Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011962

Physical Location & Seq

Genomic Coordinates Reverse (-)

29636260 .. 29641325

Gene Structure 5066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1198400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAGCAACATAAGCGTGGTGGAGGCAAAGTTGCCACCAGGGTTCAGGTTCCATCCAAGAGATGAAGAGCTTGTGTGTGACTATTTGATGAAGAAGGTGACTCAATCTGACTCAATCCTTATGATTGAAGTTGACCTCAACAAGTCTGAGCCATGGGATATCCCTGAAAGTGCATGTGTGGGAGGGAAAGAATGGTACTTCTATAGTCAGCGTGATCGTAAATATGCAACAGGACTTCGAACAAACCGTGCAACTGCAACAGGGTATTGGAAGGCCACAGGAAAAGATAGGCCGATCCTTCGCAGAGGAAGCCTTGTTGGGATGAGAAAAACCTTGGTCTTCTACCAGGGTCGAGCTCCCAAAGGCAGAAAATCCGATTGGGTCATGCATGAGTTTCGGCTTGAAGGTCCTCCTAAAATCTCTCCTCTCAAGGAAGATTGGGTTTTGTGCAGAGTGTTTTATAAAAACCGAGAGATAGCTGCCAAACCCAGCATGGGAGTTAGCTGTTACGATGACACGAGCACTTTAACTCTGCCTGCCTTGATGGACTCTTACATCAGTTTCGATGGCCAAACTCAGATTCAGACACACACAGAGACTCAACCCCAAGACTATGAGCAAGTGCCCTGCTTCTCCATGTTCTCCCAGAACCAAACCAACCCAATTTTCACACACGTTGACATCACCAGTTCTCAACCAAGCATACCCACCAAGCACAATAATAATACCAACACAACCACATTTGGAGGGTTGCCAAATGTGACCAATTTTCTTGACCCTTTTTCATGTGACAAAAAGGTGCTAAAAGCTGTTTTGAGTCACCTTACCAAGATGGAAAAGTCCATTTATCCTACTTTGGATGGCTCATCACCAAGCTTTGGGGAAGGAAGTAGTTCAGAAAACTACCTATCTGATGTCGGCATGCCCAAGAATATTTGGAGCCACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

317

Amino Acids

35.85

Weight (kDa)

8.11

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 134	5.7e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56010 AT1G56010 AT3G12977 AT3G12977
fragaria_vesca	FvH4_3g16040
malus_domestica	MD10G1198400.v1.1
prunus_persica	Prupe.4G143600_v2.0.a1
pyrus_communis	pycom05g19830 pycom10g17110
rosa_chinensis	RchiOBHm_Chr5g0027011
rosa_laevigata	RLG00000032977 RLG00000032981
rosa_multiflora	Rmu_sc0000882.1_g000012
rosa_roxburghii	Rroxscaffold_1G00052480
rosa_rugosa	Rorug05G0096600
rosa_samantha	Rh5AG190000 Rh5BG187600 Rh5CG207400
rosa_wichuraiana	Rw5G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccB7I	CCANNNNNTGG	1 cut(s)	878
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	568
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	2 cut(s)	494, 878
AflIII	ACRYGT	1 cut(s)	673
AgsI	TTSAA	2 cut(s)	128, 404
AjnI	CCWGG	2 cut(s)	37, 345
AjuI	GAANNNNNNNTTGG	6 cut(s)	361, 393, 564, 596, 650, 682
AluBI	AGCT	6 cut(s)	70, 356, 479, 504, 809, 876
AluI	AGCT	6 cut(s)	70, 356, 479, 504, 809, 876
Alw21I	GWGCWC	2 cut(s)	358, 524
Alw26I	GTCTC	1 cut(s)	590
AlwI	GGATC	1 cut(s)	289
AoxI	GGCC	3 cut(s)	273, 290, 568
ApeKI	GCWGC	1 cut(s)	479
Asp700I	GAANNNNTTC	1 cut(s)	892
AspS9I	GGNCC	1 cut(s)	407
AsuHPI	GGTGA	4 cut(s)	109, 676, 812, 861
AsuII	TTCGAA	1 cut(s)	238
AvaII	GGWCC	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	627
BalI	TGGCCA	1 cut(s)	570
BanII	GRGCYC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	2 cut(s)	358, 524
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	5 cut(s)	60, 538, 560, 826, 854
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	2 cut(s)	39, 347
BcoDI	GTCTC	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	1 cut(s)	480
BlsI	GCNGC	1 cut(s)	481
Bme1390I	CCNGG	2 cut(s)	39, 347
Bme18I	GGWCC	1 cut(s)	407
BmgT120I	GGNCC	1 cut(s)	407
BmiI	GGNNCC	2 cut(s)	50, 941
BmrFI	CCNGG	2 cut(s)	39, 347
BpiI	GAAGAC	1 cut(s)	331
Bpu14I	TTCGAA	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	413
BsaJI	CCNNGG	4 cut(s)	38, 152, 333, 346
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	2 cut(s)	494, 878
Bse1I	ACTGG	1 cut(s)	687
BseBI	CCWGG	2 cut(s)	39, 347
BseDI	CCNNGG	4 cut(s)	38, 152, 333, 346
BseGI	GGATG	3 cut(s)	52, 327, 865
BseLI	CCNNNNNNNGG	2 cut(s)	494, 878
BseMII	CTCAG	2 cut(s)	138, 590
BseNI	ACTGG	1 cut(s)	687
BseRI	GAGGAG	1 cut(s)	414
BseSI	GKGCMC	1 cut(s)	627
BseXI	GCAGC	1 cut(s)	466
BseYI	CCCAGC	1 cut(s)	488
BsgI	GTGCAG	1 cut(s)	469
BshFI	GGCC	3 cut(s)	275, 292, 570
BsiHKAI	GWGCWC	2 cut(s)	358, 524
BslI	CCNNNNNNNGG	2 cut(s)	494, 878
BsmAI	GTCTC	1 cut(s)	590
BsnI	GGCC	3 cut(s)	275, 292, 570
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	3 cut(s)	358, 524, 627
Bsp143I	GATC	2 cut(s)	214, 294
Bsp19I	CCATGG	1 cut(s)	152
BspANI	GGCC	3 cut(s)	275, 292, 570
BspCNI	CTCAG	2 cut(s)	139, 589
BspLI	GGNNCC	2 cut(s)	50, 941
BspPI	GGATC	1 cut(s)	289
BspQI	GCTCTTC	1 cut(s)	60
BspT104I	TTCGAA	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	687
BssECI	CCNNGG	4 cut(s)	38, 152, 333, 346
BssMI	GATC	2 cut(s)	214, 294
BssSI	CACGAG	1 cut(s)	517
BssT1I	CCWWGG	2 cut(s)	152, 333
Bst2BI	CACGAG	1 cut(s)	517
Bst2UI	CCWGG	2 cut(s)	39, 347
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	60
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	537, 923
BstDEI	CTNAG	2 cut(s)	147, 576
BstDSI	CCRYGG	1 cut(s)	152
BstF5I	GGATG	3 cut(s)	52, 327, 865
BstKTI	GATC	2 cut(s)	217, 297
BstMAI	GTCTC	1 cut(s)	590
BstMBI	GATC	2 cut(s)	214, 294
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 309
BstNI	CCWGG	2 cut(s)	39, 347
BstNSI	RCATGY	2 cut(s)	177, 925
BstSCI	CCNGG	2 cut(s)	37, 345
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	627
BstV1I	GCAGC	1 cut(s)	466
BstV2I	GAAGAC	1 cut(s)	331
BsuRI	GGCC	3 cut(s)	275, 292, 570
BtgI	CCRYGG	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	52, 327, 865
Cac8I	GCNNGC	2 cut(s)	537, 923
Cfr13I	GGNCC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	8 cut(s)	153, 174, 385, 389, 493, 637, 786, 922
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	147, 576
DpnI	GATC	2 cut(s)	216, 296
DpnII	GATC	2 cut(s)	214, 294
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Ecl136II	GAGCTC	1 cut(s)	356
Eco130I	CCWWGG	2 cut(s)	152, 333
Eco24I	GRGCYC	1 cut(s)	358
Eco32I	GATATC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	407
Eco53kI	GAGCTC	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	37, 345
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	152, 333
EcoT22I	ATGCAT	1 cut(s)	390
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	2 cut(s)	152, 333
FaeI	CATG	8 cut(s)	156, 177, 388, 392, 496, 640, 789, 925
FatI	CATG	8 cut(s)	152, 173, 384, 388, 492, 636, 785, 921
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	3 cut(s)	39, 334, 872
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	1 cut(s)	480
GluI	GCNGC	1 cut(s)	480
GsaI	CCCAGC	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	275, 292, 570
Hin1II	CATG	8 cut(s)	156, 177, 388, 392, 496, 640, 789, 925
HincII	GTYRAC	2 cut(s)	133, 679
HindII	GTYRAC	2 cut(s)	133, 679
HindIII	AAGCTT	1 cut(s)	874
HinfI	GANTC	6 cut(s)	100, 110, 548, 580, 598, 817
HphI	GGTGA	4 cut(s)	109, 676, 812, 861
Hpy166II	GTNNAC	2 cut(s)	133, 679
Hpy188I	TCNGA	7 cut(s)	109, 148, 376, 579, 585, 898, 913
Hpy188III	TCNNGA	1 cut(s)	773
Hpy8I	GTNNAC	2 cut(s)	133, 679
HpyAV	CCTTC	5 cut(s)	88, 265, 308, 398, 878
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	6 cut(s)	173, 227, 251, 257, 388, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 309
HpyF3I	CTNAG	2 cut(s)	147, 576
HpySE526I	ACGT	1 cut(s)	675
Hsp92II	CATG	8 cut(s)	156, 177, 388, 392, 496, 640, 789, 925
Kzo9I	GATC	2 cut(s)	214, 294
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	361, 939
Lsp1109I	GCAGC	1 cut(s)	466
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	6 cut(s)	77, 97, 506, 760, 788, 818
MalI	GATC	2 cut(s)	216, 296
MboI	GATC	2 cut(s)	214, 294
MboII	GAAGA	4 cut(s)	77, 103, 331, 446
MhlI	GDGCHC	3 cut(s)	358, 524, 627
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	2 cut(s)	663, 766
MluNI	TGGCCA	1 cut(s)	570
MlyI	GAGTC	5 cut(s)	94, 104, 542, 592, 826
MnlI	CCTC	7 cut(s)	16, 146, 176, 299, 420, 435, 740
Mox20I	TGGCCA	1 cut(s)	570
Mph1103I	ATGCAT	1 cut(s)	390
MroXI	GAANNNNTTC	1 cut(s)	892
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	1 cut(s)	527
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	570
MspR9I	CCNGG	2 cut(s)	39, 347
MvaI	CCWGG	2 cut(s)	39, 347
MwoI	GCNNNNNNNGC	2 cut(s)	12, 309
NcoI	CCATGG	1 cut(s)	152
NdeII	GATC	2 cut(s)	214, 294
NlaIII	CATG	8 cut(s)	156, 177, 388, 392, 496, 640, 789, 925
NlaIV	GGNNCC	2 cut(s)	50, 941
NmuCI	GTSAC	5 cut(s)	77, 97, 760, 788, 818
NsiI	ATGCAT	1 cut(s)	390
NspI	RCATGY	2 cut(s)	177, 925
NspV	TTCGAA	1 cut(s)	238
PaeI	GCATGC	1 cut(s)	925
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	892
PfeI	GAWTC	1 cut(s)	580
PflMI	CCANNNNNTGG	1 cut(s)	878
PkrI	GCNGC	1 cut(s)	481
PleI	GAGTC	5 cut(s)	94, 104, 542, 592, 825
PpsI	GAGTC	5 cut(s)	94, 104, 542, 592, 825
PpuMI	RGGWCCY	1 cut(s)	407
PsiI	TTATAA	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	358
Psp5II	RGGWCCY	1 cut(s)	407
Psp6I	CCWGG	2 cut(s)	37, 345
PspFI	CCCAGC	1 cut(s)	488
PspGI	CCWGG	2 cut(s)	37, 345
PspN4I	GGNNCC	2 cut(s)	50, 941
PspPI	GGNCC	1 cut(s)	407
PspPPI	RGGWCCY	1 cut(s)	407
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	14
SacI	GAGCTC	1 cut(s)	358
SapI	GCTCTTC	1 cut(s)	60
SaqAI	TTAA	1 cut(s)	527
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	2 cut(s)	214, 294
Sau96I	GGNCC	1 cut(s)	407
SchI	GAGTC	5 cut(s)	94, 104, 542, 592, 826
ScrFI	CCNGG	2 cut(s)	39, 347
SduI	GDGCHC	3 cut(s)	358, 524, 627
SfcI	CTRYAG	1 cut(s)	202
SfuI	TTCGAA	1 cut(s)	238
SinI	GGWCC	1 cut(s)	407
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
SphI	GCATGC	1 cut(s)	925
Sse9I	AATT	2 cut(s)	663, 766
SspI	AATATT	1 cut(s)	934
SstI	GAGCTC	1 cut(s)	358
StyD4I	CCNGG	2 cut(s)	37, 345
StyI	CCWWGG	2 cut(s)	152, 333
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	3 cut(s)	238, 352, 564
TasI	AATT	2 cut(s)	663, 766
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	1 cut(s)	527
Tru9I	TTAA	1 cut(s)	527
TseFI	GTSAC	5 cut(s)	77, 97, 760, 788, 818
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	5 cut(s)	77, 97, 760, 788, 818
TspDTI	ATGAA	3 cut(s)	78, 104, 774
Van91I	CCANNNNNTGG	1 cut(s)	878
VpaK11BI	GGWCC	1 cut(s)	407
XceI	RCATGY	2 cut(s)	177, 925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmnI	GAANNNNTTC	1 cut(s)	892
Zsp2I	ATGCAT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.