	1 cut(s)	784
PleI	GAGTC	2 cut(s)	1060, 1069
PpsI	GAGTC	2 cut(s)	1060, 1069
PscI	ACATGT	1 cut(s)	184
PsiI	TTATAA	1 cut(s)	1381
Psp124BI	GAGCTC	2 cut(s)	348, 821
Psp6I	CCWGG	3 cut(s)	492, 535, 882
PspFI	CCCAGC	2 cut(s)	403, 699
PspGI	CCWGG	3 cut(s)	492, 535, 882
PspN4I	GGNNCC	2 cut(s)	542, 957
PspPI	GGNCC	4 cut(s)	247, 800, 1196, 1214
PspXI	VCTCGAGB	1 cut(s)	96
PstI	CTGCAG	1 cut(s)	1060
PsuI	RGATCY	3 cut(s)	955, 991, 1073
PsyI	GACNNNGTC	1 cut(s)	791
PvuII	CAGCTG	1 cut(s)	1292
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	4 cut(s)	119, 189, 263, 732
SacI	GAGCTC	2 cut(s)	348, 821
SatI	GCNGC	1 cut(s)	783
Sau3AI	GATC	6 cut(s)	285, 879, 955, 991, 1073, 1200
Sau96I	GGNCC	4 cut(s)	247, 800, 1196, 1214
SchI	GAGTC	2 cut(s)	1061, 1070
ScrFI	CCNGG	3 cut(s)	494, 537, 884
SduI	GDGCHC	2 cut(s)	348, 821
SfaNI	GCATC	6 cut(s)	200, 262, 390, 573, 1087, 1321
SfcI	CTRYAG	1 cut(s)	1056
Sfr274I	CTCGAG	1 cut(s)	96
SfuI	TTCGAA	1 cut(s)	519
SinI	GGWCC	4 cut(s)	247, 800, 1196, 1214
SlaI	CTCGAG	1 cut(s)	96
SmiMI	CAYNNNNRTG	4 cut(s)	119, 189, 263, 732
SmlI	CTYRAG	2 cut(s)	96, 938
SmoI	CTYRAG	2 cut(s)	96, 938
SphI	GCATGC	1 cut(s)	1352
Sse9I	AATT	6 cut(s)	275, 420, 665, 686, 1114, 1376
SsiI	CCGC	1 cut(s)	1119
SspMI	CTAG	3 cut(s)	36, 371, 680
SstI	GAGCTC	2 cut(s)	348, 821
StyD4I	CCNGG	3 cut(s)	492, 535, 882
TaiI	ACGT	1 cut(s)	1021
TaqI	TCGA	4 cut(s)	97, 519, 567, 1126
TaqII	GACCGA	1 cut(s)	1213
TasI	AATT	6 cut(s)	275, 420, 665, 686, 1114, 1376
TfiI	GAWTC	4 cut(s)	140, 644, 743, 753
TscAI	CASTG	4 cut(s)	181, 400, 624, 802
TseFI	GTSAC	1 cut(s)	1019
TseI	GCWGC	1 cut(s)	782
Tsp45I	GTSAC	1 cut(s)	1019
TspDTI	ATGAA	4 cut(s)	240, 413, 642, 989
TspRI	CASTG	4 cut(s)	181, 400, 624, 802
Tth111I	GACNNNGTC	1 cut(s)	791
VpaK11BI	GGWCC	4 cut(s)	247, 800, 1196, 1214
XagI	CCTNNNNNAGG	1 cut(s)	306
XapI	RAATTY	3 cut(s)	275, 420, 1114
XceI	RCATGY	2 cut(s)	188, 1352
XcmI	CCANNNNNNNNNTGG	3 cut(s)	400, 554, 1328
XhoI	CTCGAG	1 cut(s)	96
XspI	CTAG	3 cut(s)	36, 371, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.