Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8366137.1

Orthogroup ID

OG0007082

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 885

Gene Structure 885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8366137.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

agctcaatagctgtaactcagcagccagttcctgtcttccgaccgccagctggggtgcacattcctcattatgctaactacattccttacagtcactactttaacccattctatgttccgcctcctatccaccaatatttgggtaatggagcatttcctcaacaacctcaagcaggtggtgtgtatccagctccaccagcagctgctgccacaggagtcaaatactcactgccacaatacaaagcagggactaatacaggaaactcaaatcacatgggaatggcaagtggatatgggccctatggctcttccccagctggttataatcccagtcctgccacgactgcaggaaacactactcccaatgaagatcttagcacatctcagttcaaggagagtaatgtatacatcaccggacagcagagtgaaggttcatctgtatgggttgctgcacctaaccgagaaatgcccagcttaacaagttcattttacaaccttcctccacagggtcagcatgtgactttcactccaacgcaggctggccatggtttctaccaccctgcacaagcagtatcagctgcagctgtccatccacttctgcaacagtcccaaaccatggctggggcagttgacatggtgggacctgggggaagtgtttatcagcagcctcagcatgcacaacaaatcaactggccgagcaactactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1296

Protein Analysis

235

Amino Acids

24.89

Weight (kDa)

6.77

Isoelectric Point (pI)

61.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55820 AT3G13222
fragaria_vesca	FvH4_6g40450 FvH4_6g40450 FvH4_6g40450 FvH4_6g40450 FvH4_6g40450
prunus_persica	Prupe.3G193000_v2.0.a1 Prupe.3G193000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0155681
rosa_laevigata	RLG00000020854
rosa_multiflora	Rmu_co8254459.1_g000001 Rmu_co8366137.1_g000001 Rmu_sc0014073.1_g000001 Rmu_sc0042011.1_g000001 Rmu_ssc0000223.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093560
rosa_rugosa	Rorug02G0449100 Rorug02G0449200 Rorug02G0449300
rosa_samantha	Rh2AG515200 Rh2BG526300 Rh2CG500100 Rh2DG535100
rosa_wichuraiana	Rw2G042340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	324
AarI	CACCTGC	1 cut(s)	164
Acc36I	ACCTGC	1 cut(s)	164
AccB7I	CCANNNNNTGG	2 cut(s)	139, 616
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	2 cut(s)	44, 119
AcoI	YGGCCR	2 cut(s)	541, 692
AfiI	CCNNNNNNNGG	6 cut(s)	50, 139, 173, 506, 616, 621
AgsI	TTSAA	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	9 cut(s)	3, 11, 50, 191, 203, 317, 474, 578, 584
AluI	AGCT	9 cut(s)	3, 11, 50, 191, 203, 317, 474, 578, 584
Alw21I	GWGCWC	1 cut(s)	60
Alw44I	GTGCAC	1 cut(s)	56
AlwNI	CAGNNNCTG	3 cut(s)	32, 203, 206
AoxI	GGCC	3 cut(s)	296, 541, 692
ApaI	GGGCCC	1 cut(s)	300
ApaLI	GTGCAC	1 cut(s)	56
ApeKI	GCWGC	8 cut(s)	22, 200, 203, 206, 449, 578, 581, 664
AspS9I	GGNCC	3 cut(s)	296, 297, 641
AsuHPI	GGTGA	1 cut(s)	403
AvaII	GGWCC	1 cut(s)	641
BaeGI	GKGCMC	2 cut(s)	60, 300
BalI	TGGCCA	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	60
BbvCI	CCTCAGC	1 cut(s)	669
BbvI	GCAGC	8 cut(s)	34, 190, 193, 212, 436, 565, 593, 676
BccI	CCATC	1 cut(s)	597
BciT130I	CCWGG	1 cut(s)	645
BciVI	GTATCC	1 cut(s)	195
BfmI	CTRYAG	2 cut(s)	345, 579
BfuAI	ACCTGC	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	195
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	8 cut(s)	23, 201, 204, 207, 450, 579, 582, 665
BlsI	GCNGC	8 cut(s)	24, 202, 205, 208, 451, 580, 583, 666
Bme1390I	CCNGG	1 cut(s)	645
Bme18I	GGWCC	1 cut(s)	641
BmgT120I	GGNCC	3 cut(s)	296, 297, 641
BmiI	GGNNCC	2 cut(s)	298, 642
BmrFI	CCNGG	1 cut(s)	645
BmrI	ACTGGG	1 cut(s)	324
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	1 cut(s)	28
Bpu10I	CCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	544, 615, 644
BsaWI	WCCGGW	1 cut(s)	413
BsaXI	ACNNNNNCTCC	2 cut(s)	511, 541
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 139, 173, 506, 616, 621
Bse1I	ACTGG	3 cut(s)	26, 330, 695
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	3 cut(s)	544, 615, 644
BseGI	GGATG	1 cut(s)	589
BseLI	CCNNNNNNNGG	6 cut(s)	50, 139, 173, 506, 616, 621
BseMII	CTCAG	3 cut(s)	32, 398, 683
BseNI	ACTGG	3 cut(s)	26, 330, 695
BseSI	GKGCMC	2 cut(s)	60, 300
BseXI	GCAGC	8 cut(s)	34, 190, 193, 212, 436, 565, 593, 676
BseYI	CCCAGC	4 cut(s)	50, 313, 470, 620
BsgI	GTGCAG	2 cut(s)	435, 546
Bsh1285I	CGRYCG	1 cut(s)	44
BshFI	GGCC	3 cut(s)	298, 543, 694
BsiEI	CGRYCG	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	414
BslFI	GGGAC	3 cut(s)	262, 592, 654
BslI	CCNNNNNNNGG	6 cut(s)	50, 139, 173, 506, 616, 621
BsmFI	GGGAC	3 cut(s)	262, 592, 654
BsnI	GGCC	3 cut(s)	298, 543, 694
Bsp120I	GGGCCC	1 cut(s)	296
Bsp1286I	GDGCHC	2 cut(s)	60, 300
Bsp143I	GATC	1 cut(s)	370
Bsp19I	CCATGG	2 cut(s)	544, 615
BspACI	CCGC	2 cut(s)	44, 119
BspANI	GGCC	3 cut(s)	298, 543, 694
BspCNI	CTCAG	3 cut(s)	31, 397, 682
BspLI	GGNNCC	2 cut(s)	298, 642
BspMAI	CTGCAG	2 cut(s)	349, 583
BspMI	ACCTGC	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	313
BsrI	ACTGG	3 cut(s)	26, 330, 695
BssECI	CCNNGG	3 cut(s)	544, 615, 644
BssMI	GATC	1 cut(s)	370
BssNAI	GTATAC	1 cut(s)	406
BssT1I	CCWWGG	2 cut(s)	544, 615
Bst1107I	GTATAC	1 cut(s)	406
Bst2UI	CCWGG	1 cut(s)	645
Bst4CI	ACNGT	2 cut(s)	92, 606
Bst6I	CTCTTC	1 cut(s)	313
BstAPI	GCANNNNNTGC	1 cut(s)	206
BstC8I	GCNNGC	4 cut(s)	48, 537, 541, 675
BstDEI	CTNAG	4 cut(s)	18, 374, 384, 669
BstDSI	CCRYGG	2 cut(s)	544, 615
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	589
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstMCI	CGRYCG	1 cut(s)	44
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 206, 344, 575, 670
BstNI	CCWGG	1 cut(s)	645
BstNSI	RCATGY	2 cut(s)	518, 677
BstSCI	CCNGG	1 cut(s)	643
BstSFI	CTRYAG	2 cut(s)	345, 579
BstSLI	GKGCMC	2 cut(s)	60, 300
BstV1I	GCAGC	8 cut(s)	34, 190, 193, 212, 436, 565, 593, 676
BstV2I	GAAGAC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BstZ17I	GTATAC	1 cut(s)	406
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	298, 543, 694
BtgI	CCRYGG	2 cut(s)	544, 615
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	1 cut(s)	227
BtsIMutI	CAGTG	1 cut(s)	227
BveI	ACCTGC	1 cut(s)	164
Cac8I	GCNNGC	4 cut(s)	48, 537, 541, 675
CaiI	CAGNNNCTG	3 cut(s)	32, 203, 206
Cfr13I	GGNCC	3 cut(s)	296, 297, 641
CviAII	CATG	6 cut(s)	274, 515, 545, 616, 634, 674
DdeI	CTNAG	4 cut(s)	18, 374, 384, 669
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
EaeI	YGGCCR	2 cut(s)	541, 692
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
EciI	GGCGGA	1 cut(s)	108
Eco130I	CCWWGG	2 cut(s)	544, 615
Eco24I	GRGCYC	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	641
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoO109I	RGGNCCY	2 cut(s)	297, 641
EcoRII	CCWGG	1 cut(s)	643
EcoT14I	CCWWGG	2 cut(s)	544, 615
EcoT38I	GRGCYC	1 cut(s)	300
ErhI	CCWWGG	2 cut(s)	544, 615
FaeI	CATG	6 cut(s)	277, 518, 548, 619, 637, 677
FaqI	GGGAC	3 cut(s)	262, 592, 654
FatI	CATG	6 cut(s)	273, 514, 544, 615, 633, 673
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	8 cut(s)	23, 201, 204, 207, 450, 579, 582, 665
FokI	GGATG	1 cut(s)	576
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	8 cut(s)	23, 201, 204, 207, 450, 579, 582, 665
GluI	GCNGC	8 cut(s)	23, 201, 204, 207, 450, 579, 582, 665
GsaI	CCCAGC	4 cut(s)	54, 317, 474, 624
HaeIII	GGCC	3 cut(s)	298, 543, 694
HapII	CCGG	1 cut(s)	414
Hin1II	CATG	6 cut(s)	277, 518, 548, 619, 637, 677
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	1 cut(s)	216
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	1 cut(s)	403
Hpy166II	GTNNAC	3 cut(s)	58, 406, 631
Hpy188I	TCNGA	1 cut(s)	41
Hpy8I	GTNNAC	3 cut(s)	58, 406, 631
HpyAV	CCTTC	2 cut(s)	422, 506
HpyCH4III	ACNGT	2 cut(s)	92, 606
HpyCH4V	TGCA	7 cut(s)	58, 347, 452, 563, 581, 601, 677
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 206, 344, 575, 670
HpyF3I	CTNAG	4 cut(s)	18, 374, 384, 669
Hsp92II	CATG	6 cut(s)	277, 518, 548, 619, 637, 677
Kzo9I	GATC	1 cut(s)	370
LguI	GCTCTTC	1 cut(s)	313
LmnI	GCTCC	2 cut(s)	149, 196
Lsp1109I	GCAGC	8 cut(s)	34, 190, 193, 212, 436, 565, 593, 676
MaeIII	GTNAC	3 cut(s)	13, 92, 517
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	3 cut(s)	28, 300, 380
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	60, 300
MlsI	TGGCCA	1 cut(s)	543
MluNI	TGGCCA	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	225
MmeI	TCCRAC	2 cut(s)	64, 554
MnlI	CCTC	6 cut(s)	75, 132, 168, 177, 510, 678
Mox20I	TGGCCA	1 cut(s)	543
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	2 cut(s)	102, 476
MslI	CAYNNNNRTG	2 cut(s)	278, 439
Msp20I	TGGCCA	1 cut(s)	543
MspA1I	CMGCKG	5 cut(s)	50, 203, 317, 578, 584
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	645
MwoI	GCNNNNNNNGC	5 cut(s)	197, 206, 344, 575, 670
NcoI	CCATGG	2 cut(s)	544, 615
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	6 cut(s)	277, 518, 548, 619, 637, 677
NlaIV	GGNNCC	2 cut(s)	298, 642
NmuCI	GTSAC	2 cut(s)	92, 517
NspI	RCATGY	2 cut(s)	518, 677
PaeI	GCATGC	1 cut(s)	677
PaqCI	CACCTGC	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	313
PflMI	CCANNNNNTGG	2 cut(s)	139, 616
PkrI	GCNGC	8 cut(s)	24, 202, 205, 208, 451, 580, 583, 666
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PpuMI	RGGWCCY	1 cut(s)	641
PsiI	TTATAA	1 cut(s)	324
Psp5II	RGGWCCY	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	643
PspFI	CCCAGC	4 cut(s)	50, 313, 470, 620
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	2 cut(s)	298, 642
PspOMI	GGGCCC	1 cut(s)	296
PspPI	GGNCC	3 cut(s)	296, 297, 641
PspPPI	RGGWCCY	1 cut(s)	641
PstI	CTGCAG	2 cut(s)	349, 583
PstNI	CAGNNNCTG	3 cut(s)	32, 203, 206
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	5 cut(s)	50, 203, 317, 578, 584
RseI	CAYNNNNRTG	2 cut(s)	278, 439
SapI	GCTCTTC	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	102, 476
SatI	GCNGC	8 cut(s)	23, 201, 204, 207, 450, 579, 582, 665
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	3 cut(s)	296, 297, 641
SchI	GAGTC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	645
SduI	GDGCHC	2 cut(s)	60, 300
SfcI	CTRYAG	2 cut(s)	345, 579
SinI	GGWCC	1 cut(s)	641
SmiMI	CAYNNNNRTG	2 cut(s)	278, 439
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
SphI	GCATGC	1 cut(s)	677
SsiI	CCGC	2 cut(s)	44, 119
SspI	AATATT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	643
StyI	CCWWGG	2 cut(s)	544, 615
TaaI	ACNGT	2 cut(s)	92, 606
Tru1I	TTAA	2 cut(s)	102, 476
Tru9I	TTAA	2 cut(s)	102, 476
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	2 cut(s)	92, 517
TseI	GCWGC	8 cut(s)	22, 200, 203, 206, 449, 578, 581, 664
Tsp45I	GTSAC	2 cut(s)	92, 517
TspDTI	ATGAA	3 cut(s)	381, 423, 474
TspRI	CASTG	1 cut(s)	234
Van91I	CCANNNNNTGG	2 cut(s)	139, 616
VneI	GTGCAC	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	641
XagI	CCTNNNNNAGG	1 cut(s)	171
XceI	RCATGY	2 cut(s)	518, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	617
XmiI	GTMKAC	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.