Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011962

Physical Location & Seq

Genomic Coordinates Forward (+)

10100908 .. 10105974

Gene Structure 5067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g16040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGAGTAACATAAGCATGGTGGAGGCAAAATTGCCACCTGGGTTCAGGTTCCATCCCAGAGATGAAGAGCTGGTCTGTGATTATCTGATGAAGAAGGTGACTCACTCCGACTCCACTCTCATGATCGAAGTCGACCTCAACAAGTGTGAGCCTTGGGACATTCCTGAAAATGCATGTGTGGGAGGAAAGGAATGGTATTTCTACAGTCAGCGTGATCGGAAATACGCGACGGGGCTACGAACAAACCGAGCAACTGCAACTGGGTATTGGAAGGCAACCGGAAAAGACAGGCCAATCTTTCGCAAGGGAACAACCCTGGTAGGTATGAGGAAAACCTTGGTGTTCTACCAGGGTCGGGCTCCCAAAGGCAGAAAATCCGACTGGGTGATGCATGAGTTCCGGCTTGAAGGTCCCTTTGGTCCTCCCAAAATATCACCTGGGAAGGAAGATTGGGTTCTCTGCAGGGTGTTCTACAAGAACAGAGAACTAATTGCTGCCAAACCCAGCATGGGATCATCGATAAGCTGCTACGAAGATGACACAGGCTCTTCGTCACATCATCTCCCAGCTCTGATGGACTCTTACATCAGCTTCGATGGCCCAACTCCTCAACTTCACCATGATAATGAGTATCTTCGTCATCATCAGCAAGTGCCCTGCTTCTCCATTGACACCCTTTTCTCTCAAAACCAAATGACTACCAACCCAAATTTCACCACTACTTCTTACGGCAACATTCTGGAACAGAACGCCGGCTGCGGCGGCGAGTTGTCGAATGCGGGGACAAGTACATTTCTTGACAATGCTAATTTTTCATCTGACAATAAGAAGGTACTGAAAGCAGTTTTAAGTCAGCTAACCAAGATGGAAACCAGCTGCTACCCTAACACGCCGTCATCTGTCTTCAAAGGCTCATCACCATCAAGCTTCGGAGGAGAATTCGAAGCTGCCGGAAGTAGTTCGGATAACTACCTGTCTGATCATCAAGTTGGTATGCCCAGTGTTTGGAGTCACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

340

Amino Acids

37.99

Weight (kDa)

6.83

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 135	8.7e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56010 AT1G56010 AT3G12977 AT3G12977
fragaria_vesca	FvH4_3g16040
malus_domestica	MD10G1198400.v1.1
prunus_persica	Prupe.4G143600_v2.0.a1
pyrus_communis	pycom05g19830 pycom10g17110
rosa_chinensis	RchiOBHm_Chr5g0027011
rosa_laevigata	RLG00000032977 RLG00000032981
rosa_multiflora	Rmu_sc0000882.1_g000012
rosa_roxburghii	Rroxscaffold_1G00052480
rosa_rugosa	Rorug05G0096600
rosa_samantha	Rh5AG190000 Rh5BG187600 Rh5CG207400
rosa_wichuraiana	Rw5G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1005
AccI	GTMKAC	1 cut(s)	132
AccII	CGCG	1 cut(s)	227
AciI	CCGC	3 cut(s)	759, 762, 779
AclWI	GGATC	1 cut(s)	520
AcsI	RAATTY	2 cut(s)	709, 938
AfaI	GTAC	2 cut(s)	790, 834
AfiI	CCNNNNNNNGG	3 cut(s)	355, 509, 1005
AgsI	TTSAA	2 cut(s)	407, 907
AjnI	CCWGG	4 cut(s)	37, 315, 348, 436
AjuI	GAANNNNNNNTTGG	4 cut(s)	399, 431, 695, 727
AluBI	AGCT	8 cut(s)	70, 525, 569, 591, 856, 876, 927, 947
AluI	AGCT	8 cut(s)	70, 525, 569, 591, 856, 876, 927, 947
AlwI	GGATC	1 cut(s)	520
AoxI	GGCC	2 cut(s)	290, 598
ApeKI	GCWGC	5 cut(s)	494, 525, 756, 876, 947
ApoI	RAATTY	2 cut(s)	709, 938
Asp700I	GAANNNNTTC	1 cut(s)	958
AspS9I	GGNCC	3 cut(s)	410, 419, 599
AsuHPI	GGTGA	6 cut(s)	109, 397, 426, 608, 706, 909
AsuII	TTCGAA	1 cut(s)	942
AvaII	GGWCC	2 cut(s)	410, 419
BaeGI	GKGCMC	1 cut(s)	657
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	895
BbvI	GCAGC	5 cut(s)	481, 512, 743, 863, 934
BccI	CCATC	5 cut(s)	60, 568, 590, 859, 928
BceAI	ACGGC	2 cut(s)	745, 877
BciT130I	CCWGG	4 cut(s)	39, 317, 350, 438
BclI	TGATCA	1 cut(s)	979
BfmI	CTRYAG	2 cut(s)	202, 460
BisI	GCNGC	7 cut(s)	495, 526, 757, 760, 763, 877, 948
BlsI	GCNGC	7 cut(s)	496, 527, 758, 761, 764, 878, 949
Bme1390I	CCNGG	4 cut(s)	39, 317, 350, 438
Bme18I	GGWCC	2 cut(s)	410, 419
BmgT120I	GGNCC	3 cut(s)	410, 419, 599
BmiI	GGNNCC	3 cut(s)	50, 360, 412
BmrFI	CCNGG	4 cut(s)	39, 317, 350, 438
BmrI	ACTGGG	3 cut(s)	270, 391, 993
BmsI	GCATC	1 cut(s)	378
BmuI	ACTGGG	3 cut(s)	270, 391, 993
BpiI	GAAGAC	1 cut(s)	895
Bpu14I	TTCGAA	1 cut(s)	942
Bsa29I	ATCGAT	1 cut(s)	518
BsaJI	CCNNGG	6 cut(s)	38, 152, 315, 336, 349, 437
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 546, 576
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 509, 1005
Bse118I	RCCGGY	1 cut(s)	752
Bse1I	ACTGG	3 cut(s)	265, 386, 999
BseBI	CCWGG	4 cut(s)	39, 317, 350, 438
BseCI	ATCGAT	1 cut(s)	518
BseDI	CCNNGG	6 cut(s)	38, 152, 315, 336, 349, 437
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	3 cut(s)	355, 509, 1005
BseNI	ACTGG	3 cut(s)	265, 386, 999
BseRI	GAGGAG	2 cut(s)	597, 948
BseSI	GKGCMC	1 cut(s)	657
BseXI	GCAGC	5 cut(s)	481, 512, 743, 863, 934
BseYI	CCCAGC	2 cut(s)	503, 565
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	2 cut(s)	292, 600
BshVI	ATCGAT	1 cut(s)	518
BsiSI	CCGG	4 cut(s)	279, 400, 753, 951
BslFI	GGGAC	3 cut(s)	170, 396, 796
BslI	CCNNNNNNNGG	3 cut(s)	355, 509, 1005
BsmFI	GGGAC	3 cut(s)	170, 396, 796
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	2 cut(s)	292, 600
Bsp119I	TTCGAA	1 cut(s)	942
Bsp1286I	GDGCHC	2 cut(s)	361, 657
Bsp143I	GATC	4 cut(s)	123, 214, 512, 979
BspACI	CCGC	3 cut(s)	759, 762, 779
BspANI	GGCC	2 cut(s)	292, 600
BspDI	ATCGAT	1 cut(s)	518
BspFNI	CGCG	1 cut(s)	227
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	50, 360, 412
BspMAI	CTGCAG	1 cut(s)	464
BspPI	GGATC	1 cut(s)	520
BspQI	GCTCTTC	2 cut(s)	60, 553
BspT104I	TTCGAA	1 cut(s)	942
BsrFI	RCCGGY	1 cut(s)	752
BsrI	ACTGG	3 cut(s)	265, 386, 999
BssAI	RCCGGY	1 cut(s)	752
BssECI	CCNNGG	6 cut(s)	38, 152, 315, 336, 349, 437
BssMI	GATC	4 cut(s)	123, 214, 512, 979
BssT1I	CCWWGG	2 cut(s)	152, 336
Bst2UI	CCWGG	4 cut(s)	39, 317, 350, 438
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	60, 553
BstBI	TTCGAA	1 cut(s)	942
BstC8I	GCNNGC	1 cut(s)	754
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	227
BstKTI	GATC	4 cut(s)	126, 217, 515, 982
BstMBI	GATC	4 cut(s)	123, 214, 512, 979
BstMWI	GCNNNNNNNGC	2 cut(s)	597, 762
BstNI	CCWGG	4 cut(s)	39, 317, 350, 438
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	4 cut(s)	37, 315, 348, 436
BstSFI	CTRYAG	2 cut(s)	202, 460
BstSLI	GKGCMC	1 cut(s)	657
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	5 cut(s)	481, 512, 743, 863, 934
BstV2I	GAAGAC	1 cut(s)	895
Bsu15I	ATCGAT	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	292, 600
BsuTUI	ATCGAT	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	1006
Cac8I	GCNNGC	1 cut(s)	754
CciI	TCATGA	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	752
Cfr13I	GGNCC	3 cut(s)	410, 419, 599
ClaI	ATCGAT	1 cut(s)	518
Csp6I	GTAC	2 cut(s)	789, 833
CviAII	CATG	6 cut(s)	16, 121, 174, 392, 508, 620
CviQI	GTAC	2 cut(s)	789, 833
DpnI	GATC	4 cut(s)	125, 216, 514, 981
DpnII	GATC	4 cut(s)	123, 214, 512, 979
Eam1104I	CTCTTC	2 cut(s)	60, 553
EarI	CTCTTC	2 cut(s)	60, 553
Eco130I	CCWWGG	2 cut(s)	152, 336
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	410, 419
EcoO109I	RGGNCCY	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	938
EcoRII	CCWGG	4 cut(s)	37, 315, 348, 436
EcoT14I	CCWWGG	2 cut(s)	152, 336
EcoT22I	ATGCAT	2 cut(s)	175, 393
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	2 cut(s)	152, 336
FaeI	CATG	6 cut(s)	19, 124, 177, 395, 511, 623
FaiI	YATR	9 cut(s)	11, 17, 122, 175, 326, 393, 509, 621, 995
FaqI	GGGAC	3 cut(s)	170, 396, 796
FatI	CATG	6 cut(s)	15, 120, 173, 391, 507, 619
FauI	CCCGC	1 cut(s)	772
FbaI	TGATCA	1 cut(s)	979
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	7 cut(s)	495, 526, 757, 760, 763, 877, 948
FokI	GGATG	1 cut(s)	39
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	7 cut(s)	495, 526, 757, 760, 763, 877, 948
GluI	GCNGC	7 cut(s)	495, 526, 757, 760, 763, 877, 948
GsaI	CCCAGC	2 cut(s)	507, 569
HaeIII	GGCC	2 cut(s)	292, 600
HapII	CCGG	4 cut(s)	279, 400, 753, 951
Hin1II	CATG	6 cut(s)	19, 124, 177, 395, 511, 623
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	925
HinfI	GANTC	4 cut(s)	100, 110, 578, 1009
HpaII	CCGG	4 cut(s)	279, 400, 753, 951
HphI	GGTGA	6 cut(s)	109, 397, 426, 608, 706, 909
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	9 cut(s)	87, 109, 219, 379, 573, 820, 932, 964, 979
Hpy188III	TCNNGA	4 cut(s)	121, 164, 740, 797
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	5 cut(s)	88, 265, 401, 436, 823
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	4 cut(s)	173, 257, 391, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	597, 762
Hsp92II	CATG	6 cut(s)	19, 124, 177, 395, 511, 623
KroI	GCCGGC	1 cut(s)	752
KroNI	GCCGGC	1 cut(s)	754
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	4 cut(s)	123, 214, 512, 979
LguI	GCTCTTC	2 cut(s)	60, 553
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	5 cut(s)	481, 512, 743, 863, 934
LweI	GCATC	1 cut(s)	378
MaeIII	GTNAC	4 cut(s)	5, 97, 552, 1010
MalI	GATC	4 cut(s)	125, 216, 514, 981
MboI	GATC	4 cut(s)	123, 214, 512, 979
MboII	GAAGA	7 cut(s)	77, 103, 458, 540, 545, 626, 895
MhlI	GDGCHC	2 cut(s)	361, 657
MluCI	AATT	5 cut(s)	29, 489, 709, 808, 938
MlyI	GAGTC	4 cut(s)	94, 104, 572, 1018
MmeI	TCCRAC	2 cut(s)	132, 402
MnlI	CCTC	7 cut(s)	16, 146, 176, 321, 432, 618, 926
Mph1103I	ATGCAT	2 cut(s)	175, 393
MroNI	GCCGGC	1 cut(s)	752
MroXI	GAANNNNTTC	1 cut(s)	958
MseI	TTAA	1 cut(s)	848
MslI	CAYNNNNRTG	3 cut(s)	14, 119, 624
MspA1I	CMGCKG	1 cut(s)	876
MspI	CCGG	4 cut(s)	279, 400, 753, 951
MspR9I	CCNGG	4 cut(s)	39, 317, 350, 438
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	4 cut(s)	39, 317, 350, 438
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	2 cut(s)	597, 762
NaeI	GCCGGC	1 cut(s)	754
NdeII	GATC	4 cut(s)	123, 214, 512, 979
NgoMIV	GCCGGC	1 cut(s)	752
NlaIII	CATG	6 cut(s)	19, 124, 177, 395, 511, 623
NlaIV	GGNNCC	3 cut(s)	50, 360, 412
NmuCI	GTSAC	3 cut(s)	97, 552, 1010
NsiI	ATGCAT	2 cut(s)	175, 393
NspI	RCATGY	1 cut(s)	177
NspV	TTCGAA	1 cut(s)	942
PagI	TCATGA	1 cut(s)	120
PciSI	GCTCTTC	2 cut(s)	60, 553
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PctI	GAATGC	1 cut(s)	781
PdiI	GCCGGC	1 cut(s)	754
PdmI	GAANNNNTTC	1 cut(s)	958
PflMI	CCANNNNNTGG	1 cut(s)	1005
PkrI	GCNGC	7 cut(s)	496, 527, 758, 761, 764, 878, 949
PleI	GAGTC	4 cut(s)	94, 104, 572, 1017
PpsI	GAGTC	4 cut(s)	94, 104, 572, 1017
PpuMI	RGGWCCY	1 cut(s)	410
Psp5II	RGGWCCY	1 cut(s)	410
Psp6I	CCWGG	4 cut(s)	37, 315, 348, 436
PspFI	CCCAGC	2 cut(s)	503, 565
PspGI	CCWGG	4 cut(s)	37, 315, 348, 436
PspN4I	GGNNCC	3 cut(s)	50, 360, 412
PspPI	GGNCC	3 cut(s)	410, 419, 599
PspPPI	RGGWCCY	1 cut(s)	410
PstI	CTGCAG	1 cut(s)	464
PvuII	CAGCTG	1 cut(s)	876
RsaI	GTAC	2 cut(s)	790, 834
RsaNI	GTAC	2 cut(s)	789, 833
RseI	CAYNNNNRTG	3 cut(s)	14, 119, 624
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	2 cut(s)	60, 553
SaqAI	TTAA	1 cut(s)	848
SatI	GCNGC	7 cut(s)	495, 526, 757, 760, 763, 877, 948
Sau3AI	GATC	4 cut(s)	123, 214, 512, 979
Sau96I	GGNCC	3 cut(s)	410, 419, 599
SchI	GAGTC	4 cut(s)	94, 104, 572, 1018
ScrFI	CCNGG	4 cut(s)	39, 317, 350, 438
SduI	GDGCHC	2 cut(s)	361, 657
SfaNI	GCATC	1 cut(s)	378
SfcI	CTRYAG	2 cut(s)	202, 460
SfuI	TTCGAA	1 cut(s)	942
SinI	GGWCC	2 cut(s)	410, 419
SmiMI	CAYNNNNRTG	3 cut(s)	14, 119, 624
Sse9I	AATT	5 cut(s)	29, 489, 709, 808, 938
SsiI	CCGC	3 cut(s)	759, 762, 779
StyD4I	CCNGG	4 cut(s)	37, 315, 348, 436
StyI	CCWWGG	2 cut(s)	152, 336
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	6 cut(s)	126, 132, 518, 594, 773, 942
TasI	AATT	5 cut(s)	29, 489, 709, 808, 938
TatI	WGTACW	1 cut(s)	788
TauI	GCSGC	2 cut(s)	762, 765
Tru1I	TTAA	1 cut(s)	848
Tru9I	TTAA	1 cut(s)	848
TscAI	CASTG	1 cut(s)	1006
TseFI	GTSAC	3 cut(s)	97, 552, 1010
TseI	GCWGC	5 cut(s)	494, 525, 756, 876, 947
Tsp45I	GTSAC	3 cut(s)	97, 552, 1010
TspDTI	ATGAA	3 cut(s)	78, 104, 804
TspRI	CASTG	1 cut(s)	1006
Van91I	CCANNNNNTGG	1 cut(s)	1005
VpaK11BI	GGWCC	2 cut(s)	410, 419
XapI	RAATTY	2 cut(s)	709, 938
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	958
Zsp2I	ATGCAT	2 cut(s)	175, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.