Rmu_ssc0000223.1_g000001

Protein of unknown function (DUF1296)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000223.1
Physical Location & Seq
Forward (+)
1 .. 3900
3900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000223.1_g000001.1.cds

Sequence Viewer

Length: 1544 bp
atccatttcatgaggtcaaaaggaaacgtgacaagagaaaagagaatctgaacaacagagagtctgcagagccacggtggaggcctggaatgccgggtagggggggtaggggtggtcgggtgaatttttcatctcgtccaccacatgatgccggtggtggcaggaactcaggtcctggaactgagaatggacccgctcaggttgcagagaaaggtgttgctccctctttgccaaccactcgtgagacaaaaactaaagagagaagtctggtaacaagctctgtacctgtgattgtgggtggtccttccaatgtggcttcgggaactactactgttgtgcctgcctcacagttatctactggaactagtgctgaaataagtttgtcattggttggggataaatcgggtagctcggtctctgcagtggatgcaaaaaaaatccccaccagtgcattcggaaatgaggacttgcacgagcaggctgcaccaagctccagtagtagctcagttttgccaaacccagcgtctacattgggagcatgcttttccccctctgatcctgtactggtgccgtctaatgattcacggctcccaggttctgtgggcacaatcaaacgtgaagttgtgagccatcatcctcctgcagcttctgaggttggcagctctttagcacaaggaaaaacaacaagcaaaacacagggagttgggaaaactcagccctctgatttttcacatccttcatctacatcaactcatggcggttcggttagtcggccatcatctaattatagtagccggtcgcaacaactaattggcactcaaaaagttggtaccaacaaggagtggaaaccaaagcccatagtttctgctgttgttcaaggtcaagcaacagctaatgtagctgcacctgaggtgcctgctgatttggtagaggtctctccgcagtcacaacctgtttcaagtgtccttgattcggaagaagcaacttcaaaactgcagaagaagctagaggaattacaccttccacagcttccacagcgcaaattagttattcttccaaatcacatacacgttcctgagtctgaacgaaacaagttgagttttggaagctttggggcaacttttggtgtaacgaatagctatgtcagtggtcctgagagtgagaagagctctacccctcggtctgaaacttctcaggttattgaagaatctgtggaggaacagtcctcaagcaatcaaaatgtgttggcaactgctgatgagggtgattttcctgatcattcgcaatcacctactcatatgcttgaaaatctatcatctgttgagggtgatgtctcatccagtgcagcccaaggacataatgaatctaagcatgacactgtattgacttctggaggtcatcagctcccagtggctaatacttctccgaattatagttttggtattgtacctccaattttagggagtcagcttgcggcatttgaaaactctgaatctcaagcacgtgatatatctcggcttccaagctttgtagtaagctcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

513

Amino Acids

53.53

Weight (kDa)

6.47

Isoelectric Point (pI)

61.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 829
AccB1I GGYRCC 3 cut(s) 567, 829, 912
AccBSI CCGCTC 1 cut(s) 196
AccI GTMKAC 1 cut(s) 526
AciI CCGC 4 cut(s) 194, 758, 940, 1474
AclWI GGATC 1 cut(s) 550
AcoI YGGCCR 1 cut(s) 772
AcsI RAATTY 1 cut(s) 123
AcvI CACGTG 1 cut(s) 1504
AfaI GTAC 4 cut(s) 284, 563, 831, 1448
AfiI CCNNNNNNNGG 3 cut(s) 100, 972, 1459
AflIII ACRYGT 1 cut(s) 1068
AgsI TTSAA 6 cut(s) 877, 959, 989, 1204, 1306, 1483
AhlI ACTAGT 1 cut(s) 364
AjnI CCWGG 3 cut(s) 84, 174, 591
Alw21I GWGCWC 1 cut(s) 1171
Alw26I GTCTC 4 cut(s) 238, 420, 939, 1338
AlwI GGATC 1 cut(s) 550
AlwNI CAGNNNCTG 3 cut(s) 175, 598, 649
AoxI GGCC 2 cut(s) 82, 772
ApeKI GCWGC 5 cut(s) 481, 643, 659, 901, 1345
ApoI RAATTY 1 cut(s) 123
ArsI GACNNNNNNTTYG 2 cut(s) 508, 540
Asp718I GGTACC 1 cut(s) 829
AspLEI GCGC 1 cut(s) 1040
AspS9I GGNCC 4 cut(s) 172, 190, 301, 1150
AsuC2I CCSGG 1 cut(s) 95
AsuHPI GGTGA 4 cut(s) 132, 1276, 1280, 1339
AvaII GGWCC 4 cut(s) 172, 190, 301, 1150
AxyI CCTNAGG 1 cut(s) 908
BaeGI GKGCMC 1 cut(s) 607
BanI GGYRCC 3 cut(s) 567, 829, 912
BanII GRGCYC 1 cut(s) 1171
BauI CACGAG 2 cut(s) 239, 472
BbrPI CACGTG 1 cut(s) 1504
Bbv12I GWGCWC 1 cut(s) 1171
BbvI GCAGC 5 cut(s) 468, 655, 671, 888, 1357
BccI CCATC 2 cut(s) 638, 783
BceAI ACGGC 2 cut(s) 555, 601
BcgI CGANNNNNNTGC 2 cut(s) 463, 497
BciT130I CCWGG 3 cut(s) 86, 176, 593
BclI TGATCA 1 cut(s) 1275
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 4 cut(s) 238, 420, 939, 1338
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 2 cut(s) 365, 1006
BfmI CTRYAG 4 cut(s) 65, 419, 641, 994
BisI GCNGC 6 cut(s) 482, 644, 660, 902, 1346, 1475
BlsI GCNGC 6 cut(s) 483, 645, 661, 903, 1347, 1476
Bme1390I CCNGG 4 cut(s) 86, 95, 176, 593
Bme18I GGWCC 4 cut(s) 172, 190, 301, 1150
BmgT120I GGNCC 4 cut(s) 172, 190, 301, 1150
BmiI GGNNCC 5 cut(s) 192, 569, 589, 831, 914
BmrFI CCNGG 4 cut(s) 86, 95, 176, 593
BmrI ACTGGG 1 cut(s) 1402
BmsI GCATC 2 cut(s) 138, 417
BmuI ACTGGG 1 cut(s) 1402
BplI GAGNNNNNCTC 2 cut(s) 1153, 1185
BpmI CTGGAG 2 cut(s) 477, 1412
Bpu10I CCTNAGC 1 cut(s) 197
BpuEI CTTGAG 2 cut(s) 1212, 1481
BpuMI CCSGG 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 1504
BsaI GGTCTC 2 cut(s) 420, 939
BsaJI CCNNGG 4 cut(s) 73, 591, 1177, 1350
BsaXI ACNNNNNCTCC 2 cut(s) 1207, 1237
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 972, 1459
Bse118I RCCGGY 2 cut(s) 151, 794
Bse1I ACTGG 6 cut(s) 363, 446, 494, 569, 1340, 1408
Bse21I CCTNAGG 1 cut(s) 908
BseBI CCWGG 3 cut(s) 86, 176, 593
BseDI CCNNGG 4 cut(s) 73, 591, 1177, 1350
BseGI GGATG 4 cut(s) 432, 633, 732, 1336
BseLI CCNNNNNNNGG 3 cut(s) 100, 972, 1459
BseNI ACTGG 6 cut(s) 363, 446, 494, 569, 1340, 1408
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 5 cut(s) 468, 655, 671, 888, 1357
BseYI CCCAGC 1 cut(s) 519
BsgI GTGCAG 3 cut(s) 467, 887, 1364
Bsh1285I CGRYCG 1 cut(s) 799
BshFI GGCC 2 cut(s) 84, 774
BshNI GGYRCC 3 cut(s) 567, 829, 912
BsiEI CGRYCG 1 cut(s) 799
BsiHKAI GWGCWC 1 cut(s) 1171
BsiSI CCGG 3 cut(s) 94, 152, 795
BslI CCNNNNNNNGG 3 cut(s) 100, 972, 1459
BsmAI GTCTC 4 cut(s) 238, 420, 939, 1338
BsmI GAATGC 2 cut(s) 95, 451
BsnI GGCC 2 cut(s) 84, 774
Bso31I GGTCTC 2 cut(s) 420, 939
Bsp1286I GDGCHC 2 cut(s) 607, 1171
Bsp143I GATC 2 cut(s) 555, 1275
BspACI CCGC 4 cut(s) 194, 758, 940, 1474
BspANI GGCC 2 cut(s) 84, 774
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 5 cut(s) 192, 569, 589, 831, 914
BspMAI CTGCAG 4 cut(s) 69, 423, 645, 998
BspPI GGATC 1 cut(s) 550
BspQI GCTCTTC 1 cut(s) 1159
BspT107I GGYRCC 3 cut(s) 567, 829, 912
BspTNI GGTCTC 2 cut(s) 420, 939
BsrBI CCGCTC 1 cut(s) 196
BsrFI RCCGGY 2 cut(s) 151, 794
BsrI ACTGG 6 cut(s) 363, 446, 494, 569, 1340, 1408
BssAI RCCGGY 2 cut(s) 151, 794
BssECI CCNNGG 4 cut(s) 73, 591, 1177, 1350
BssMI GATC 2 cut(s) 555, 1275
BssSI CACGAG 2 cut(s) 239, 472
BssT1I CCWWGG 1 cut(s) 1350
Bst2BI CACGAG 2 cut(s) 239, 472
Bst2UI CCWGG 3 cut(s) 86, 176, 593
Bst4CI ACNGT 5 cut(s) 77, 333, 350, 1223, 1380
Bst6I CTCTTC 1 cut(s) 1159
BstAPI GCANNNNNTGC 1 cut(s) 427
BstBAI YACGTR 1 cut(s) 1504
BstC8I GCNNGC 5 cut(s) 341, 479, 540, 917, 1472
BstDSI CCRYGG 1 cut(s) 73
BstF5I GGATG 4 cut(s) 432, 633, 732, 1336
BstHHI GCGC 1 cut(s) 1040
BstKTI GATC 2 cut(s) 558, 1278
BstMAI GTCTC 4 cut(s) 238, 420, 939, 1338
BstMBI GATC 2 cut(s) 555, 1275
BstMCI CGRYCG 1 cut(s) 799
BstMWI GCNNNNNNNGC 6 cut(s) 90, 202, 427, 898, 1002, 1035
BstNI CCWGG 3 cut(s) 86, 176, 593
BstNSI RCATGY 1 cut(s) 542
BstSCI CCNGG 4 cut(s) 84, 93, 174, 591
BstSFI CTRYAG 4 cut(s) 65, 419, 641, 994
BstSLI GKGCMC 1 cut(s) 607
BstV1I GCAGC 5 cut(s) 468, 655, 671, 888, 1357
Bsu36I CCTNAGG 1 cut(s) 908
BsuRI GGCC 2 cut(s) 84, 774
BtgI CCRYGG 1 cut(s) 73
BtsCI GGATG 4 cut(s) 432, 633, 732, 1336
BtsI GCAGTG 1 cut(s) 428
BtsIMutI CAGTG 6 cut(s) 428, 453, 1152, 1347, 1376, 1415
Cac8I GCNNGC 5 cut(s) 341, 479, 540, 917, 1472
CaiI CAGNNNCTG 3 cut(s) 175, 598, 649
CciI TCATGA 1 cut(s) 9
CfoI GCGC 1 cut(s) 1040
Cfr10I RCCGGY 2 cut(s) 151, 794
Cfr13I GGNCC 4 cut(s) 172, 190, 301, 1150
CseI GACGC 1 cut(s) 512
Csp6I GTAC 4 cut(s) 283, 562, 830, 1447
CviAII CATG 5 cut(s) 10, 145, 539, 754, 1372
CviQI GTAC 4 cut(s) 283, 562, 830, 1447
DpnI GATC 2 cut(s) 557, 1277
DpnII GATC 2 cut(s) 555, 1275
EaeI YGGCCR 1 cut(s) 772
Eam1104I CTCTTC 1 cut(s) 1159
EarI CTCTTC 1 cut(s) 1159
Ecl136II GAGCTC 1 cut(s) 1169
Eco130I CCWWGG 1 cut(s) 1350
Eco147I AGGCCT 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 1171
Eco31I GGTCTC 2 cut(s) 420, 939
Eco47I GGWCC 4 cut(s) 172, 190, 301, 1150
Eco53kI GAGCTC 1 cut(s) 1169
Eco72I CACGTG 1 cut(s) 1504
Eco81I CCTNAGG 1 cut(s) 908
EcoICRI GAGCTC 1 cut(s) 1169
EcoO109I RGGNCCY 1 cut(s) 172
EcoRII CCWGG 3 cut(s) 84, 174, 591
EcoT14I CCWWGG 1 cut(s) 1350
EcoT38I GRGCYC 1 cut(s) 1171
ErhI CCWWGG 1 cut(s) 1350
FaeI CATG 5 cut(s) 13, 148, 542, 757, 1375
FatI CATG 5 cut(s) 9, 144, 538, 753, 1371
FauI CCCGC 1 cut(s) 201
FauNDI CATATG 1 cut(s) 1298
FbaI TGATCA 1 cut(s) 1275
FblI GTMKAC 1 cut(s) 526
Fnu4HI GCNGC 6 cut(s) 482, 644, 660, 902, 1346, 1475
FokI GGATG 4 cut(s) 439, 620, 719, 1323
FriOI GRGCYC 1 cut(s) 1171
Fsp4HI GCNGC 6 cut(s) 482, 644, 660, 902, 1346, 1475
FspBI CTAG 2 cut(s) 365, 1006
GlaI GCGC 1 cut(s) 1039
GluI GCNGC 6 cut(s) 482, 644, 660, 902, 1346, 1475
GsaI CCCAGC 1 cut(s) 523
GsuI CTGGAG 2 cut(s) 477, 1412
HaeIII GGCC 2 cut(s) 84, 774
HapII CCGG 3 cut(s) 94, 152, 795
HgaI GACGC 1 cut(s) 512
HhaI GCGC 1 cut(s) 1040
Hin1II CATG 5 cut(s) 13, 148, 542, 757, 1375
Hin6I GCGC 1 cut(s) 1038
HinP1I GCGC 1 cut(s) 1038
HindIII AAGCTT 2 cut(s) 1107, 1524
HinfI GANTC 9 cut(s) 45, 61, 580, 970, 1078, 1207, 1363, 1464, 1492
HpaII CCGG 3 cut(s) 94, 152, 795
HphI GGTGA 4 cut(s) 132, 1276, 1280, 1339
Hpy166II GTNNAC 2 cut(s) 139, 527
Hpy188III TCNNGA 7 cut(s) 10, 241, 320, 1075, 1153, 1273, 1391
Hpy8I GTNNAC 2 cut(s) 139, 527
HpyAV CCTTC 3 cut(s) 314, 746, 1030
HpyCH4III ACNGT 5 cut(s) 77, 333, 350, 1223, 1380
HpyCH4IV ACGT 4 cut(s) 27, 615, 1070, 1503
HpyF10VI GCNNNNNNNGC 6 cut(s) 90, 202, 427, 898, 1002, 1035
HpySE526I ACGT 4 cut(s) 27, 615, 1070, 1503
Hsp92II CATG 5 cut(s) 13, 148, 542, 757, 1375
HspAI GCGC 1 cut(s) 1038
KpnI GGTACC 1 cut(s) 833
Ksp22I TGATCA 1 cut(s) 1275
Kzo9I GATC 2 cut(s) 555, 1275
LguI GCTCTTC 1 cut(s) 1159
LmnI GCTCC 5 cut(s) 225, 496, 535, 593, 1409
Lsp1109I GCAGC 5 cut(s) 468, 655, 671, 888, 1357
LweI GCATC 2 cut(s) 138, 417
MaeI CTAG 2 cut(s) 365, 1006
MaeII ACGT 4 cut(s) 27, 615, 1070, 1503
MaeIII GTNAC 4 cut(s) 28, 270, 944, 1128
MalI GATC 2 cut(s) 557, 1277
MbiI CCGCTC 1 cut(s) 196
MboI GATC 2 cut(s) 555, 1275
MboII GAAGA 5 cut(s) 988, 1011, 1045, 1176, 1216
MhlI GDGCHC 2 cut(s) 607, 1171
MluCI AATT 7 cut(s) 123, 783, 809, 1012, 1042, 1428, 1454
MlyI GAGTC 3 cut(s) 70, 1087, 1473
MspI CCGG 3 cut(s) 94, 152, 795
MspR9I CCNGG 4 cut(s) 86, 95, 176, 593
Mva1269I GAATGC 2 cut(s) 95, 451
MvaI CCWGG 3 cut(s) 86, 176, 593
MwoI GCNNNNNNNGC 6 cut(s) 90, 202, 427, 898, 1002, 1035
NciI CCSGG 1 cut(s) 95
NdeI CATATG 1 cut(s) 1298
NdeII GATC 2 cut(s) 555, 1275
NlaIII CATG 5 cut(s) 13, 148, 542, 757, 1375
NlaIV GGNNCC 5 cut(s) 192, 569, 589, 831, 914
NmeAIII GCCGAG 1 cut(s) 1494
NmuCI GTSAC 2 cut(s) 28, 944
NspI RCATGY 1 cut(s) 542
PaeI GCATGC 1 cut(s) 542
PagI TCATGA 1 cut(s) 9
PceI AGGCCT 1 cut(s) 84
PciSI GCTCTTC 1 cut(s) 1159
PctI GAATGC 2 cut(s) 95, 451
PfeI GAWTC 6 cut(s) 45, 580, 970, 1207, 1363, 1492
PfoI TCCNGGA 1 cut(s) 174
PkrI GCNGC 6 cut(s) 483, 645, 661, 903, 1347, 1476
PleI GAGTC 3 cut(s) 69, 1086, 1472
PmaCI CACGTG 1 cut(s) 1504
PmlI CACGTG 1 cut(s) 1504
PpsI GAGTC 3 cut(s) 69, 1086, 1472
Ppu21I YACGTR 1 cut(s) 1504
PpuMI RGGWCCY 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 1171
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 3 cut(s) 84, 174, 591
PspCI CACGTG 1 cut(s) 1504
PspFI CCCAGC 1 cut(s) 519
PspGI CCWGG 3 cut(s) 84, 174, 591
PspN4I GGNNCC 5 cut(s) 192, 569, 589, 831, 914
PspPI GGNCC 4 cut(s) 172, 190, 301, 1150
PspPPI RGGWCCY 1 cut(s) 172
PstI CTGCAG 4 cut(s) 69, 423, 645, 998
PstNI CAGNNNCTG 3 cut(s) 175, 598, 649
RsaI GTAC 4 cut(s) 284, 563, 831, 1448
RsaNI GTAC 4 cut(s) 283, 562, 830, 1447
SacI GAGCTC 1 cut(s) 1171
SapI GCTCTTC 1 cut(s) 1159
SatI GCNGC 6 cut(s) 482, 644, 660, 902, 1346, 1475
Sau3AI GATC 2 cut(s) 555, 1275
Sau96I GGNCC 4 cut(s) 172, 190, 301, 1150
SchI GAGTC 3 cut(s) 70, 1087, 1473
ScrFI CCNGG 4 cut(s) 86, 95, 176, 593
SduI GDGCHC 2 cut(s) 607, 1171
SfaNI GCATC 2 cut(s) 138, 417
SfcI CTRYAG 4 cut(s) 65, 419, 641, 994
SinI GGWCC 4 cut(s) 172, 190, 301, 1150
SmlI CTYRAG 2 cut(s) 1227, 1496
SmoI CTYRAG 2 cut(s) 1227, 1496
SpeI ACTAGT 1 cut(s) 364
SphI GCATGC 1 cut(s) 542
Sse9I AATT 7 cut(s) 123, 783, 809, 1012, 1042, 1428, 1454
SseBI AGGCCT 1 cut(s) 84
SsiI CCGC 4 cut(s) 194, 758, 940, 1474
SspMI CTAG 2 cut(s) 365, 1006
SstI GAGCTC 1 cut(s) 1171
StuI AGGCCT 1 cut(s) 84
StyD4I CCNGG 4 cut(s) 84, 93, 174, 591
StyI CCWWGG 1 cut(s) 1350
TaaI ACNGT 5 cut(s) 77, 333, 350, 1223, 1380
TaiI ACGT 4 cut(s) 30, 618, 1073, 1506
TaqII GACCGA 2 cut(s) 402, 1169
TasI AATT 7 cut(s) 123, 783, 809, 1012, 1042, 1428, 1454
TatI WGTACW 1 cut(s) 561
TauI GCSGC 1 cut(s) 1477
TfiI GAWTC 6 cut(s) 45, 580, 970, 1207, 1363, 1492
TscAI CASTG 6 cut(s) 428, 453, 1152, 1347, 1383, 1415
TseFI GTSAC 2 cut(s) 28, 944
TseI GCWGC 5 cut(s) 481, 643, 659, 901, 1345
Tsp45I GTSAC 2 cut(s) 28, 944
TspDTI ATGAA 3 cut(s) 119, 728, 1376
TspRI CASTG 6 cut(s) 428, 453, 1152, 1347, 1383, 1415
VpaK11BI GGWCC 4 cut(s) 172, 190, 301, 1150
XapI RAATTY 1 cut(s) 123
XceI RCATGY 1 cut(s) 542
XmiI GTMKAC 1 cut(s) 526
XspI CTAG 2 cut(s) 365, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.