Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0011962

Physical Location & Seq

Genomic Coordinates Reverse (-)

73254853 .. 73259900

Gene Structure 5048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00052480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGAGCAACATAAGCATGGTGGAGGCAAAGTTGCCCCCTGGTTTTAGGTTCCATCCCAAAGATGAAGAGCTGGTCTGTGATTATCTGATGAAGAAGGTGACTCACTCCGACTCCACTCTCATGATCGAAGTCGACCTCAACAAGTGTGAGCCTTGGGACATTCCTGAAAGTGCATGTGTCGGAAGAAAGGAATGGTATTTCTACAGTCAGCGTGATCGGAAATATGCGACGGGGCTTCGAACAAATCGAGCAACCGCAACTGGGTATTGGAAGGCCACCGGAAAAGACAGGCCAATCTTTCGCAAAGGAACAACCCTAGTGGGTATGAGGAAAACCTTGGTGTTCTACCAGGGTAGGGCCCCCAAAGGCAGAAAATCCGACTGGGTGATGCATGAGTTCCGGCTTGAAGATCCCTCTGGTTCTCCCAAAATATCTTCACTCAAGGAAGATTGGGTTCTATGCAGAGTGTTTTACAAAAACAGAGAACTAATTGCTGCCAAACCCAGCATGGGATCGTCGCTTAGCTGCTATGACGATGATACCGGCTCTTCGTCTCATCAGCTGCCAGCTCTGATGGACTCTTATATCAGCTTCGATGGCCAAACTCATCAACAGCAACAGCAACATCACCATGATAATGAGTATCATCATCATCATCAGCAAGTGCCCTGCTTCTCCATTGATTCACTTCTCTCTCAAAACCAAGTGCCTTCCAACCCAATTTTCACCACTCATTACAGCAACATTATGGAACAGAACGTACCCTCCTCCGGCTGTGGCCAGTTGTCGAATGCGGCGACAACTACATTCCTTGACACTGCTAATTTTTCATGTGACAATAGGAAGGTACTGAAAGCTGTTTTGAGTCAGCTTACCAAGATGGAAAGCAGCTGCTACCCTAACACACCGTCGTCGGTCTTGAAAGGCTCATCACCACAAAGCTTCGGAGGAGAAGCTGCTGGAAGTAGTTCGGATAACTACCTGTCTGATCATCAAGTTGGTATGCCCAATGTTTGGAGTCACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010033 GO:0010072 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048367 GO:0048507 GO:0048508 GO:0048527 GO:0048528 GO:0048532 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0090421 GO:0090696 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

342

Amino Acids

38.6

Weight (kDa)

7.23

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	12 - 135	1e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011962)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56010 AT1G56010 AT3G12977 AT3G12977
fragaria_vesca	FvH4_3g16040
malus_domestica	MD10G1198400.v1.1
prunus_persica	Prupe.4G143600_v2.0.a1
pyrus_communis	pycom05g19830 pycom10g17110
rosa_chinensis	RchiOBHm_Chr5g0027011
rosa_laevigata	RLG00000032977 RLG00000032981
rosa_multiflora	Rmu_sc0000882.1_g000012
rosa_roxburghii	Rroxscaffold_1G00052480
rosa_rugosa	Rorug05G0096600
rosa_samantha	Rh5AG190000 Rh5BG187600 Rh5CG207400
rosa_wichuraiana	Rw5G017300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1014
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	2 cut(s)	255, 794
AclWI	GGATC	2 cut(s)	404, 520
AcoI	YGGCCR	2 cut(s)	598, 778
AfaI	GTAC	2 cut(s)	762, 849
AfiI	CCNNNNNNNGG	5 cut(s)	261, 355, 509, 770, 1014
AgsI	TTSAA	2 cut(s)	407, 922
AjnI	CCWGG	2 cut(s)	37, 348
AjuI	GAANNNNNNNTTGG	2 cut(s)	707, 739
AloI	GAACNNNNNNTCC	2 cut(s)	749, 781
Alw26I	GTCTC	1 cut(s)	558
AlwI	GGATC	2 cut(s)	404, 520
AoxI	GGCC	5 cut(s)	273, 290, 357, 598, 778
ApaI	GGGCCC	1 cut(s)	361
ApeKI	GCWGC	6 cut(s)	494, 525, 562, 888, 891, 956
Asp700I	GAANNNNTTC	1 cut(s)	967
AspS9I	GGNCC	2 cut(s)	357, 358
AsuHPI	GGTGA	5 cut(s)	109, 397, 620, 718, 924
AsuII	TTCGAA	1 cut(s)	238
BaeGI	GKGCMC	2 cut(s)	361, 669
BalI	TGGCCA	2 cut(s)	600, 780
BanII	GRGCYC	1 cut(s)	361
BbvI	GCAGC	6 cut(s)	481, 512, 549, 878, 900, 943
BccI	CCATC	4 cut(s)	60, 568, 590, 874
BciT130I	CCWGG	2 cut(s)	39, 350
BclI	TGATCA	1 cut(s)	988
BcoDI	GTCTC	1 cut(s)	558
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	202
BisI	GCNGC	7 cut(s)	495, 526, 563, 795, 889, 892, 957
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	7 cut(s)	496, 527, 564, 796, 890, 893, 958
Bme1390I	CCNGG	2 cut(s)	39, 350
BmgT120I	GGNCC	2 cut(s)	357, 358
BmiI	GGNNCC	3 cut(s)	50, 359, 360
BmrFI	CCNGG	2 cut(s)	39, 350
BmrI	ACTGGG	2 cut(s)	270, 391
BmsI	GCATC	1 cut(s)	378
BmuI	ACTGGG	2 cut(s)	270, 391
Bpu1102I	GCTNAGC	1 cut(s)	521
Bpu14I	TTCGAA	1 cut(s)	238
BpuEI	CTTGAG	1 cut(s)	425
BsaJI	CCNNGG	4 cut(s)	37, 152, 336, 349
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 95, 125, 749, 779
Bsc4I	CCNNNNNNNGG	5 cut(s)	261, 355, 509, 770, 1014
Bse118I	RCCGGY	1 cut(s)	542
Bse1I	ACTGG	3 cut(s)	265, 386, 781
BseBI	CCWGG	2 cut(s)	39, 350
BseDI	CCNNGG	4 cut(s)	37, 152, 336, 349
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	5 cut(s)	261, 355, 509, 770, 1014
BseNI	ACTGG	3 cut(s)	265, 386, 781
BseRI	GAGGAG	2 cut(s)	757, 963
BseSI	GKGCMC	2 cut(s)	361, 669
BseXI	GCAGC	6 cut(s)	481, 512, 549, 878, 900, 943
BseYI	CCCAGC	1 cut(s)	503
BshFI	GGCC	5 cut(s)	275, 292, 359, 600, 780
BsiSI	CCGG	4 cut(s)	279, 400, 543, 771
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	5 cut(s)	261, 355, 509, 770, 1014
BsmAI	GTCTC	1 cut(s)	558
BsmBI	CGTCTC	1 cut(s)	558
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	5 cut(s)	275, 292, 359, 600, 780
Bsp119I	TTCGAA	1 cut(s)	238
Bsp120I	GGGCCC	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	361, 669
Bsp143I	GATC	5 cut(s)	123, 214, 409, 512, 988
Bsp1720I	GCTNAGC	1 cut(s)	521
BspACI	CCGC	2 cut(s)	255, 794
BspANI	GGCC	5 cut(s)	275, 292, 359, 600, 780
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	50, 359, 360
BspPI	GGATC	2 cut(s)	404, 520
BspQI	GCTCTTC	2 cut(s)	60, 553
BspT104I	TTCGAA	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	542
BsrI	ACTGG	3 cut(s)	265, 386, 781
BssAI	RCCGGY	1 cut(s)	542
BssECI	CCNNGG	4 cut(s)	37, 152, 336, 349
BssMI	GATC	5 cut(s)	123, 214, 409, 512, 988
BssT1I	CCWWGG	2 cut(s)	152, 336
Bst2UI	CCWGG	2 cut(s)	39, 350
Bst4CI	ACNGT	2 cut(s)	206, 909
Bst6I	CTCTTC	2 cut(s)	60, 553
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	1 cut(s)	521
BstF5I	GGATG	1 cut(s)	52
BstKTI	GATC	5 cut(s)	126, 217, 412, 515, 991
BstMAI	GTCTC	1 cut(s)	558
BstMBI	GATC	5 cut(s)	123, 214, 409, 512, 988
BstMWI	GCNNNNNNNGC	2 cut(s)	12, 597
BstNI	CCWGG	2 cut(s)	39, 350
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	2 cut(s)	37, 348
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	2 cut(s)	361, 669
BstV1I	GCAGC	6 cut(s)	481, 512, 549, 878, 900, 943
BstX2I	RGATCY	1 cut(s)	409
BstYI	RGATCY	1 cut(s)	409
BsuRI	GGCC	5 cut(s)	275, 292, 359, 600, 780
BtsCI	GGATG	1 cut(s)	52
BtsI	GCAGTG	1 cut(s)	816
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	1 cut(s)	567
CciI	TCATGA	1 cut(s)	120
Cfr10I	RCCGGY	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	357, 358
Csp6I	GTAC	2 cut(s)	761, 848
CspCI	CAANNNNNGTGG	2 cut(s)	300, 335
CviAII	CATG	7 cut(s)	16, 121, 174, 392, 508, 632, 831
CviQI	GTAC	2 cut(s)	761, 848
DdeI	CTNAG	1 cut(s)	521
DpnI	GATC	5 cut(s)	125, 216, 411, 514, 990
DpnII	GATC	5 cut(s)	123, 214, 409, 512, 988
EaeI	YGGCCR	2 cut(s)	598, 778
Eam1104I	CTCTTC	2 cut(s)	60, 553
EarI	CTCTTC	2 cut(s)	60, 553
Eco130I	CCWWGG	2 cut(s)	152, 336
Eco24I	GRGCYC	1 cut(s)	361
EcoO109I	RGGNCCY	2 cut(s)	357, 358
EcoRII	CCWGG	2 cut(s)	37, 348
EcoT14I	CCWWGG	2 cut(s)	152, 336
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	2 cut(s)	152, 336
Esp3I	CGTCTC	1 cut(s)	558
FaeI	CATG	7 cut(s)	19, 124, 177, 395, 511, 635, 834
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	7 cut(s)	15, 120, 173, 391, 507, 631, 830
FbaI	TGATCA	1 cut(s)	988
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	7 cut(s)	495, 526, 563, 795, 889, 892, 957
FokI	GGATG	1 cut(s)	39
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	7 cut(s)	495, 526, 563, 795, 889, 892, 957
FspBI	CTAG	1 cut(s)	317
GluI	GCNGC	7 cut(s)	495, 526, 563, 795, 889, 892, 957
GsaI	CCCAGC	1 cut(s)	507
HaeIII	GGCC	5 cut(s)	275, 292, 359, 600, 780
HapII	CCGG	4 cut(s)	279, 400, 543, 771
Hin1II	CATG	7 cut(s)	19, 124, 177, 395, 511, 635, 834
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HindIII	AAGCTT	1 cut(s)	940
HinfI	GANTC	6 cut(s)	100, 110, 578, 683, 865, 1018
HpaII	CCGG	4 cut(s)	279, 400, 543, 771
HphI	GGTGA	5 cut(s)	109, 397, 620, 718, 924
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	9 cut(s)	87, 109, 182, 219, 379, 573, 947, 973, 988
Hpy188III	TCNNGA	3 cut(s)	121, 164, 919
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	4 cut(s)	232, 520, 913, 916
HpyAV	CCTTC	4 cut(s)	88, 265, 720, 838
HpyCH4III	ACNGT	2 cut(s)	206, 909
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	3 cut(s)	173, 391, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	12, 597
HpyF3I	CTNAG	1 cut(s)	521
HpySE526I	ACGT	1 cut(s)	759
Hsp92II	CATG	7 cut(s)	19, 124, 177, 395, 511, 635, 834
Ksp22I	TGATCA	1 cut(s)	988
Kzo9I	GATC	5 cut(s)	123, 214, 409, 512, 988
LguI	GCTCTTC	2 cut(s)	60, 553
Lsp1109I	GCAGC	6 cut(s)	481, 512, 549, 878, 900, 943
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	1 cut(s)	317
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	3 cut(s)	97, 833, 1019
MalI	GATC	5 cut(s)	125, 216, 411, 514, 990
MboI	GATC	5 cut(s)	123, 214, 409, 512, 988
MboII	GAAGA	7 cut(s)	77, 103, 195, 419, 426, 458, 540
MflI	RGATCY	1 cut(s)	409
MhlI	GDGCHC	2 cut(s)	361, 669
MlsI	TGGCCA	2 cut(s)	600, 780
MluCI	AATT	3 cut(s)	489, 720, 823
MluNI	TGGCCA	2 cut(s)	600, 780
MlyI	GAGTC	5 cut(s)	94, 104, 572, 874, 1027
MmeI	TCCRAC	4 cut(s)	132, 160, 402, 738
MnlI	CCTC	7 cut(s)	16, 146, 321, 424, 775, 778, 941
Mox20I	TGGCCA	2 cut(s)	600, 780
Mph1103I	ATGCAT	1 cut(s)	393
MroXI	GAANNNNTTC	1 cut(s)	967
MscI	TGGCCA	2 cut(s)	600, 780
MslI	CAYNNNNRTG	4 cut(s)	14, 119, 630, 636
Msp20I	TGGCCA	2 cut(s)	600, 780
MspA1I	CMGCKG	2 cut(s)	562, 891
MspI	CCGG	4 cut(s)	279, 400, 543, 771
MspR9I	CCNGG	2 cut(s)	39, 350
Mva1269I	GAATGC	1 cut(s)	796
MvaI	CCWGG	2 cut(s)	39, 350
MwoI	GCNNNNNNNGC	2 cut(s)	12, 597
NdeII	GATC	5 cut(s)	123, 214, 409, 512, 988
NlaIII	CATG	7 cut(s)	19, 124, 177, 395, 511, 635, 834
NlaIV	GGNNCC	3 cut(s)	50, 359, 360
NmuCI	GTSAC	3 cut(s)	97, 833, 1019
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	177
NspV	TTCGAA	1 cut(s)	238
PagI	TCATGA	1 cut(s)	120
PciSI	GCTCTTC	2 cut(s)	60, 553
PcsI	WCGNNNNNNNCGW	2 cut(s)	244, 794
PctI	GAATGC	1 cut(s)	796
PdmI	GAANNNNTTC	1 cut(s)	967
PfeI	GAWTC	1 cut(s)	683
PflMI	CCANNNNNTGG	1 cut(s)	1014
PkrI	GCNGC	7 cut(s)	496, 527, 564, 796, 890, 893, 958
PleI	GAGTC	5 cut(s)	94, 104, 572, 873, 1026
PpsI	GAGTC	5 cut(s)	94, 104, 572, 873, 1026
Psp6I	CCWGG	2 cut(s)	37, 348
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	2 cut(s)	37, 348
PspN4I	GGNNCC	3 cut(s)	50, 359, 360
PspOMI	GGGCCC	1 cut(s)	357
PspPI	GGNCC	2 cut(s)	357, 358
PsrI	GAACNNNNNNTAC	2 cut(s)	744, 776
PsuI	RGATCY	1 cut(s)	409
PvuII	CAGCTG	2 cut(s)	562, 891
RsaI	GTAC	2 cut(s)	762, 849
RsaNI	GTAC	2 cut(s)	761, 848
RseI	CAYNNNNRTG	4 cut(s)	14, 119, 630, 636
SalI	GTCGAC	1 cut(s)	131
SapI	GCTCTTC	2 cut(s)	60, 553
SatI	GCNGC	7 cut(s)	495, 526, 563, 795, 889, 892, 957
Sau3AI	GATC	5 cut(s)	123, 214, 409, 512, 988
Sau96I	GGNCC	2 cut(s)	357, 358
SchI	GAGTC	5 cut(s)	94, 104, 572, 874, 1027
ScrFI	CCNGG	2 cut(s)	39, 350
SduI	GDGCHC	2 cut(s)	361, 669
SfaNI	GCATC	1 cut(s)	378
SfcI	CTRYAG	1 cut(s)	202
SfuI	TTCGAA	1 cut(s)	238
SmiMI	CAYNNNNRTG	4 cut(s)	14, 119, 630, 636
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	3 cut(s)	489, 720, 823
SsiI	CCGC	2 cut(s)	255, 794
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	37, 348
StyI	CCWWGG	2 cut(s)	152, 336
TaaI	ACNGT	2 cut(s)	206, 909
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	6 cut(s)	126, 132, 238, 247, 594, 788
TaqII	GACCGA	1 cut(s)	904
TasI	AATT	3 cut(s)	489, 720, 823
TauI	GCSGC	1 cut(s)	797
TfiI	GAWTC	1 cut(s)	683
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	3 cut(s)	97, 833, 1019
TseI	GCWGC	6 cut(s)	494, 525, 562, 888, 891, 956
Tsp45I	GTSAC	3 cut(s)	97, 833, 1019
TspDTI	ATGAA	3 cut(s)	78, 104, 819
TspRI	CASTG	1 cut(s)	823
Van91I	CCANNNNNTGG	1 cut(s)	1014
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	967
XspI	CTAG	1 cut(s)	317
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.