Rh5CG207400
NAC Family

NAC domain-containing protein 21

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
20911075 .. 20933272
22198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG207400.1

Sequence Viewer

Length: 1140 bp
ATGAGCAACATAAGCATGGTGGAGGCAAAGTTGCCCCCTGGTTTTAGGTTCCATCCCAGAGATGAAGAGCTGGTCTGTGATTATCTGATGAAGAAGGTGACTCACTCCAACTCCACTCTCATGATCGAAGTCGACCTCAACAAGTGTGAGCCTTGGGACATTCCTGAAAGTGCATGTGTCGGAGGAAAGGAATGGTATTTCTACAGTCAGCGTGATCGGAAATATGCGACGGGGCTTCGAACAAACCGAGCAACTGCAACTGGGTATTGGAAGGCCACCGGAAAAGACAGGCCAATCTTTCGCAAAGGAACAACCCTAGTGGGTATGAGGAAAACCTTGGTGTTCTACCAGGGTAGGGCTCCCAAAGGCAGAAAATCCGACTGGGTGATGCATGAGTTCCGGCTTGAAGATCCCTTTGGTTCTCCCGAAATATCTTCACTCAAGGAAGATTGGGTTCTATGCAGGGTGTTTTACAAAAACAGAGAACTGATTGCTGCCAAACCCAGCATGGGATCGTCGATTAGCTGCTATGACGATGATACAGGCTCTTCGTCTCATCAGCTTCCAGCTCTGATGGACTCTTACATCAGCTTCGATGGACAAACTCATCAACAGCAACAGCAACATCACCATGATTATGAGTATCATCATCATCAGCAAGTGCCCTGCTTCTCCATTGACACACTTTTCTCTCAAAACCAAGTGACTATCAACCCAATTTTCACCACTCAAAACAGCAACATTATGGAACAGAACGTACCCTCCACCGGCTGTGGCCAGTCGTCGAATGCGGCGACAACTACATTCCTTGACACTGCTAATTTTTCATGTGACAATAGGAAGGTACTGAAGGCTGTTTTGAGTCAGCTTACCAAGATGGAAAGCAGCTGCTACCCTAGCACACCGTCGTCGGTCTTGAAAGGCTCATCACCACAAAGCTTCGGAGGAGAAGCTGCTGGAAGTAGTTCGGATAACTACCTGTCTGATCATCAAGTTGGAGACCAAGTGAAGCCAGTACTTGACCTGGTGAATCCTCAACGTAAGGGACCTTGGGGGGCTTTACCTCCAATTCCGGAAAACAATGCTCTCGTTGTTAACAATCAAAGGATGGGACGGCACGTATCTGAGGGTTGTCACTAG

Protein Analysis

379

Amino Acids

42.53

Weight (kDa)

6.91

Isoelectric Point (pI)

46.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 12 - 135 1.4e-43 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011962)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 132
AccIII TCCGGA 1 cut(s) 1072
AciI CCGC 1 cut(s) 791
AclWI GGATC 2 cut(s) 404, 520
AcoI YGGCCR 1 cut(s) 775
AcuI CTGAAG 1 cut(s) 869
AfaI GTAC 3 cut(s) 759, 846, 1017
AfiI CCNNNNNNNGG 3 cut(s) 355, 509, 767
AgsI TTSAA 2 cut(s) 407, 919
AjnI CCWGG 3 cut(s) 37, 348, 1023
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AloI GAACNNNNNNTCC 2 cut(s) 746, 778
AluBI AGCT 9 cut(s) 70, 525, 562, 569, 591, 868, 888, 939, 953
AluI AGCT 9 cut(s) 70, 525, 562, 569, 591, 868, 888, 939, 953
Alw26I GTCTC 2 cut(s) 558, 993
AlwI GGATC 2 cut(s) 404, 520
Aor13HI TCCGGA 1 cut(s) 1072
AoxI GGCC 3 cut(s) 273, 290, 775
ApeKI GCWGC 5 cut(s) 494, 525, 885, 888, 953
Asp700I GAANNNNTTC 1 cut(s) 964
AspS9I GGNCC 1 cut(s) 1046
AsuHPI GGTGA 6 cut(s) 109, 397, 620, 715, 921, 1039
AsuII TTCGAA 1 cut(s) 238
AvaII GGWCC 1 cut(s) 1046
BaeGI GKGCMC 1 cut(s) 666
BalI TGGCCA 1 cut(s) 777
BanII GRGCYC 1 cut(s) 361
BbvI GCAGC 5 cut(s) 481, 512, 875, 897, 940
BccI CCATC 5 cut(s) 60, 568, 590, 871, 1102
BceAI ACGGC 1 cut(s) 1130
BciT130I CCWGG 3 cut(s) 39, 350, 1025
BclI TGATCA 1 cut(s) 985
BcoDI GTCTC 2 cut(s) 558, 993
BfaI CTAG 3 cut(s) 317, 897, 1138
BfmI CTRYAG 1 cut(s) 202
BisI GCNGC 6 cut(s) 495, 526, 792, 886, 889, 954
BlsI GCNGC 6 cut(s) 496, 527, 793, 887, 890, 955
BmcAI AGTACT 1 cut(s) 1017
Bme1390I CCNGG 3 cut(s) 39, 350, 1025
Bme18I GGWCC 1 cut(s) 1046
BmgT120I GGNCC 1 cut(s) 1046
BmiI GGNNCC 3 cut(s) 50, 360, 1047
BmrFI CCNGG 3 cut(s) 39, 350, 1025
BmrI ACTGGG 2 cut(s) 270, 391
BmsI GCATC 1 cut(s) 378
BmuI ACTGGG 2 cut(s) 270, 391
Bpu14I TTCGAA 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 425
BsaAI YACGTR 1 cut(s) 1120
BsaI GGTCTC 1 cut(s) 993
BsaJI CCNNGG 5 cut(s) 37, 152, 336, 349, 1049
BsaWI WCCGGW 2 cut(s) 278, 1072
BsaXI ACNNNNNCTCC 8 cut(s) 14, 44, 95, 125, 746, 776, 990, 1020
Bsc4I CCNNNNNNNGG 3 cut(s) 355, 509, 767
Bse118I RCCGGY 1 cut(s) 767
Bse1I ACTGG 4 cut(s) 265, 386, 778, 1013
BseAI TCCGGA 1 cut(s) 1072
BseBI CCWGG 3 cut(s) 39, 350, 1025
BseDI CCNNGG 5 cut(s) 37, 152, 336, 349, 1049
BseGI GGATG 2 cut(s) 52, 1113
BseLI CCNNNNNNNGG 3 cut(s) 355, 509, 767
BseMII CTCAG 1 cut(s) 1116
BseNI ACTGG 4 cut(s) 265, 386, 778, 1013
BseRI GAGGAG 1 cut(s) 960
BseSI GKGCMC 1 cut(s) 666
BseXI GCAGC 5 cut(s) 481, 512, 875, 897, 940
BseYI CCCAGC 1 cut(s) 503
BshFI GGCC 3 cut(s) 275, 292, 777
BsiSI CCGG 4 cut(s) 279, 400, 768, 1073
BslFI GGGAC 3 cut(s) 170, 1059, 1125
BslI CCNNNNNNNGG 3 cut(s) 355, 509, 767
BsmAI GTCTC 2 cut(s) 558, 993
BsmBI CGTCTC 1 cut(s) 558
BsmFI GGGAC 3 cut(s) 170, 1059, 1125
BsmI GAATGC 1 cut(s) 793
BsnI GGCC 3 cut(s) 275, 292, 777
Bso31I GGTCTC 1 cut(s) 993
Bsp119I TTCGAA 1 cut(s) 238
Bsp1286I GDGCHC 2 cut(s) 361, 666
Bsp13I TCCGGA 1 cut(s) 1072
Bsp143I GATC 5 cut(s) 123, 214, 409, 512, 985
BspACI CCGC 1 cut(s) 791
BspANI GGCC 3 cut(s) 275, 292, 777
BspCNI CTCAG 1 cut(s) 1117
BspEI TCCGGA 1 cut(s) 1072
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 3 cut(s) 50, 360, 1047
BspPI GGATC 2 cut(s) 404, 520
BspQI GCTCTTC 2 cut(s) 60, 553
BspT104I TTCGAA 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 993
BsrFI RCCGGY 1 cut(s) 767
BsrI ACTGG 4 cut(s) 265, 386, 778, 1013
BssAI RCCGGY 1 cut(s) 767
BssECI CCNNGG 5 cut(s) 37, 152, 336, 349, 1049
BssMI GATC 5 cut(s) 123, 214, 409, 512, 985
BssT1I CCWWGG 3 cut(s) 152, 336, 1049
Bst2UI CCWGG 3 cut(s) 39, 350, 1025
Bst4CI ACNGT 2 cut(s) 206, 906
Bst6I CTCTTC 2 cut(s) 60, 553
BstBAI YACGTR 1 cut(s) 1120
BstBI TTCGAA 1 cut(s) 238
BstDEI CTNAG 1 cut(s) 1125
BstF5I GGATG 2 cut(s) 52, 1113
BstKTI GATC 5 cut(s) 126, 217, 412, 515, 988
BstMAI GTCTC 2 cut(s) 558, 993
BstMBI GATC 5 cut(s) 123, 214, 409, 512, 985
BstMWI GCNNNNNNNGC 2 cut(s) 12, 897
BstNI CCWGG 3 cut(s) 39, 350, 1025
BstNSI RCATGY 1 cut(s) 177
BstSCI CCNGG 3 cut(s) 37, 348, 1023
BstSFI CTRYAG 1 cut(s) 202
BstSLI GKGCMC 1 cut(s) 666
BstV1I GCAGC 5 cut(s) 481, 512, 875, 897, 940
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 3 cut(s) 275, 292, 777
BtsCI GGATG 2 cut(s) 52, 1113
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 1 cut(s) 813
CciI TCATGA 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 767
Cfr13I GGNCC 1 cut(s) 1046
CsiI ACCWGGT 1 cut(s) 1023
Csp6I GTAC 3 cut(s) 758, 845, 1016
CspCI CAANNNNNGTGG 2 cut(s) 300, 335
CviAII CATG 7 cut(s) 16, 121, 174, 392, 508, 632, 828
CviQI GTAC 3 cut(s) 758, 845, 1016
DdeI CTNAG 1 cut(s) 1125
DpnI GATC 5 cut(s) 125, 216, 411, 514, 987
DpnII GATC 5 cut(s) 123, 214, 409, 512, 985
EaeI YGGCCR 1 cut(s) 775
Eam1104I CTCTTC 2 cut(s) 60, 553
EarI CTCTTC 2 cut(s) 60, 553
Eco130I CCWWGG 3 cut(s) 152, 336, 1049
Eco24I GRGCYC 1 cut(s) 361
Eco31I GGTCTC 1 cut(s) 993
Eco47I GGWCC 1 cut(s) 1046
Eco57I CTGAAG 1 cut(s) 869
EcoO109I RGGNCCY 1 cut(s) 1046
EcoRII CCWGG 3 cut(s) 37, 348, 1023
EcoT14I CCWWGG 3 cut(s) 152, 336, 1049
EcoT22I ATGCAT 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 361
ErhI CCWWGG 3 cut(s) 152, 336, 1049
Esp3I CGTCTC 1 cut(s) 558
FaeI CATG 7 cut(s) 19, 124, 177, 395, 511, 635, 831
FaqI GGGAC 3 cut(s) 170, 1059, 1125
FatI CATG 7 cut(s) 15, 120, 173, 391, 507, 631, 827
FbaI TGATCA 1 cut(s) 985
FblI GTMKAC 1 cut(s) 132
Fnu4HI GCNGC 6 cut(s) 495, 526, 792, 886, 889, 954
FokI GGATG 2 cut(s) 39, 1120
FriOI GRGCYC 1 cut(s) 361
Fsp4HI GCNGC 6 cut(s) 495, 526, 792, 886, 889, 954
FspBI CTAG 3 cut(s) 317, 897, 1138
GluI GCNGC 6 cut(s) 495, 526, 792, 886, 889, 954
GsaI CCCAGC 1 cut(s) 507
HaeIII GGCC 3 cut(s) 275, 292, 777
HapII CCGG 4 cut(s) 279, 400, 768, 1073
Hin1II CATG 7 cut(s) 19, 124, 177, 395, 511, 635, 831
HincII GTYRAC 2 cut(s) 133, 1096
HindII GTYRAC 2 cut(s) 133, 1096
HindIII AAGCTT 1 cut(s) 937
HinfI GANTC 4 cut(s) 100, 578, 862, 1030
HpaI GTTAAC 1 cut(s) 1096
HpaII CCGG 4 cut(s) 279, 400, 768, 1073
HphI GGTGA 6 cut(s) 109, 397, 620, 715, 921, 1039
Hpy166II GTNNAC 2 cut(s) 133, 1096
Hpy188I TCNGA 9 cut(s) 87, 182, 219, 379, 573, 944, 970, 985, 1126
Hpy188III TCNNGA 5 cut(s) 121, 164, 425, 916, 1073
Hpy8I GTNNAC 2 cut(s) 133, 1096
Hpy99I CGWCG 5 cut(s) 232, 520, 787, 910, 913
HpyAV CCTTC 4 cut(s) 88, 265, 835, 844
HpyCH4III ACNGT 2 cut(s) 206, 906
HpyCH4IV ACGT 3 cut(s) 756, 1039, 1119
HpyCH4V TGCA 4 cut(s) 173, 257, 391, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 897
HpyF3I CTNAG 1 cut(s) 1125
HpySE526I ACGT 3 cut(s) 756, 1039, 1119
Hsp92II CATG 7 cut(s) 19, 124, 177, 395, 511, 635, 831
Kpn2I TCCGGA 1 cut(s) 1072
Ksp22I TGATCA 1 cut(s) 985
KspAI GTTAAC 1 cut(s) 1096
Kzo9I GATC 5 cut(s) 123, 214, 409, 512, 985
LguI GCTCTTC 2 cut(s) 60, 553
LmnI GCTCC 1 cut(s) 364
Lsp1109I GCAGC 5 cut(s) 481, 512, 875, 897, 940
LweI GCATC 1 cut(s) 378
MabI ACCWGGT 1 cut(s) 1023
MaeI CTAG 3 cut(s) 317, 897, 1138
MaeII ACGT 3 cut(s) 756, 1039, 1119
MaeIII GTNAC 4 cut(s) 97, 703, 830, 1133
MalI GATC 5 cut(s) 125, 216, 411, 514, 987
MboI GATC 5 cut(s) 123, 214, 409, 512, 985
MboII GAAGA 6 cut(s) 77, 103, 419, 426, 458, 540
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 2 cut(s) 361, 666
MlsI TGGCCA 1 cut(s) 777
MluCI AATT 3 cut(s) 717, 820, 1068
MluNI TGGCCA 1 cut(s) 777
MlyI GAGTC 3 cut(s) 94, 572, 871
MmeI TCCRAC 4 cut(s) 132, 160, 402, 976
MnlI CCTC 9 cut(s) 16, 146, 176, 321, 772, 938, 1044, 1074, 1120
Mox20I TGGCCA 1 cut(s) 777
Mph1103I ATGCAT 1 cut(s) 393
MroI TCCGGA 1 cut(s) 1072
MroXI GAANNNNTTC 1 cut(s) 964
MscI TGGCCA 1 cut(s) 777
MseI TTAA 1 cut(s) 1095
MslI CAYNNNNRTG 4 cut(s) 14, 119, 630, 636
Msp20I TGGCCA 1 cut(s) 777
MspA1I CMGCKG 1 cut(s) 888
MspI CCGG 4 cut(s) 279, 400, 768, 1073
MspR9I CCNGG 3 cut(s) 39, 350, 1025
Mva1269I GAATGC 1 cut(s) 793
MvaI CCWGG 3 cut(s) 39, 350, 1025
MwoI GCNNNNNNNGC 2 cut(s) 12, 897
NdeII GATC 5 cut(s) 123, 214, 409, 512, 985
NlaIII CATG 7 cut(s) 19, 124, 177, 395, 511, 635, 831
NlaIV GGNNCC 3 cut(s) 50, 360, 1047
NmuCI GTSAC 4 cut(s) 97, 703, 830, 1133
NsiI ATGCAT 1 cut(s) 393
NspI RCATGY 1 cut(s) 177
NspV TTCGAA 1 cut(s) 238
PagI TCATGA 1 cut(s) 120
PciSI GCTCTTC 2 cut(s) 60, 553
PcsI WCGNNNNNNNCGW 2 cut(s) 244, 791
PctI GAATGC 1 cut(s) 793
PdmI GAANNNNTTC 1 cut(s) 964
PfeI GAWTC 1 cut(s) 1030
PkrI GCNGC 6 cut(s) 496, 527, 793, 887, 890, 955
PleI GAGTC 3 cut(s) 94, 572, 870
PpsI GAGTC 3 cut(s) 94, 572, 870
Ppu21I YACGTR 1 cut(s) 1120
PpuMI RGGWCCY 1 cut(s) 1046
Psp5II RGGWCCY 1 cut(s) 1046
Psp6I CCWGG 3 cut(s) 37, 348, 1023
PspFI CCCAGC 1 cut(s) 503
PspGI CCWGG 3 cut(s) 37, 348, 1023
PspN4I GGNNCC 3 cut(s) 50, 360, 1047
PspPI GGNCC 1 cut(s) 1046
PspPPI RGGWCCY 1 cut(s) 1046
PsrI GAACNNNNNNTAC 2 cut(s) 741, 773
PsuI RGATCY 1 cut(s) 409
PvuII CAGCTG 1 cut(s) 888
RsaI GTAC 3 cut(s) 759, 846, 1017
RsaNI GTAC 3 cut(s) 758, 845, 1016
RseI CAYNNNNRTG 4 cut(s) 14, 119, 630, 636
SalI GTCGAC 1 cut(s) 131
SapI GCTCTTC 2 cut(s) 60, 553
SaqAI TTAA 1 cut(s) 1095
SatI GCNGC 6 cut(s) 495, 526, 792, 886, 889, 954
Sau3AI GATC 5 cut(s) 123, 214, 409, 512, 985
Sau96I GGNCC 1 cut(s) 1046
ScaI AGTACT 1 cut(s) 1017
SchI GAGTC 3 cut(s) 94, 572, 871
ScrFI CCNGG 3 cut(s) 39, 350, 1025
SduI GDGCHC 2 cut(s) 361, 666
SexAI ACCWGGT 1 cut(s) 1023
SfaNI GCATC 1 cut(s) 378
SfcI CTRYAG 1 cut(s) 202
SfuI TTCGAA 1 cut(s) 238
SinI GGWCC 1 cut(s) 1046
SmiMI CAYNNNNRTG 4 cut(s) 14, 119, 630, 636
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 3 cut(s) 717, 820, 1068
SsiI CCGC 1 cut(s) 791
SspMI CTAG 3 cut(s) 317, 897, 1138
StyD4I CCNGG 3 cut(s) 37, 348, 1023
StyI CCWWGG 3 cut(s) 152, 336, 1049
TaaI ACNGT 2 cut(s) 206, 906
TaiI ACGT 3 cut(s) 759, 1042, 1122
TaqI TCGA 6 cut(s) 126, 132, 238, 518, 594, 785
TaqII GACCGA 1 cut(s) 901
TasI AATT 3 cut(s) 717, 820, 1068
TatI WGTACW 1 cut(s) 1015
TauI GCSGC 1 cut(s) 794
TfiI GAWTC 1 cut(s) 1030
Tru1I TTAA 1 cut(s) 1095
Tru9I TTAA 1 cut(s) 1095
TscAI CASTG 1 cut(s) 820
TseFI GTSAC 4 cut(s) 97, 703, 830, 1133
TseI GCWGC 5 cut(s) 494, 525, 885, 888, 953
Tsp45I GTSAC 4 cut(s) 97, 703, 830, 1133
TspDTI ATGAA 3 cut(s) 78, 104, 816
TspRI CASTG 1 cut(s) 820
VpaK11BI GGWCC 1 cut(s) 1046
XceI RCATGY 1 cut(s) 177
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmiI GTMKAC 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 964
XspI CTAG 3 cut(s) 317, 897, 1138
ZrmI AGTACT 1 cut(s) 1017
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.