Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011962

Physical Location & Seq

Genomic Coordinates Reverse (-)

20278857 .. 20283922

Gene Structure 5066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g17110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGTGGAGGCAAAGTTGCCACCAGGGTTCAGGTTCCATCCAAGAGACGAAGAGCTTGTGTGTGACTATTTGATGAAGAAGGTGGCTCAATCTGACTCAACCCTTATGATTGAAGTTGACCTCAACAAGTCTGAGCCATGGGATATCCCTGAAAGTGCATGTGTGGGAAGGAAAGAATGGTACTTCTACAGTCAGCGTGATCGTAAATATGCAACAGGGCTTCGAACAAACCGTGCAACTGCAACAGGGTATTGGAAGGCCACAGGAAAAGATAGGTCAATCCGTCGCAAAGGAATCCTTGTTGGGATGAGAAAAACCTTGGTCTTCTACCAGGGCCGAGCTCCCAAAGGCAGAAAATCCGATTGGGTCATGCATGAGTTTCGGCTTGAAGGTCCTCTTAGTCCTCCTAAAATCTCTCCTCTCAAGGAAGATTGGGTTTTGTGCAGAGTGCTTTATAAAAACCGAGAGATAGCTGCCAAACCCAGCATGGGAATTAGCTGTTACGATGACACGAGCACTTTAACTCTGCCTGCCTTGATGGACTCCTACATCAGTTTCGATGGCCAAACTCAGACTCAGACACACACAGAGACTCAACCCCAAGAGTATGAGCAAGTGCCCTGCTTCTCCATGTTCTCCCAGAACCAAACCAACCCAATTTTCACACACACTGACATCACCAATTCTCAACCAAACATACCCACCAAGCACAATAATAATACCAACACAACCACATTTGGAGGGTTGCCAAATGTGACCAATTTTCTTGACCCTTTTTCATGTGACAAAAAGGTGCTAAAAGCTATTTTGAGTCACCTTACCAAGATGGAAAGTACCACTTATCCTACTTTGGATGGCTCATCACCAAGCTTTGGGGAAGGAAGTACAGAAAACTACCTATCTGATGTCGGCATGCCCAACAATATTTGGAGCCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

314

Amino Acids

35.66

Weight (kDa)

8.11

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56010 AT1G56010 AT3G12977 AT3G12977
fragaria_vesca	FvH4_3g16040
malus_domestica	MD10G1198400.v1.1
prunus_persica	Prupe.4G143600_v2.0.a1
pyrus_communis	pycom05g19830 pycom10g17110
rosa_chinensis	RchiOBHm_Chr5g0027011
rosa_laevigata	RLG00000032977 RLG00000032981
rosa_multiflora	Rmu_sc0000882.1_g000012
rosa_roxburghii	Rroxscaffold_1G00052480
rosa_rugosa	Rorug05G0096600
rosa_samantha	Rh5AG190000 Rh5BG187600 Rh5CG207400
rosa_wichuraiana	Rw5G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AccB7I	CCANNNNNTGG	1 cut(s)	872
AcoI	YGGCCR	1 cut(s)	562
AfaI	GTAC	3 cut(s)	182, 835, 886
AfiI	CCNNNNNNNGG	2 cut(s)	488, 872
AgsI	TTSAA	2 cut(s)	113, 389
AjnI	CCWGG	2 cut(s)	22, 330
AjuI	GAANNNNNNNTTGG	4 cut(s)	346, 378, 644, 676
AluBI	AGCT	6 cut(s)	55, 341, 473, 498, 803, 870
AluI	AGCT	6 cut(s)	55, 341, 473, 498, 803, 870
Alw21I	GWGCWC	2 cut(s)	343, 518
Alw26I	GTCTC	2 cut(s)	39, 584
AoxI	GGCC	3 cut(s)	258, 334, 562
ApeKI	GCWGC	1 cut(s)	473
AspS9I	GGNCC	2 cut(s)	334, 392
AsuHPI	GGTGA	3 cut(s)	670, 806, 855
AsuII	TTCGAA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	392
BaeGI	GKGCMC	1 cut(s)	621
BalI	TGGCCA	1 cut(s)	564
BanII	GRGCYC	1 cut(s)	343
BauI	CACGAG	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	316
Bbv12I	GWGCWC	2 cut(s)	343, 518
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	5 cut(s)	45, 532, 554, 820, 848
BcgI	CGANNNNNNTGC	2 cut(s)	362, 396
BciT130I	CCWGG	2 cut(s)	24, 332
BcoDI	GTCTC	2 cut(s)	39, 584
BfmI	CTRYAG	1 cut(s)	187
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
Bme1390I	CCNGG	2 cut(s)	24, 332
Bme18I	GGWCC	1 cut(s)	392
BmgT120I	GGNCC	2 cut(s)	334, 392
BmiI	GGNNCC	2 cut(s)	35, 932
BmrFI	CCNGG	2 cut(s)	24, 332
BpiI	GAAGAC	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	407
BsaJI	CCNNGG	4 cut(s)	23, 137, 318, 331
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	488, 872
BseBI	CCWGG	2 cut(s)	24, 332
BseDI	CCNNGG	4 cut(s)	23, 137, 318, 331
BseGI	GGATG	3 cut(s)	37, 312, 859
BseLI	CCNNNNNNNGG	2 cut(s)	488, 872
BseMII	CTCAG	3 cut(s)	123, 584, 590
BseRI	GAGGAG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	621
BseXI	GCAGC	1 cut(s)	460
BseYI	CCCAGC	1 cut(s)	482
BsgI	GTGCAG	1 cut(s)	463
BshFI	GGCC	3 cut(s)	260, 336, 564
BsiHKAI	GWGCWC	2 cut(s)	343, 518
BslI	CCNNNNNNNGG	2 cut(s)	488, 872
BsmAI	GTCTC	2 cut(s)	39, 584
BsmBI	CGTCTC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	260, 336, 564
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	3 cut(s)	343, 518, 621
Bsp143I	GATC	1 cut(s)	199
Bsp19I	CCATGG	1 cut(s)	137
BspANI	GGCC	3 cut(s)	260, 336, 564
BspCNI	CTCAG	3 cut(s)	124, 583, 589
BspLI	GGNNCC	2 cut(s)	35, 932
BspQI	GCTCTTC	1 cut(s)	45
BspT104I	TTCGAA	1 cut(s)	223
BssECI	CCNNGG	4 cut(s)	23, 137, 318, 331
BssMI	GATC	1 cut(s)	199
BssSI	CACGAG	1 cut(s)	511
BssT1I	CCWWGG	2 cut(s)	137, 318
Bst2BI	CACGAG	1 cut(s)	511
Bst2UI	CCWGG	2 cut(s)	24, 332
Bst4CI	ACNGT	2 cut(s)	191, 233
Bst6I	CTCTTC	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	531, 914
BstDEI	CTNAG	4 cut(s)	132, 398, 570, 576
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	3 cut(s)	37, 312, 859
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	39, 584
BstMBI	GATC	1 cut(s)	199
BstNI	CCWGG	2 cut(s)	24, 332
BstNSI	RCATGY	2 cut(s)	162, 916
BstSCI	CCNGG	2 cut(s)	22, 330
BstSFI	CTRYAG	1 cut(s)	187
BstSLI	GKGCMC	1 cut(s)	621
BstV1I	GCAGC	1 cut(s)	460
BstV2I	GAAGAC	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	260, 336, 564
BtgI	CCRYGG	1 cut(s)	137
BtsCI	GGATG	3 cut(s)	37, 312, 859
BtsIMutI	CAGTG	1 cut(s)	669
Cac8I	GCNNGC	2 cut(s)	531, 914
Cfr13I	GGNCC	2 cut(s)	334, 392
Csp6I	GTAC	3 cut(s)	181, 834, 885
CviAII	CATG	8 cut(s)	138, 159, 370, 374, 487, 631, 780, 913
CviQI	GTAC	3 cut(s)	181, 834, 885
DdeI	CTNAG	4 cut(s)	132, 398, 570, 576
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
EaeI	YGGCCR	1 cut(s)	562
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	341
Eco130I	CCWWGG	2 cut(s)	137, 318
Eco24I	GRGCYC	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	2 cut(s)	22, 330
EcoRV	GATATC	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	137, 318
EcoT22I	ATGCAT	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	343
ErhI	CCWWGG	2 cut(s)	137, 318
Esp3I	CGTCTC	1 cut(s)	39
FaeI	CATG	8 cut(s)	141, 162, 373, 377, 490, 634, 783, 916
FalI	AAGNNNNNCTT	6 cut(s)	282, 314, 381, 413, 823, 855
FatI	CATG	8 cut(s)	137, 158, 369, 373, 486, 630, 779, 912
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	3 cut(s)	24, 319, 866
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	1 cut(s)	474
GluI	GCNGC	1 cut(s)	474
GsaI	CCCAGC	1 cut(s)	486
HaeIII	GGCC	3 cut(s)	260, 336, 564
Hin1II	CATG	8 cut(s)	141, 162, 373, 377, 490, 634, 783, 916
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	868
HinfI	GANTC	6 cut(s)	95, 294, 542, 574, 592, 811
HphI	GGTGA	3 cut(s)	670, 806, 855
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	6 cut(s)	94, 133, 361, 573, 579, 904
Hpy188III	TCNNGA	1 cut(s)	767
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	288
HpyAV	CCTTC	5 cut(s)	73, 162, 250, 383, 872
HpyCH4III	ACNGT	2 cut(s)	191, 233
HpyCH4V	TGCA	6 cut(s)	158, 212, 236, 242, 373, 444
HpyF3I	CTNAG	4 cut(s)	132, 398, 570, 576
Hsp92II	CATG	8 cut(s)	141, 162, 373, 377, 490, 634, 783, 916
Kzo9I	GATC	1 cut(s)	199
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	2 cut(s)	346, 930
Lsp1109I	GCAGC	1 cut(s)	460
MaeIII	GTNAC	5 cut(s)	62, 500, 754, 782, 812
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	4 cut(s)	62, 88, 316, 440
MhlI	GDGCHC	3 cut(s)	343, 518, 621
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	4 cut(s)	492, 657, 682, 760
MluNI	TGGCCA	1 cut(s)	564
MlyI	GAGTC	5 cut(s)	89, 536, 568, 586, 820
MnlI	CCTC	5 cut(s)	131, 405, 414, 429, 734
Mox20I	TGGCCA	1 cut(s)	564
Mph1103I	ATGCAT	1 cut(s)	375
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	1 cut(s)	521
Msp20I	TGGCCA	1 cut(s)	564
MspR9I	CCNGG	2 cut(s)	24, 332
MvaI	CCWGG	2 cut(s)	24, 332
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	8 cut(s)	141, 162, 373, 377, 490, 634, 783, 916
NlaIV	GGNNCC	2 cut(s)	35, 932
NmeAIII	GCCGAG	1 cut(s)	362
NmuCI	GTSAC	4 cut(s)	62, 754, 782, 812
NsiI	ATGCAT	1 cut(s)	375
NspI	RCATGY	2 cut(s)	162, 916
NspV	TTCGAA	1 cut(s)	223
PaeI	GCATGC	1 cut(s)	916
PciSI	GCTCTTC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	294
PflMI	CCANNNNNTGG	1 cut(s)	872
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	5 cut(s)	89, 536, 568, 586, 819
PpsI	GAGTC	5 cut(s)	89, 536, 568, 586, 819
PpuMI	RGGWCCY	1 cut(s)	392
PsiI	TTATAA	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	2 cut(s)	22, 330
PspFI	CCCAGC	1 cut(s)	482
PspGI	CCWGG	2 cut(s)	22, 330
PspN4I	GGNNCC	2 cut(s)	35, 932
PspPI	GGNCC	2 cut(s)	334, 392
PspPPI	RGGWCCY	1 cut(s)	392
RsaI	GTAC	3 cut(s)	182, 835, 886
RsaNI	GTAC	3 cut(s)	181, 834, 885
SacI	GAGCTC	1 cut(s)	343
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	2 cut(s)	334, 392
SchI	GAGTC	5 cut(s)	89, 536, 568, 586, 820
ScrFI	CCNGG	2 cut(s)	24, 332
SduI	GDGCHC	3 cut(s)	343, 518, 621
SfcI	CTRYAG	1 cut(s)	187
SfuI	TTCGAA	1 cut(s)	223
SinI	GGWCC	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SphI	GCATGC	1 cut(s)	916
Sse9I	AATT	4 cut(s)	492, 657, 682, 760
SspI	AATATT	1 cut(s)	925
SstI	GAGCTC	1 cut(s)	343
StyD4I	CCNGG	2 cut(s)	22, 330
StyI	CCWWGG	2 cut(s)	137, 318
TaaI	ACNGT	2 cut(s)	191, 233
TaqI	TCGA	2 cut(s)	223, 558
TasI	AATT	4 cut(s)	492, 657, 682, 760
TatI	WGTACW	1 cut(s)	884
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	4 cut(s)	62, 754, 782, 812
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	4 cut(s)	62, 754, 782, 812
TspDTI	ATGAA	2 cut(s)	89, 768
TspGWI	ACGGA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	676
Van91I	CCANNNNNTGG	1 cut(s)	872
VpaK11BI	GGWCC	1 cut(s)	392
XceI	RCATGY	2 cut(s)	162, 916
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.