Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011962

Physical Location & Seq

Genomic Coordinates Reverse (-)

22701588 .. 22703209

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGAAAAACCTTGGTCTTCTACCAGGGTCGAGCTCCCAAAGGCAGAAAATCCGATTGGGTCATGCATGAGTTTCGGGTTGAAGGTCCCCTAGGTCCTCCTAAAATCTCTTCGCTCAAGGAAGATTGGGCTTTGTGCAGAGTGTTTCATAAAAACCGAGAGATAGCCGCCAAACCCAGCATGGGAATTAGCTGTTACGATGACACAAGCACTTCAACTCTGCCTGCCTTGATGGACTCTTACATCAGTTTTGATGGCCGAACTCAATCTCAGACACAAACTCAGACTCAGCCCCAAGAGTCTGAGCAAGTGCCCTGCTTCTCCATGTTCTCCCAGAACCAAAGCCCATTTTTCACACACACTGACATCACTAGTTCTCAACCAAACATACCCACCAAGCACAATAATAACAATGACACAACTACATTTGGAGGGTTGCCAAATATGACCAATTTTCTTGATCCTTTTTCATGTGACAAAATTGTGCTAAATACTGTTTTGAGTCACCTTACCAAGATGGAAAGTACTACTTATCCTACTTTGAATGGCTCATCACCAAGCTTTGGCGAAGGAAGTAGCTCAGAAAACTACCTATCTGATGTCGGTATGCCCAACAATATTTGGAGCCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

212

Amino Acids

23.65

Weight (kDa)

6.05

Isoelectric Point (pI)

57.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56010 AT1G56010 AT3G12977 AT3G12977
fragaria_vesca	FvH4_3g16040
malus_domestica	MD10G1198400.v1.1
prunus_persica	Prupe.4G143600_v2.0.a1
pyrus_communis	pycom05g19830 pycom10g17110
rosa_chinensis	RchiOBHm_Chr5g0027011
rosa_laevigata	RLG00000032977 RLG00000032981
rosa_multiflora	Rmu_sc0000882.1_g000012
rosa_roxburghii	Rroxscaffold_1G00052480
rosa_rugosa	Rorug05G0096600
rosa_samantha	Rh5AG190000 Rh5BG187600 Rh5CG207400
rosa_wichuraiana	Rw5G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	563
AciI	CCGC	1 cut(s)	168
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	1 cut(s)	256
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	2 cut(s)	182, 563
AgsI	TTSAA	3 cut(s)	83, 216, 544
AhlI	ACTAGT	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	40, 72
AluBI	AGCT	4 cut(s)	35, 192, 561, 579
AluI	AGCT	4 cut(s)	35, 192, 561, 579
Alw21I	GWGCWC	1 cut(s)	37
AlwI	GGATC	1 cut(s)	455
AoxI	GGCC	1 cut(s)	256
AspA2I	CCTAGG	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	86, 95
AsuHPI	GGTGA	2 cut(s)	497, 546
AvaII	GGWCC	2 cut(s)	86, 95
AvrII	CCTAGG	1 cut(s)	91
BaeGI	GKGCMC	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	37
BccI	CCATC	3 cut(s)	226, 248, 511
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	1 cut(s)	26
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	2 cut(s)	92, 372
BisI	GCNGC	1 cut(s)	168
BlnI	CCTAGG	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	169
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	2 cut(s)	86, 95
BmgT120I	GGNCC	2 cut(s)	86, 95
BmiI	GGNNCC	2 cut(s)	88, 626
BmrFI	CCNGG	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	101
BsaJI	CCNNGG	3 cut(s)	12, 25, 91
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 563
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	12, 25, 91
BseLI	CCNNNNNNNGG	2 cut(s)	182, 563
BseMII	CTCAG	5 cut(s)	284, 294, 296, 302, 594
BseSI	GKGCMC	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	176
BsgI	GTGCAG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	258
BsiHKAI	GWGCWC	1 cut(s)	37
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	182, 563
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	37, 315
Bsp143I	GATC	1 cut(s)	460
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	5 cut(s)	283, 295, 295, 301, 593
BspLI	GGNNCC	2 cut(s)	88, 626
BspPI	GGATC	1 cut(s)	455
BssECI	CCNNGG	3 cut(s)	12, 25, 91
BssMI	GATC	1 cut(s)	460
BssT1I	CCWWGG	2 cut(s)	12, 91
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	1 cut(s)	115
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	5 cut(s)	270, 282, 288, 303, 580
BstKTI	GATC	1 cut(s)	463
BstMBI	GATC	1 cut(s)	460
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	315
BstV2I	GAAGAC	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	86, 95
Csp6I	GTAC	1 cut(s)	525
CviAII	CATG	5 cut(s)	64, 68, 181, 325, 471
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	5 cut(s)	270, 282, 288, 303, 580
DpnI	GATC	1 cut(s)	462
DpnII	GATC	1 cut(s)	460
EaeI	YGGCCR	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	12, 91
Eco24I	GRGCYC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	86, 95
Eco53kI	GAGCTC	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	35
EcoO109I	RGGNCCY	2 cut(s)	86, 95
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	2 cut(s)	12, 91
EcoT22I	ATGCAT	1 cut(s)	69
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	2 cut(s)	12, 91
FaeI	CATG	5 cut(s)	67, 71, 184, 328, 474
FaiI	YATR	9 cut(s)	65, 69, 150, 182, 326, 389, 446, 472, 608
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	5 cut(s)	63, 67, 180, 324, 470
Fnu4HI	GCNGC	1 cut(s)	168
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	2 cut(s)	92, 372
GluI	GCNGC	1 cut(s)	168
GsaI	CCCAGC	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	258
Hin1II	CATG	5 cut(s)	67, 71, 184, 328, 474
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	4 cut(s)	236, 286, 299, 502
HphI	GGTGA	2 cut(s)	497, 546
Hpy188I	TCNGA	6 cut(s)	55, 273, 285, 304, 583, 598
Hpy188III	TCNNGA	1 cut(s)	458
HpyAV	CCTTC	2 cut(s)	77, 563
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	2 cut(s)	67, 138
HpyF3I	CTNAG	5 cut(s)	270, 282, 288, 303, 580
Hsp92II	CATG	5 cut(s)	67, 71, 184, 328, 474
Kzo9I	GATC	1 cut(s)	460
LmnI	GCTCC	2 cut(s)	40, 624
LpnPI	CCDG	6 cut(s)	11, 38, 190, 237, 328, 347
MaeI	CTAG	2 cut(s)	92, 372
MaeIII	GTNAC	3 cut(s)	194, 473, 503
MalI	GATC	1 cut(s)	462
MboI	GATC	1 cut(s)	460
MboII	GAAGA	3 cut(s)	10, 102, 134
MhlI	GDGCHC	2 cut(s)	37, 315
MluCI	AATT	3 cut(s)	186, 451, 480
MlyI	GAGTC	4 cut(s)	230, 280, 308, 511
MnlI	CCTC	2 cut(s)	108, 425
Mph1103I	ATGCAT	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
NdeII	GATC	1 cut(s)	460
NlaIII	CATG	5 cut(s)	67, 71, 184, 328, 474
NlaIV	GGNNCC	2 cut(s)	88, 626
NmuCI	GTSAC	2 cut(s)	473, 503
NsiI	ATGCAT	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	563
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	4 cut(s)	230, 280, 307, 510
PpsI	GAGTC	4 cut(s)	230, 280, 307, 510
PpuMI	RGGWCCY	2 cut(s)	86, 95
Psp124BI	GAGCTC	1 cut(s)	37
Psp5II	RGGWCCY	2 cut(s)	86, 95
Psp6I	CCWGG	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	88, 626
PspPI	GGNCC	2 cut(s)	86, 95
PspPPI	RGGWCCY	2 cut(s)	86, 95
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	37
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	460
Sau96I	GGNCC	2 cut(s)	86, 95
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	4 cut(s)	230, 280, 308, 511
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	2 cut(s)	37, 315
SetI	ASST	9 cut(s)	14, 37, 88, 97, 194, 510, 563, 581, 594
SinI	GGWCC	2 cut(s)	86, 95
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	3 cut(s)	186, 451, 480
SsiI	CCGC	1 cut(s)	168
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	2 cut(s)	92, 372
SstI	GAGCTC	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	2 cut(s)	12, 91
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	1 cut(s)	31
TasI	AATT	3 cut(s)	186, 451, 480
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	1 cut(s)	170
TscAI	CASTG	1 cut(s)	367
TseFI	GTSAC	2 cut(s)	473, 503
Tsp45I	GTSAC	2 cut(s)	473, 503
TspDTI	ATGAA	2 cut(s)	137, 459
TspRI	CASTG	1 cut(s)	367
Van91I	CCANNNNNTGG	1 cut(s)	563
VpaK11BI	GGWCC	2 cut(s)	86, 95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmaJI	CCTAGG	1 cut(s)	91
XspI	CTAG	2 cut(s)	92, 372
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.