Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011962

Physical Location & Seq

Genomic Coordinates Forward (+)

8234798 .. 8239256

Gene Structure 4459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G143600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAGCAACATAAGCATGGTGGAGGCAAAGTTGCCACCTGGTTTCAGGTTCCATCCAAGAGATGAGGAGCTTGTGTGCGACTATTTGCTGAAAAAGGTGACTCAGACTGACTCAACCCTTATGATTGAAGTTGACCTCAACAAGTGCGAGCCTTGGGACATTCCTGAAACTGCATGTGTGGGAGGCAAGGAATGGTACTTCTACAGTCAGCGTGATCGTAAATATGCAACAGGACTTAGAACAAACCGTGCAACTGCAACAGGGTATTGGAAGGCCACAGGAAAAGACAGGCCAATCCATCGCAAAGGAAGCCTTGTAGGGATGAGAAAAACCTTGGTCTTCTACCAAGGTAGAGCCCCCAAAGGCAGAAAATCCGACTGGGTCATGCATGAATTTCGGCTTGAAGGTCCCTTTGGTCCGCCTAAAATCTCTTCTCACAAGGAAGATTGGGTTTTATGCAGAGTGTTTTATAAAAACAGAGAAATTGCTGCCAAACCCAGCATGGGAATTAGCTGCTATGATGACACAAGCAATTCTTCTCTGCCTGCATTGATGGATTCTTACATCAGTTTTGATGGCCAGCCTCAGACTCAGCCTCAGCCTCAGCCTCAGCCTCATCATGAGTATGAGCAAGTGCCCTGCTTCTCCATTTTCTCCCAAAGCCAAACCAGCCCAATTTTCTCACACATTGACATCACTGGTGCCCATTTGGAACCAAACATGCCCACCAAGAACAATAACAACAACGCAGCCACATTTGGGGCGCTGCCAAATGTGACCAGTTTTCTTGACCCTTTTTCATGTGACAAAAAGGTGCTAAAAGCTGTTTTGAGTCACCTTACCAAGATGGAAGAAACTAGTTCTTATCCTACTTTGAATGTGAAAGGCTCATCACCACCAAGCTTAGGCGCAGGAAGTAGCTCAGAAAACTACCTATCTGAAGTTGGTATGCCCAACATTTGGAGCCACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

325

Amino Acids

36.49

Weight (kDa)

8.08

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56010 AT1G56010 AT3G12977 AT3G12977
fragaria_vesca	FvH4_3g16040
malus_domestica	MD10G1198400.v1.1
prunus_persica	Prupe.4G143600_v2.0.a1
pyrus_communis	pycom05g19830 pycom10g17110
rosa_chinensis	RchiOBHm_Chr5g0027011
rosa_laevigata	RLG00000032977 RLG00000032981
rosa_multiflora	Rmu_sc0000882.1_g000012
rosa_roxburghii	Rroxscaffold_1G00052480
rosa_rugosa	Rorug05G0096600
rosa_samantha	Rh5AG190000 Rh5BG187600 Rh5CG207400
rosa_wichuraiana	Rw5G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	701
AccB7I	CCANNNNNTGG	1 cut(s)	960
AciI	CCGC	1 cut(s)	419
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	960
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	4 cut(s)	503, 759, 905, 960
AgsI	TTSAA	3 cut(s)	128, 404, 877
AhlI	ACTAGT	1 cut(s)	857
AjnI	CCWGG	1 cut(s)	37
AjuI	GAANNNNNNNTTGG	2 cut(s)	396, 428
AluBI	AGCT	5 cut(s)	70, 513, 824, 903, 921
AluI	AGCT	5 cut(s)	70, 513, 824, 903, 921
AoxI	GGCC	3 cut(s)	273, 290, 577
ApeKI	GCWGC	4 cut(s)	488, 513, 749, 766
ApoI	RAATTY	1 cut(s)	392
AspLEI	GCGC	2 cut(s)	766, 911
AspS9I	GGNCC	2 cut(s)	407, 416
AsuHPI	GGTGA	3 cut(s)	109, 827, 885
AvaII	GGWCC	2 cut(s)	407, 416
BaeGI	GKGCMC	2 cut(s)	639, 706
BalI	TGGCCA	1 cut(s)	579
BanI	GGYRCC	1 cut(s)	701
BanII	GRGCYC	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	331
BbvCI	CCTCAGC	3 cut(s)	597, 603, 609
BbvI	GCAGC	4 cut(s)	475, 500, 753, 761
BccI	CCATC	5 cut(s)	60, 306, 547, 569, 841
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	1 cut(s)	39
BcuI	ACTAGT	1 cut(s)	857
BfaI	CTAG	1 cut(s)	858
BfmI	CTRYAG	1 cut(s)	202
BfoI	RGCGCY	1 cut(s)	767
BisI	GCNGC	4 cut(s)	489, 514, 750, 767
BlsI	GCNGC	4 cut(s)	490, 515, 751, 768
Bme1390I	CCNGG	1 cut(s)	39
Bme18I	GGWCC	2 cut(s)	407, 416
BmgT120I	GGNCC	2 cut(s)	407, 416
BmiI	GGNNCC	5 cut(s)	50, 409, 703, 714, 965
BmrFI	CCNGG	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	1 cut(s)	331
Bpu10I	CCTNAGC	4 cut(s)	597, 603, 609, 904
BsaJI	CCNNGG	3 cut(s)	152, 333, 346
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 59, 89
Bsc4I	CCNNNNNNNGG	4 cut(s)	503, 759, 905, 960
Bse1I	ACTGG	3 cut(s)	383, 703, 780
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	3 cut(s)	152, 333, 346
BseGI	GGATG	2 cut(s)	52, 327
BseLI	CCNNNNNNNGG	4 cut(s)	503, 759, 905, 960
BseMII	CTCAG	7 cut(s)	116, 599, 605, 611, 617, 623, 936
BseNI	ACTGG	3 cut(s)	383, 703, 780
BseRI	GAGGAG	1 cut(s)	80
BseSI	GKGCMC	2 cut(s)	639, 706
BseXI	GCAGC	4 cut(s)	475, 500, 753, 761
BseYI	CCCAGC	1 cut(s)	497
BshFI	GGCC	3 cut(s)	275, 292, 579
BshNI	GGYRCC	1 cut(s)	701
BslFI	GGGAC	2 cut(s)	170, 393
BslI	CCNNNNNNNGG	4 cut(s)	503, 759, 905, 960
BsmFI	GGGAC	2 cut(s)	170, 393
BsnI	GGCC	3 cut(s)	275, 292, 579
Bsp1286I	GDGCHC	3 cut(s)	358, 639, 706
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	3 cut(s)	275, 292, 579
BspCNI	CTCAG	7 cut(s)	115, 598, 604, 610, 616, 622, 935
BspHI	TCATGA	1 cut(s)	619
BspLI	GGNNCC	5 cut(s)	50, 409, 703, 714, 965
BspT107I	GGYRCC	1 cut(s)	701
BsrI	ACTGG	3 cut(s)	383, 703, 780
BssECI	CCNNGG	3 cut(s)	152, 333, 346
BssMI	GATC	1 cut(s)	214
BssT1I	CCWWGG	3 cut(s)	152, 333, 346
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	206, 248
Bst6I	CTCTTC	1 cut(s)	436
BstC8I	GCNNGC	3 cut(s)	149, 546, 581
BstDEI	CTNAG	9 cut(s)	102, 236, 585, 591, 597, 603, 609, 904, 922
BstF5I	GGATG	2 cut(s)	52, 327
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	2 cut(s)	766, 911
BstKTI	GATC	1 cut(s)	217
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 309, 669
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	2 cut(s)	177, 724
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	2 cut(s)	639, 706
BstV1I	GCAGC	4 cut(s)	475, 500, 753, 761
BstV2I	GAAGAC	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	275, 292, 579
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	52, 327
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	3 cut(s)	149, 546, 581
CciI	TCATGA	1 cut(s)	619
CfoI	GCGC	2 cut(s)	766, 911
Cfr13I	GGNCC	2 cut(s)	407, 416
CsiI	ACCWGGT	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	8 cut(s)	16, 174, 385, 389, 502, 620, 721, 801
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	9 cut(s)	102, 236, 585, 591, 597, 603, 609, 904, 922
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
EciI	GGCGGA	1 cut(s)	408
Eco130I	CCWWGG	3 cut(s)	152, 333, 346
Eco24I	GRGCYC	1 cut(s)	358
Eco47I	GGWCC	2 cut(s)	407, 416
Eco57I	CTGAAG	1 cut(s)	960
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	3 cut(s)	152, 333, 346
EcoT22I	ATGCAT	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	3 cut(s)	152, 333, 346
FaeI	CATG	8 cut(s)	19, 177, 388, 392, 505, 623, 724, 804
FalI	AAGNNNNNCTT	4 cut(s)	297, 329, 520, 552
FaqI	GGGAC	2 cut(s)	170, 393
FatI	CATG	8 cut(s)	15, 173, 384, 388, 501, 619, 720, 800
Fnu4HI	GCNGC	4 cut(s)	489, 514, 750, 767
FokI	GGATG	2 cut(s)	39, 334
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	4 cut(s)	489, 514, 750, 767
FspBI	CTAG	1 cut(s)	858
GlaI	GCGC	2 cut(s)	765, 910
GluI	GCNGC	4 cut(s)	489, 514, 750, 767
GsaI	CCCAGC	1 cut(s)	501
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	3 cut(s)	275, 292, 579
HhaI	GCGC	2 cut(s)	766, 911
Hin1II	CATG	8 cut(s)	19, 177, 388, 392, 505, 623, 724, 804
Hin6I	GCGC	2 cut(s)	764, 909
HinP1I	GCGC	2 cut(s)	764, 909
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	901
HinfI	GANTC	5 cut(s)	100, 110, 557, 589, 832
HphI	GGTGA	3 cut(s)	109, 827, 885
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	5 cut(s)	105, 376, 588, 925, 940
Hpy188III	TCNNGA	3 cut(s)	164, 620, 788
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	265, 398
HpyCH4III	ACNGT	2 cut(s)	206, 248
HpyCH4V	TGCA	7 cut(s)	173, 227, 251, 257, 388, 459, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 309, 669
HpyF3I	CTNAG	9 cut(s)	102, 236, 585, 591, 597, 603, 609, 904, 922
Hsp92II	CATG	8 cut(s)	19, 177, 388, 392, 505, 623, 724, 804
HspAI	GCGC	2 cut(s)	764, 909
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	67, 963
Lsp1109I	GCAGC	4 cut(s)	475, 500, 753, 761
MabI	ACCWGGT	1 cut(s)	37
MaeI	CTAG	1 cut(s)	858
MaeIII	GTNAC	4 cut(s)	97, 775, 803, 833
MalI	GATC	1 cut(s)	216
MboI	GATC	1 cut(s)	214
MboII	GAAGA	5 cut(s)	331, 423, 455, 528, 863
MhlI	GDGCHC	3 cut(s)	358, 639, 706
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	5 cut(s)	392, 483, 507, 532, 675
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	4 cut(s)	94, 104, 583, 841
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	9 cut(s)	16, 58, 146, 176, 594, 606, 612, 618, 624
Mox20I	TGGCCA	1 cut(s)	579
Mph1103I	ATGCAT	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	579
MslI	CAYNNNNRTG	2 cut(s)	14, 624
Msp20I	TGGCCA	1 cut(s)	579
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	12, 309, 669
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	8 cut(s)	19, 177, 388, 392, 505, 623, 724, 804
NlaIV	GGNNCC	5 cut(s)	50, 409, 703, 714, 965
NmuCI	GTSAC	4 cut(s)	97, 775, 803, 833
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	2 cut(s)	177, 724
PagI	TCATGA	1 cut(s)	619
PfeI	GAWTC	1 cut(s)	557
PflFI	GACNNNGTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	960
PkrI	GCNGC	4 cut(s)	490, 515, 751, 768
PleI	GAGTC	4 cut(s)	94, 104, 583, 840
PpsI	GAGTC	4 cut(s)	94, 104, 583, 840
PpuMI	RGGWCCY	1 cut(s)	407
PsiI	TTATAA	1 cut(s)	471
Psp5II	RGGWCCY	1 cut(s)	407
Psp6I	CCWGG	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	497
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	5 cut(s)	50, 409, 703, 714, 965
PspPI	GGNCC	2 cut(s)	407, 416
PspPPI	RGGWCCY	1 cut(s)	407
PsyI	GACNNNGTC	1 cut(s)	380
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	2 cut(s)	14, 624
SatI	GCNGC	4 cut(s)	489, 514, 750, 767
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	2 cut(s)	407, 416
SchI	GAGTC	4 cut(s)	94, 104, 583, 841
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	3 cut(s)	358, 639, 706
SexAI	ACCWGGT	1 cut(s)	37
SfcI	CTRYAG	1 cut(s)	202
SinI	GGWCC	2 cut(s)	407, 416
SmiMI	CAYNNNNRTG	2 cut(s)	14, 624
SpeI	ACTAGT	1 cut(s)	857
Sse9I	AATT	5 cut(s)	392, 483, 507, 532, 675
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	1 cut(s)	858
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	3 cut(s)	152, 333, 346
TaaI	ACNGT	2 cut(s)	206, 248
TasI	AATT	5 cut(s)	392, 483, 507, 532, 675
TfiI	GAWTC	1 cut(s)	557
TscAI	CASTG	1 cut(s)	703
TseFI	GTSAC	4 cut(s)	97, 775, 803, 833
TseI	GCWGC	4 cut(s)	488, 513, 749, 766
Tsp45I	GTSAC	4 cut(s)	97, 775, 803, 833
TspDTI	ATGAA	2 cut(s)	405, 789
TspRI	CASTG	1 cut(s)	703
Tth111I	GACNNNGTC	1 cut(s)	380
Van91I	CCANNNNNTGG	1 cut(s)	960
VpaK11BI	GGWCC	2 cut(s)	407, 416
XapI	RAATTY	1 cut(s)	392
XceI	RCATGY	2 cut(s)	177, 724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	499
XspI	CTAG	1 cut(s)	858
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.