Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011962

Physical Location & Seq

Genomic Coordinates Reverse (-)

20946571 .. 20949281

Gene Structure 2711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCATGCGTGGGAGGGAAGGATTGGTATTTCTACAGCCAAAGAGACCGAAAATACGCGACGGGGCTGAGAACTAACCGAGCAACGGCCACCGGATATTGGAAAGCCACCGGCAAAGACAGAACCATTCTAAGAAAGGGTAAGCTAGTTGGGATGAGGAAGACATTGGTTTTCTATCAAGGTCGAGCTCCTCGAGGCCGTAAAACCGATTGGGTCATGCACGAATTCCGTCTCCAAGGATCTCATCATCCTCCCAATCATTCTCTGAGCTCTCCAAAGGAAGACTGGGTCTTGTGTAGGGTATTCCATAAGAATACGGAAGGAGTTATATGTAGAGACAACATGGGAAGCTGTTTTGATGAGACAGCCTCTGCATCGCTTCCTCCACTGATGGATCCTTACATCAACTTTGACCAAGAACCCTCTTCTTATCTCAGTGATGATCATCACTACATCATCAATGAGCACGTACCCTGCTTCTCCAATTTGTCACAGAACCAAACCTTAAACTCGAACCTAACCAACTCAGTCTCTGAACTCAAGATTCCATGCAAGAACCCTAACCCCTTGTTTACTGGTGGTTCAGCCTCAGCCACGCTCACAGGCCTCGACTCATTCTGTTCTTCAGATCAGATGGTTCTCAGAGCTCTACTCAGTCAGCTCACTAAGATTGATGGAAGCCTCGGGCCTAAAGAATCACAGAGTTATGGAGAAGGTAGCTCGGAGAGCCTCCTGACCGACATCGGTATTCCAAGCACTGTTTGGAATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

257

Amino Acids

28.65

Weight (kDa)

8.38

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	4 - 78	6.1e-25	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56010 AT1G56010 AT3G12977 AT3G12977
fragaria_vesca	FvH4_3g16040
malus_domestica	MD10G1198400.v1.1
prunus_persica	Prupe.4G143600_v2.0.a1
pyrus_communis	pycom05g19830 pycom10g17110
rosa_chinensis	RchiOBHm_Chr5g0027011
rosa_laevigata	RLG00000032977 RLG00000032981
rosa_multiflora	Rmu_sc0000882.1_g000012
rosa_roxburghii	Rroxscaffold_1G00052480
rosa_rugosa	Rorug05G0096600
rosa_samantha	Rh5AG190000 Rh5BG187600 Rh5CG207400
rosa_wichuraiana	Rw5G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	192
AccII	CGCG	1 cut(s)	59
AclWI	GGATC	3 cut(s)	247, 389, 402
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	1 cut(s)	224
AcuI	CTGAAG	1 cut(s)	609
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	2 cut(s)	85, 99
AluBI	AGCT	7 cut(s)	145, 188, 270, 351, 647, 661, 720
AluI	AGCT	7 cut(s)	145, 188, 270, 351, 647, 661, 720
Alw21I	GWGCWC	4 cut(s)	190, 272, 468, 649
Alw26I	GTCTC	5 cut(s)	39, 236, 330, 356, 535
AlwI	GGATC	3 cut(s)	247, 389, 402
AlwNI	CAGNNNCTG	2 cut(s)	371, 533
Ama87I	CYCGRG	2 cut(s)	192, 683
AoxI	GGCC	4 cut(s)	87, 196, 604, 686
ApoI	RAATTY	1 cut(s)	224
AspS9I	GGNCC	1 cut(s)	686
AvaI	CYCGRG	2 cut(s)	192, 683
BamHI	GGATCC	1 cut(s)	394
BanII	GRGCYC	3 cut(s)	190, 272, 649
BbsI	GAAGAC	2 cut(s)	167, 288
Bbv12I	GWGCWC	4 cut(s)	190, 272, 468, 649
BbvCI	CCTCAGC	1 cut(s)	589
BccI	CCATC	3 cut(s)	385, 628, 668
BceAI	ACGGC	2 cut(s)	102, 183
BclI	TGATCA	1 cut(s)	442
BcoDI	GTCTC	5 cut(s)	39, 236, 330, 356, 535
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	34
BmeT110I	CYCGRG	2 cut(s)	192, 683
BmgT120I	GGNCC	1 cut(s)	686
BmiI	GGNNCC	1 cut(s)	396
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	1 cut(s)	383
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	2 cut(s)	167, 288
BplI	GAGNNNNNCTC	4 cut(s)	353, 385, 636, 668
Bpu10I	CCTNAGC	1 cut(s)	589
BpuEI	CTTGAG	1 cut(s)	524
BsaAI	YACGTR	1 cut(s)	469
BsaBI	GATNNNNATC	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	235, 682
BsaWI	WCCGGW	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 99
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	290, 580
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	235, 682
BseGI	GGATG	2 cut(s)	159, 247
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	85, 99
BseMII	CTCAG	7 cut(s)	59, 257, 448, 540, 603, 655, 667
BseNI	ACTGG	2 cut(s)	290, 580
BseRI	GAGGAG	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	4 cut(s)	89, 198, 606, 688
BsiHKAI	GWGCWC	4 cut(s)	190, 272, 468, 649
BsiHKCI	CYCGRG	2 cut(s)	192, 683
BsiSI	CCGG	2 cut(s)	93, 111
BslI	CCNNNNNNNGG	2 cut(s)	85, 99
BsmAI	GTCTC	5 cut(s)	39, 236, 330, 356, 535
BsmBI	CGTCTC	1 cut(s)	236
BsnI	GGCC	4 cut(s)	89, 198, 606, 688
Bso31I	GGTCTC	1 cut(s)	39
BsoBI	CYCGRG	2 cut(s)	192, 683
Bsp1286I	GDGCHC	4 cut(s)	190, 272, 468, 649
Bsp143I	GATC	4 cut(s)	239, 394, 442, 628
BspANI	GGCC	4 cut(s)	89, 198, 606, 688
BspCNI	CTCAG	7 cut(s)	60, 258, 447, 539, 602, 654, 666
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	396
BspPI	GGATC	3 cut(s)	247, 389, 402
BspTNI	GGTCTC	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	2 cut(s)	290, 580
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	2 cut(s)	235, 682
BssMI	GATC	4 cut(s)	239, 394, 442, 628
BssT1I	CCWWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	760
Bst6I	CTCTTC	1 cut(s)	430
BstBAI	YACGTR	1 cut(s)	469
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	9 cut(s)	68, 131, 266, 434, 526, 589, 641, 653, 666
BstF5I	GGATG	2 cut(s)	159, 247
BstFNI	CGCG	1 cut(s)	59
BstKTI	GATC	4 cut(s)	242, 397, 445, 631
BstMAI	GTCTC	5 cut(s)	39, 236, 330, 356, 535
BstMBI	GATC	4 cut(s)	239, 394, 442, 628
BstMWI	GCNNNNNNNGC	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	9
BstSFI	CTRYAG	1 cut(s)	34
BstUI	CGCG	1 cut(s)	59
BstV2I	GAAGAC	2 cut(s)	167, 288
BstX2I	RGATCY	2 cut(s)	239, 394
BstYI	RGATCY	2 cut(s)	239, 394
BsuRI	GGCC	4 cut(s)	89, 198, 606, 688
BtgZI	GCGATG	1 cut(s)	360
BtsCI	GGATG	2 cut(s)	159, 247
BtsIMutI	CAGTG	3 cut(s)	386, 442, 756
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	2 cut(s)	371, 533
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	686
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	4 cut(s)	6, 217, 343, 549
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	9 cut(s)	68, 131, 266, 434, 526, 589, 641, 653, 666
DpnI	GATC	4 cut(s)	241, 396, 444, 630
DpnII	GATC	4 cut(s)	239, 394, 442, 628
EaeI	YGGCCR	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	430
EarI	CTCTTC	1 cut(s)	430
Ecl136II	GAGCTC	3 cut(s)	188, 270, 647
Eco130I	CCWWGG	1 cut(s)	235
Eco147I	AGGCCT	1 cut(s)	606
Eco24I	GRGCYC	3 cut(s)	190, 272, 649
Eco31I	GGTCTC	1 cut(s)	39
Eco53kI	GAGCTC	3 cut(s)	188, 270, 647
Eco57I	CTGAAG	1 cut(s)	609
Eco88I	CYCGRG	2 cut(s)	192, 683
EcoICRI	GAGCTC	3 cut(s)	188, 270, 647
EcoRI	GAATTC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	235
EcoT38I	GRGCYC	3 cut(s)	190, 272, 649
ErhI	CCWWGG	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	236
FaeI	CATG	4 cut(s)	9, 220, 346, 552
FaiI	YATR	8 cut(s)	7, 218, 309, 329, 331, 344, 550, 708
FatI	CATG	4 cut(s)	5, 216, 342, 548
FbaI	TGATCA	1 cut(s)	442
FokI	GGATG	2 cut(s)	166, 234
FriOI	GRGCYC	3 cut(s)	190, 272, 649
FspBI	CTAG	1 cut(s)	146
HaeIII	GGCC	4 cut(s)	89, 198, 606, 688
HapII	CCGG	2 cut(s)	93, 111
Hin1II	CATG	4 cut(s)	9, 220, 346, 552
HinfI	GANTC	3 cut(s)	544, 611, 695
HpaII	CCGG	2 cut(s)	93, 111
Hpy166II	GTNNAC	1 cut(s)	573
Hpy188I	TCNGA	6 cut(s)	267, 535, 628, 633, 644, 724
Hpy188III	TCNNGA	2 cut(s)	541, 733
Hpy8I	GTNNAC	1 cut(s)	573
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	13, 314, 707
HpyCH4III	ACNGT	1 cut(s)	760
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	3 cut(s)	220, 374, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	726
HpyF3I	CTNAG	9 cut(s)	68, 131, 266, 434, 526, 589, 641, 653, 666
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	4 cut(s)	9, 220, 346, 552
Ksp22I	TGATCA	1 cut(s)	442
Kzo9I	GATC	4 cut(s)	239, 394, 442, 628
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	7 cut(s)	106, 124, 271, 487, 561, 588, 746
LweI	GCATC	1 cut(s)	383
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	489
MalI	GATC	4 cut(s)	241, 396, 444, 630
MboI	GATC	4 cut(s)	239, 394, 442, 628
MboII	GAAGA	4 cut(s)	172, 293, 417, 615
MflI	RGATCY	2 cut(s)	239, 394
MhlI	GDGCHC	4 cut(s)	190, 272, 468, 649
MluCI	AATT	3 cut(s)	224, 484, 766
MlyI	GAGTC	1 cut(s)	605
MseI	TTAA	1 cut(s)	506
MspI	CCGG	2 cut(s)	93, 111
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	726
NdeII	GATC	4 cut(s)	239, 394, 442, 628
NlaIII	CATG	4 cut(s)	9, 220, 346, 552
NlaIV	GGNNCC	1 cut(s)	396
NmuCI	GTSAC	1 cut(s)	489
NspI	RCATGY	1 cut(s)	9
PaeI	GCATGC	1 cut(s)	9
PaeR7I	CTCGAG	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	606
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	544, 695
PflFI	GACNNNGTC	1 cut(s)	287
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
Ppu21I	YACGTR	1 cut(s)	469
Psp124BI	GAGCTC	3 cut(s)	190, 272, 649
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	686
PspXI	VCTCGAGB	1 cut(s)	192
PstNI	CAGNNNCTG	2 cut(s)	371, 533
PsuI	RGATCY	2 cut(s)	239, 394
PsyI	GACNNNGTC	1 cut(s)	287
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
SacI	GAGCTC	3 cut(s)	190, 272, 649
SaqAI	TTAA	1 cut(s)	506
Sau3AI	GATC	4 cut(s)	239, 394, 442, 628
Sau96I	GGNCC	1 cut(s)	686
SchI	GAGTC	1 cut(s)	605
SduI	GDGCHC	4 cut(s)	190, 272, 468, 649
SfaNI	GCATC	1 cut(s)	383
SfcI	CTRYAG	1 cut(s)	34
Sfr274I	CTCGAG	1 cut(s)	192
SlaI	CTCGAG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	192, 539
SmoI	CTYRAG	2 cut(s)	192, 539
SphI	GCATGC	1 cut(s)	9
Sse9I	AATT	3 cut(s)	224, 484, 766
SseBI	AGGCCT	1 cut(s)	606
SspMI	CTAG	1 cut(s)	146
SstI	GAGCTC	3 cut(s)	190, 272, 649
StuI	AGGCCT	1 cut(s)	606
StyI	CCWWGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	760
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	4 cut(s)	184, 193, 512, 609
TaqII	GACCGA	2 cut(s)	63, 752
TasI	AATT	3 cut(s)	224, 484, 766
TfiI	GAWTC	2 cut(s)	544, 695
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TscAI	CASTG	3 cut(s)	393, 442, 763
TseFI	GTSAC	1 cut(s)	489
Tsp45I	GTSAC	1 cut(s)	489
TspGWI	ACGGA	2 cut(s)	218, 332
TspRI	CASTG	3 cut(s)	393, 442, 763
Tth111I	GACNNNGTC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	224
XceI	RCATGY	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	2 cut(s)	282, 759
XhoI	CTCGAG	1 cut(s)	192
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.